TCONS_00018220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018220
Unique NameTCONS_00018220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018220 ID=TCONS_00018220|Name=TCONS_00018220|organism=Clytia hemisphaerica|type=transcript|length=1821bp
CATCATGGCAAATACAAAAGGATCTATGAGCATCAAGATTTTAATTAGCC
TGGCAATGATGAGTTCTTTACTACAAAAAACAAATGGCGAAATTTCATGC
AAAGATACACTGTttactgaaaatgaagatgactTTGAATCTCCAAACAT
TCCAAGAGACTCAAAAGAGACCGTTGATTGTGTATATGATATCAAACTGG
CAATGAAATCTCGTTGGATCAAATTGTCATGGCAACGCTTTGATATACTC
GGTACCATTCCTCGTTGTGATGAAGCAGAATATGTCGAAATATACACAGG
GTGCGACGGTCGTTACCTGGTGGCTCGATTTTGTTCTTCTAACATGGCTA
CCTTACCACATGAAATTTATTCTAAGGAGAGATGTATGAGAATTAAATAT
CATTCTTCACCTTACCCAGGAAGAAAAAGAGGAACTGGTTTCAAAGCTAT
TTACGAGTCATACTCAGAAAGCTTTTCGCCCTTTATCAAAGCGTGCCAAC
CagatGCAGAAATCTTGAGAGCGTCATCAGGAATCATAGCAAGTCCTGGT
TGGCCAAACAAATACGAAAAGAAGAGTTTCGTTAACGATAAATGTGAATG
GTCCCTACAATCTTCAAACAGGGAGCAAATGATACAAATTAATTTCTTCG
ATATCGCGTTGACCAATATCGATTATTTGAAACGAGAAGATGAAGTAAAA
CTGCAAGGGCTTACAGCACAAACACATACTGATGTTCTGATTCACACAAA
GAGTGAAACAACAAAGTCACTAATTGAATCCCCAGCNCACAAACACATAC
TGATGTTCCGATTCACACAAAGAGTGAAACAACAAAGTCACTAATTAAAT
CTCCAGTAACAAAACCACCTTTCACAGTAGCATCTCCAACAAGCTTTATG
GTAACAGCTACAATATCAAGTGAAAACAAGAACACTACTGATAATTCCAT
CTGGGATAAAATTCCATGGAAAATCATTGCATATGTGGTATTAGCCCTTA
TCGGAACAGTTGTTTTTGCGCTTCTTACAGGAGCAGGAGCCAAGAAAGTA
TGCAATTGTAATTTTTCTATCAATCTATCATCACCTAAAGAACAACGAAA
TAAAGGGTATCAATCTTTCGATCAATCTCATAACAAGCAAGGAGCTCGCT
CACAAGCTCCTTTGCAGACAAACGAAGAAGATAATTTGGAAATACAATCT
CAGTCACCGTTTGCACCAAATGATTATCAATCTAGCTCAGTACCCTCTGC
ACCAATTCTTGGTGATGGATATTCATCTCCACTACCAGATTATGCACCAC
CAAGCTATCAAGAACTCGTGAGAGACGACCAACGAAACGAGAAAGTTTCT
TTACTGTAATATTATTGCAatagaaaagttttaaattCGAAAGTCTATTG
TATGTTTATTTTACAGGAGAAATATTTAgacataggcggttttagactgt
aattgtaatttgcttgttttttaacgagcgttgcactccttcgcatgttt
ccgacgtacttgctctactGTCTTAAATCCACCAGTGTTAGAAGTGGGGT
GTCGTTTCCTAATGTTCTCCTTGCTAATCAGATTTGATAAAAAGTGAAAG
TCTAACATGTTCGTTAAGGACGGAAATAAGAATCCTGTACATATTGGTAA
CGGCTGCTTGTTTCTGACTCGGTATCTGATTCATCTTTACTTTGTCATTC
ATAtaaatcattgaaaatattcaggatgataatcaatttttgaagagaat
attttttatctattttagaattttcatCTTGTACATTATATTCCCAAATA
AACAacataaaacaaagaaac
Run BLAST on NCBI

transcript from alignment at sc0000291:163150..168740-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018220 ID=TCONS_00018220|Name=TCONS_00018220|organism=Clytia hemisphaerica|type=transcript|length=5591bp|location=Sequence derived from alignment at sc0000291:163150..168740- (Clytia hemisphaerica)
CATCATGGCAAATACAAAAGGATCTATGAGCATCAAGATTTTAATTAGCC
TGGCAATGATGAGTTCTTTACTACAAAAAACAAATGGCGAAATTTCATGC
