TCONS_00018211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018211
Unique NameTCONS_00018211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018211 ID=TCONS_00018211|Name=TCONS_00018211|organism=Clytia hemisphaerica|type=transcript|length=737bp
GTTTTAAAGAGTATAAAAGGGATGAATTTTGTAGTTAAAAGCATCGAAAA
CAAATCAGTTTCTCGTCGATCAGGAAGATTCAAGAATCAAAATGAAGATT
GCATTCGTTCTTCTTTTCGCTTTCATCGCTGCTTGTAGTGCATCACACAG
TCCACCAAGGCACCCAAGATGCCGTGGATTTCTTTGTCAATACCGACGAC
GTGCACCTGTTTGTTCTGCTTTCAAGGGATGTAACGCACACAATGTTGGA
GCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGTTCAATGCTC
TAACTCAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAATCTACAACG
AAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTGAGATACCCT
CCTTATTGCCCACCAACTTTCTGTCATGGACTTACAGATCGTCTCTACCC
ATTCAATGATTATTACTACCCAAGATACTTTGTTCAATGCTCCAATGGAA
CACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACTCAGAA
CAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAATTCATCTCACA
AATAACGCTGACTCAGCAAAATGAGATACGACTATCCAAGAACGAACCCT
GTACCAAAtcatttctttattattttctgttttgtaagattttatacatg
attcatttaaaaatataaGCCGGCATATATATCTAAT
Run BLAST on NCBI

protein sequence of TCONS_00018211-protein

>TCONS_00018211-protein ID=TCONS_00018211-protein|Name=TCONS_00018211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MKIAFVLLFAFIAACSASHSPPRHPRCRGFLCQYRRRAPVCSAFKGCNAH
NVGALFRYSDYYPNYWVQCSNSGPVCRSCPDYQIYNEKNSACVRAARSYL
RYPPYCPPTFCHGLTDRLYPFNDYYYPRYFVQCSNGTPYLKACPATTVFS
YSEQVCIHRFSYHPW
Run BLAST on NCBI

transcript from alignment at sc0000291:75537..76878-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018211 ID=TCONS_00018211|Name=TCONS_00018211|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0000291:75537..76878- (Clytia hemisphaerica)
GTTTTAAAGAGTATAAAAGGGATGAATTTTGTAGTTAAAAGCATCGAAAA
CAAATCAGTTTCTCGTCGATCAGGAAGATTCAAGAATCAAAATGAAGATT
GCATTCGTTCTTCTTTTCGCTTTCATCGCTGGTAAGTTTGATCCTCCTTC
AAGAAAAAAATTCTTTTTCCTCAAATTTAGCCTTCTTTAACTTCAACCTT
CAACCACGATCACAAAACCGAGAAAGACTCGATCACAATATAAAGGATCC
TTATTTTCTCCAAAATTCTAAGCATAAATTTTTGAACCCAAAATGATAAG
CTCCCAACGTTTAAGAGATTTATTCTATATCCTACACTATTTTTAAGTCT
GTTATACTGTAACAGCCCCCTTTGTTATCCCTTTTCAGCTTGTAGTGCAT
CACACAGTCCACCAAGGCACCCAAGATGCCGTGGATTTCTTTGTCAATAC
CGACGACGTGCACCTGTTTGTAAGTAAAAAAGTTTCAATAGTTTCAGCGT
TTCATTTTTAGCATGTCCAAAACTGATGAATGAAAAACTGAATGAGTTTC
CTTCAAAGAAATTATCTTTTTTTGTCATTATTAAAAGGCTGCTGAAATTC
TCACTAATTTTCAATAAAACTAAAATTGAATATTTTCTCGCCAGGTTCTG
CTTTCAAGGGATGTAACGCACACAATGTTGGAGCACTCTTCAGATATTCA
GACTATTACCCAAACTACTGGGTTCAATGCTCTAACTCAGGACCAGTTTG
CCGCTCATGTCCAGATTATCAAATCTACAACGAAAAAAACAGCGCTTGTG
TGAGAGCTGCACGAAGCTACTTGAGATACCCTCCTTATTGTAAGTGCTTT
TATTTAGTTTCTTCTTAATAAATTAAAAAATAAAACAGAGATTCTTTTTT
ACGCCAAAAAGGATGTCACTCTTTCACTCTAAATGAACACATGAAAAGCA
AAAAAATTACCTTTCTTTTCACGAATTTTGTATAAAAATGTTTTTATTTT
TATGATTTACAGGCCCACCAACTTTCTGTCATGGACTTACAGATCGTCTC
TACCCATTCAATGATTATTACTACCCAAGATACTTTGTTCAATGCTCCAA
TGGAACACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACT
CAGAACAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAATTCATC
TCACAAATAACGCTGACTCAGCAAAATGAGATACGACTATCCAAGAACGA
ACCCTGTACCAAATCATTTCTTTATTATTTTCTGTTTTGTAAGATTTTAT
ACATGATTCATTTAAAAATATAAGCCGGCATATATATCTAAT

