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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018222 ID=TCONS_00018222|Name=TCONS_00018222|organism=Clytia hemisphaerica|type=transcript|length=589bp
CATCATGGCAAATACAAAAGGATCTATGAGCATCAAGATTTTAATTAGCC
TGGCAATGATGAGTTCTTTACTACAAAAAACAAATGGCGAAATTTCATGC
AAAGATACACTGTttactgaaaatgaagatgactTTGAATCTCCAAACAT
TCCAAGAGACTCAAAAGAGACCGTTGATTGTGTATATGATATCAAACTGG
CAATGAAATCTCGTTGGATCAAATTGTCATGGCAACGCTTTGATATACTC
GGTACCATTCCTCGTTGTGATGAAGCAGAATATGTCGAAATATACACAGG
GAAGAAAAAGAGGAACTGGTTTCAAAGCTATTTACGAGTCATACTCAGAA
AGCTTTTCGCCCTTTATCAAAGCGTGCCAACCagatGCAGAAATCTTGAG
AGCGTCATCAGGAATCATAGCAAGTCCTGGTTGGCCAAACAAATACGAAA
AGAAGAGTTTCGTTAACGATAAATGTGAATGGTCCCTACAATCTTCAAAC
AGGGAGCAAATGATACAAATTAATTTCTTCGATATCGCGTTGACCAATAT
CGATTATTTGAAACGAGAAGATGAAGTAAAACTGCAAGG Run BLAST on NCBI transcript from alignment at sc0000291:166181..168740- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018222 ID=TCONS_00018222|Name=TCONS_00018222|organism=Clytia hemisphaerica|type=transcript|length=2560bp|location=Sequence derived from alignment at sc0000291:166181..168740- (Clytia hemisphaerica)
CATCATGGCAAATACAAAAGGATCTATGAGCATCAAGATTTTAATTAGCC
TGGCAATGATGAGTTCTTTACTACAAAAAACAAATGGCGAAATTTCATGC
AAAGATACACTGTTTACTGAAAATGAAGATGACTTTGAATCTCCAAACAT
TCCAAGAGACTCAAAAGAGACCGTTGATTGTGTATATGATATCAAACTGG
CAATGAAATCTCGTTGGATCAAATTGTCATGGCAACGCTTTGATATACTC
GGTACCATTCCTCGTTGTGATGAAGCAGAATATGTCGAAATATACACAGG
GTAAATCATACACGCTTTAGTTGTATATCGAGTGTGAAAATTCTCCCATG
GTGATTCGCAATCCAGCGGAAAATTCTCTCCATTTAAAGTATTCACCCCT
AAAGAATCCACATCTATAACACCCCTGTCTCTGTACCCCAGTGGGTATCA
AAAGCTCAGAGGGATGAAATTCAAAACTTTCAAATCCGCTGGGGTGGGTC
GAACCACTAAGTATTTTCAATGGGGTCATAAAATTCTATTGTTCTTTCAT
CATATTTTCAGTGGGGTGGCTCCTTTAAATTTTTAATTTTACCACTGGGG
GTGAGAGAGAAACTCCCATTTTCCACTGGGGTGACCATTTTCCCCAATGG
GGCGAAAGAATGGGCCTTTTTGAGCTATTTTTTCACTGGGGTGACCAGTG
GGGCGGATCTCAGTGGGTCACAGAGACGGGCTGTTCTATAGATACACATG
CTATTTCAAGAGTGTATCACCAGGGGGGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCAAACTTTCATTTTGAC
TTTTTCCGACAAAAACGCCCACCGCCTTCGGGCGCCCAACATTTTCCGCC
CAAATCTGTCCAAAAACGCCAAACCGCTCCACCCATCCGCCCATTCAAGA
AATATTTTGACTTTTTCAAGACTTTTTTTTGACTTTTATTTGACTTTTTG
ACTTTTTTCTAAGAATTTTTGAATTTTTCTTTGACTTTTTGACTTTATTT
TTGACTTTTTGACTTTTTCTTTGACTTTTTGACTTTTTTTTAACTTTTTT
GACTTTTTTTTTGACTTTTTGTAGAGGTGTACGATAATTTTTCGAGGGAT
TTACCCCTCGGGTTATAGCTACTCTTGACCCTTTTAGGAAAGCAGCCTCC
CCGAAGATTCCTCTCCTTCTCTCAAAGATCCTGCTCCCTTATACATTCTT
CATCAGCAGCTTTCTTTGGCTTATATGATGTTCTAAAAAATCTCTAACGT
CGAATTTATTTCCTCTCTCAGGTGCGACGGTCGTTACCTGGTGGCTCGAT
TTTGTTCTTCTAACATGGCTACCTTACCACATGAAATTTATTCTAAGGAG
AGATGTATGAGAATTAAATATCATTCTTCACCTTACCCAGGAAGAAAAAG
AGGAACTGGTTTCAAAGCTATTTACGAGTCATACTCAGAAAGCTTTTCGC
CCTTTATCAAAGCGTGCCAACCGTAAGTTACATTCTTGTTAGTCCAACCC
AACTGCTTGGAACAATGGACATTACTCACTATTTTCAACAATTCATGGTA
ATTTTCCTTTCTAAGCATTGTATACTAAGACAATGTAATCCGTTTTTCAT
CTCAATTCAAGAGTCTGAATATCTTTCAATCCCGTTTCTATTTTCAATTT
TGTTTGCTGTCAAGATATGTAAAACTTTAAACGAGAATCATTTTATTTTT
TAGAGATGCAGAAATCTTGAGAGCGTCATCAGGAATCATAGCAAGTCCTG
GTTGGCCAAACAAATACGAAAAGAAGAGTTTCGTTAACGATAAATGTGAA
TGGTCCCTACAATCTTCAAACAGGGAGCAAATGATACAAATTAATTTCTT
CGATATCGCGTTGACCAATATCGATTATTTGAAACGAGAAGATGAAGTAA
AACTGCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018222-exon-sc0000291-1575043694:168441..168740 | TCONS_00018222-exon-sc0000291-1575043694:168441..168740 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1575043694:166619..166700 | TCONS_00018222-exon-sc0000291-1575043694:166619..166700 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1575043694:166181..166387 | TCONS_00018222-exon-sc0000291-1575043694:166181..166387 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1510915933:168441..168740 | TCONS_00018222-exon-sc0000291-1510915933:168441..168740 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1510915933:166619..166700 | TCONS_00018222-exon-sc0000291-1510915933:166619..166700 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1510915933:166181..166387 | TCONS_00018222-exon-sc0000291-1510915933:166181..166387 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1491911889:168441..168740 | TCONS_00018222-exon-sc0000291-1491911889:168441..168740 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1491911889:166619..166700 | TCONS_00018222-exon-sc0000291-1491911889:166619..166700 | Clytia hemisphaerica | exon |
| TCONS_00018222-exon-sc0000291-1491911889:166181..166387 | TCONS_00018222-exon-sc0000291-1491911889:166181..166387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000291 | supercontig | sc0000291:166181..168740 - |
Blast
The following BLAST results are available for this feature:
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