AAAGATACACTGTTTACTGAAAATGAAGATGACTTTGAATCTCCAAACAT
TCCAAGAGACTCAAAAGAGACCGTTGATTGTGTATATGATATCAAACTGG
CAATGAAATCTCGTTGGATCAAATTGTCATGGCAACGCTTTGATATACTC
GGTACCATTCCTCGTTGTGATGAAGCAGAATATGTCGAAATATACACAGG
GTAAATCATACACGCTTTAGTTGTATATCGAGTGTGAAAATTCTCCCATG
GTGATTCGCAATCCAGCGGAAAATTCTCTCCATTTAAAGTATTCACCCCT
AAAGAATCCACATCTATAACACCCCTGTCTCTGTACCCCAGTGGGTATCA
AAAGCTCAGAGGGATGAAATTCAAAACTTTCAAATCCGCTGGGGTGGGTC
GAACCACTAAGTATTTTCAATGGGGTCATAAAATTCTATTGTTCTTTCAT
CATATTTTCAGTGGGGTGGCTCCTTTAAATTTTTAATTTTACCACTGGGG
GTGAGAGAGAAACTCCCATTTTCCACTGGGGTGACCATTTTCCCCAATGG
GGCGAAAGAATGGGCCTTTTTGAGCTATTTTTTCACTGGGGTGACCAGTG
GGGCGGATCTCAGTGGGTCACAGAGACGGGCTGTTCTATAGATACACATG
CTATTTCAAGAGTGTATCACCAGGGGGGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCAAACTTTCATTTTGAC
TTTTTCCGACAAAAACGCCCACCGCCTTCGGGCGCCCAACATTTTCCGCC
CAAATCTGTCCAAAAACGCCAAACCGCTCCACCCATCCGCCCATTCAAGA
AATATTTTGACTTTTTCAAGACTTTTTTTTGACTTTTATTTGACTTTTTG
ACTTTTTTCTAAGAATTTTTGAATTTTTCTTTGACTTTTTGACTTTATTT
TTGACTTTTTGACTTTTTCTTTGACTTTTTGACTTTTTTTTAACTTTTTT
GACTTTTTTTTTGACTTTTTGTAGAGGTGTACGATAATTTTTCGAGGGAT
TTACCCCTCGGGTTATAGCTACTCTTGACCCTTTTAGGAAAGCAGCCTCC
CCGAAGATTCCTCTCCTTCTCTCAAAGATCCTGCTCCCTTATACATTCTT
CATCAGCAGCTTTCTTTGGCTTATATGATGTTCTAAAAAATCTCTAACGT
CGAATTTATTTCCTCTCTCAGGTGCGACGGTCGTTACCTGGTGGCTCGAT
TTTGTTCTTCTAACATGGCTACCTTACCACATGAAATTTATTCTAAGGAG
AGATGTATGAGAATTAAATATCATTCTTCACCTTACCCAGGAAGAAAAAG
AGGAACTGGTTTCAAAGCTATTTACGAGTCATACTCAGAAAGCTTTTCGC
CCTTTATCAAAGCGTGCCAACCGTAAGTTACATTCTTGTTAGTCCAACCC
AACTGCTTGGAACAATGGACATTACTCACTATTTTCAACAATTCATGGTA
ATTTTCCTTTCTAAGCATTGTATACTAAGACAATGTAATCCGTTTTTCAT
CTCAATTCAAGAGTCTGAATATCTTTCAATCCCGTTTCTATTTTCAATTT
TGTTTGCTGTCAAGATATGTAAAACTTTAAACGAGAATCATTTTATTTTT
TAGAGATGCAGAAATCTTGAGAGCGTCATCAGGAATCATAGCAAGTCCTG
GTTGGCCAAACAAATACGAAAAGAAGAGTTTCGTTAACGATAAATGTGAA
TGGTCCCTACAATCTTCAAACAGGGAGCAAATGATACAAATTAATTTCTT
CGATATCGCGTTGACCAATATCGATTATTTGAAACGAGAAGATGAAGTAA
AACTGCAAGGTGAATTTTCTTTGTTAATTCAACAGCGAGTAGTGGAAGCG
AATACTTGCCTTGCTCAAAAGAGTTTTTGATTAATAAAGATTTAACCTGT
GGAGACGGATTATAAGAATTTTATCGTGCATGTGTCAATCATATTACTAT
TCAAAGAACAAAACATGAAGATCATTACAACGATAGCTTTGATACTTCTT
GTGTTGTGATGCCTGACTCATTTGAAGAATGGAACGGGCGTAAATAATGG
GCTTGAAAAGTAAAGATTGCCTGGAAAAGGAACCACTATCCATTGGTCCA
TGTACACATATATTTCCGGTTAAATAGCCTTTCATTTTTGGTCTGTTTGA
AAAATTTGTTTTGTTTTATTGTTTCGTCATCTAGGGGAGCTTTCATCACT
GTCAAACAGATTAACACCCTTTAAAAGAATATACAAAGGAAGTTACCTAC
CCTTTACTGAAAATACTGAAAGTTACTTAGTTAATGCGACCATGACGATT
GATTCCAGTGATGCAACCTCATGGTCAAACTATGTCAGAAACAATGGAGG
TTTCGCGTTTGGTTATGTCTTTTATGACCCGAGAAAAGGTATTTTACACT
ACTTTTACGCTATTGGTAGTGAAACAGGGTTACTAAGAAGAACATATCCC
AGGAGACACTTAGGCAAATTGGGTATGGGGCAAACGTTTGGCTGGTCAGG
GTCCCTTTTTACACCCCTGTCTCATAGCCCAAGCGGAACTGTTTCCCACA
GTGGGGACAAACATTTTTATTTCCCAGTGAAACTGACAGTAGTGTAATTT
TGTTACTGACAAATAAAATTATGATATTGATACAGCTGTTCGACTTTTTG
TTGACATCGAGCACTCTTTACAACGGAAATAACTTGCTTTGTTTCTATTT
CCCAATGATACAAGTTCTATTGTTCCAAGCTTAAAAAACCCAGTGGGGAT
GGTTTAAGCTTTCATGGTTTAAGAGTGCAATTTTTTACATTGAATTTCAA
ACGAGAATGAGACCAAACTTAGTTTACGTTTTGAAGATAACTGAAAGGGT
CCACGTTTCAAACTCCAGCAGCATGTTGGCCGTCAAGGTCACTGCCCCCG
GGAACATATCTCAATCTAAGTGTTAACCTTTAAAATACGGCAAAACATTT
TTAGTGAGAGTATTCTCGACTCTCAGAGAGTTTGTGTTATGGATAATTAA
ATGCATTTTGTACTTCTACAACCATTATTTTCATAGGGCTTACAGCACAA
ACACATACTGATGTTCTGATTCACACAAAGAGTGAAACAACAAAGTCACT
AATTGAATCCCCAGCNCACAAACACATACTGATGTTCCGATTCACACAAA
GAGTGAAACAACAAAGTCACTAATTAAATCTCCAGTAACAAAACCACCTT
TCACAGTAGCATCTCCAACAAGCTTTATGGTAACAGCTACAATATCAAGT
GAAAACAAGAACACTACTGATAATTCCATCTGGGATAAAATTCCATGGAA
AATCATTGCATATGTGGTATTAGCCCTTATCGGAACAGTTGTTTTTGCGC
TTCTTACAGGAGCAGGAGCCAAGAAAGTATGCAATTGTAATTTTTCTATC
AATCTATCATCACCTAAAGAACAACGAAATAAAGGGTATCAATCTTTCGA
TCAATCTCATAACAAGCAAGGAGCTCGCTCACAAGCTCCTTTGCAGACAA
ACGAAGAAGATAATTTGGAAATACAATCTCAGTCACCGTTTGCACCAAAT
GGTAAGAAGTCATTTTTCTGATTCGTTTGATATTTTTCTTGATTATAACC
ATAGCAAAAAATTAGGCATTCTTAGCGAAAAGTAACGTTATTCTCATCGA
TTTTAAAGCTCCGAATGGGCTAGAGTTGGATGGAAAAGAAAACCACTTGT
TTCCCATCAAAAAATCGTAATCTGCATTTTACACAAATGGATTGAAAGTA
AAATCTATTAACAGATTTCGGAAATCATGCTGCATGAAAACAAAGAAAGC
ACTAGATTCAATCTGTTATTCTTAAAGCGGCGTAAGTCTTAAGGCTTTTT
TATTTTTTTTGCTTGAAAAAGGTTGAAGGTCCTCTCTAGCCTTTCGGGGC
TTTAAAATCAATGGAATACCAAATAAACAATTATTCAGTAGAAAATGTAC
AATAAGATGTGGAAGTATACCTGTACATTCGGTGTATGACTTAAGATATC
ATATCAAAAGAAAGGCTAAAGCTTTTTTTTTCCAAATTAATTAATTCAAA
ATTAATTAAAGTAACAGAGACCTAACGATAATTATCTTAAAAATTAGCAT
TTGTTTTCGTGACGTTTTCGCTTACGAAGTGTGTTTCCATGACAGCTTAT
GACCGAAATACTGCTCCATATTTTTTATCTCTCTGATTCATTCGTTCTCT
GATGCAAATATTGTAAAATATAGCCATCTTATCTTATTTTAGATTATCAA
TCTAGCTCAGTACCCTCTGCACCAATTCTTGGTGATGGATATTCATCTCC
ACTACCAGATTATGCACCACCAAGCTATCAAGAACTCGTGAGAGACGACC
AACGAAACGAGAAAGTTTCTTTACTGTAATATTATTGCAATAGAAAAGTT
TTAAATTCGAAAGTCTATTGTATGTTTATTTTACAGGAGAAATATTTAGA
CATAGGCGGTTTTAGACTGTAATTGTAATTTGCTTGTTTTTTAACGAGCG
TTGCACTCCTTCGCATGTTTCCGACGTACTTGCTCTACTGTCTTAAATCC
ACCAGTGTTAGAAGTGGGGTGTCGTTTCCTAATGTTCTCCTTGCTAATCA
GATTTGATAAAAAGTGAAAGTCTAACATGTTCGTTAAGGACGGAAATAAG
AATCCTGTACATATTGGTAACGGCTGCTTGTTTCTGACTCGGTATCTGAT
TCATCTTTACTTTGTCATTCATATAAATCATTGAAAATATTCAGGATGAT
AATCAATTTTTGAAGAGAATATTTTTTATCTATTTTAGAATTTTCATCTT
GTACATTATATTCCCAAATAAACAACATAAAACAAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010241XLOC_010241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018220-exon-sc0000291-1575043694:168441..168740TCONS_00018220-exon-sc0000291-1575043694:168441..168740Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1575043694:166619..166819TCONS_00018220-exon-sc0000291-1575043694:166619..166819Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1575043694:166182..166387TCONS_00018220-exon-sc0000291-1575043694:166182..166387Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1575043694:164440..164954TCONS_00018220-exon-sc0000291-1575043694:164440..164954Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1575043694:163150..163748TCONS_00018220-exon-sc0000291-1575043694:163150..163748Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1510915933:168441..168740TCONS_00018220-exon-sc0000291-1510915933:168441..168740Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1510915933:166619..166819TCONS_00018220-exon-sc0000291-1510915933:166619..166819Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1510915933:166182..166387TCONS_00018220-exon-sc0000291-1510915933:166182..166387Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1510915933:164440..164954TCONS_00018220-exon-sc0000291-1510915933:164440..164954Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1510915933:163150..163748TCONS_00018220-exon-sc0000291-1510915933:163150..163748Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1491911889:168441..168740TCONS_00018220-exon-sc0000291-1491911889:168441..168740Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1491911889:166619..166819TCONS_00018220-exon-sc0000291-1491911889:166619..166819Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1491911889:166182..166387TCONS_00018220-exon-sc0000291-1491911889:166182..166387Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1491911889:164440..164954TCONS_00018220-exon-sc0000291-1491911889:164440..164954Clytia hemisphaericaexon
TCONS_00018220-exon-sc0000291-1491911889:163150..163748TCONS_00018220-exon-sc0000291-1491911889:163150..163748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:163150..168740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0354777	0.160937	0.0812978	0.0279589	0	0.159742	0	0	0	0.447066	0	1.85534	0.00118829	2.91964	0.751086	6.38428e-06	1.55404	0	1.14093	0.206828	0.0480841	0.927069	0.228389	0.0923548	0.146764	0.145054	0.254087	0.13808	0.578521	0.591753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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