Coding sequence (CDS) from alignment at sc0000291:75537..76878-

>TCONS_00018211 ID=TCONS_00018211|Name=TCONS_00018211|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000291:75537..76878- (Clytia hemisphaerica)
GCCCACCAACTTTCTGTCATGGACTTACAGATCGTCTCTACCCATTCAAT
GATTATTACTACCCAAGATACTTTGTTCAATGCTCCAATGGAACACCATA
CTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTT
GCATCCACCGATTCTCCTACCATCCTTGGTAAGTTCTGCTTTCAAGGGAT
GTAACGCACACAATGTTGGAGCACTCTTCAGATATTCAGACTATTACCCA
AACTACTGGGTTCAATGCTCTAACTCAGGACCAGTTTGCCGCTCATGTCC
AGATTATCAAATCTACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCAC
GAAGCTACTTGAGATACCCTCCTTATTCTTGTAGTGCATCACACAGTCCA
CCAAGGCACCCAAGATGCCGTGGATTTCTTTGTCAATACCGACGACGTGC
ACCTGTTTATGAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGGC
CCACCAACTTTCTGTCATGGACTTACAGATCGTCTCTACCCATTCAATGA
TTATTACTACCCAAGATACTTTGTTCAATGCTCCAATGGAACACCATACT
TGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTTGC
ATCCACCGATTCTCCTACCATCCTTGGTAAGTTCTGCTTTCAAGGGATGT
AACGCACACAATGTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAA
CTACTGGGTTCAATGCTCTAACTCAGGACCAGTTTGCCGCTCATGTCCAG
ATTATCAAATCTACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGA
AGCTACTTGAGATACCCTCCTTATTCTTGTAGTGCATCACACAGTCCACC
AAGGCACCCAAGATGCCGTGGATTTCTTTGTCAATACCGACGACGTGCAC
CTGTTTATGAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGGCCC
ACCAACTTTCTGTCATGGACTTACAGATCGTCTCTACCCATTCAATGATT
ATTACTACCCAAGATACTTTGTTCAATGCTCCAATGGAACACCATACTTG
AAAGCATGCCCCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTTGCAT
CCACCGATTCTCCTACCATCCTTGGTAAGTTCTGCTTTCAAGGGATGTAA
CGCACACAATGTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACT
ACTGGGTTCAATGCTCTAACTCAGGACCAGTTTGCCGCTCATGTCCAGAT
TATCAAATCTACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAG
CTACTTGAGATACCCTCCTTATTCTTGTAGTGCATCACACAGTCCACCAA
GGCACCCAAGATGCCGTGGATTTCTTTGTCAATACCGACGACGTGCACCT
GTTTATGAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGGCCCAC
CAACTTTCTGTCATGGACTTACAGATCGTCTCTACCCATTCAATGATTAT
TACTACCCAAGATACTTTGTTCAATGCTCCAATGGAACACCATACTTGAA
AGCATGCCCCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTTGCATCC
ACCGATTCTCCTACCATCCTTGGTAAGTTCTGCTTTCAAGGGATGTAACG
CACACAATGTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACTAC
TGGGTTCAATGCTCTAACTCAGGACCAGTTTGCCGCTCATGTCCAGATTA
TCAAATCTACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCT
ACTTGAGATACCCTCCTTATTCTTGTAGTGCATCACACAGTCCACCAAGG
CACCCAAGATGCCGTGGATTTCTTTGTCAATACCGACGACGTGCACCTGT
TTATGAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010236XLOC_010236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018211-exon-sc0000291-1575043694:76748..76878TCONS_00018211-exon-sc0000291-1575043694:76748..76878Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1575043694:76410..76490TCONS_00018211-exon-sc0000291-1575043694:76410..76490Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1575043694:76040..76234TCONS_00018211-exon-sc0000291-1575043694:76040..76234Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1575043694:75537..75866TCONS_00018211-exon-sc0000291-1575043694:75537..75866Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1510915933:76748..76878TCONS_00018211-exon-sc0000291-1510915933:76748..76878Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1510915933:76410..76490TCONS_00018211-exon-sc0000291-1510915933:76410..76490Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1510915933:76040..76234TCONS_00018211-exon-sc0000291-1510915933:76040..76234Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1510915933:75537..75866TCONS_00018211-exon-sc0000291-1510915933:75537..75866Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1491911889:76748..76878TCONS_00018211-exon-sc0000291-1491911889:76748..76878Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1491911889:76410..76490TCONS_00018211-exon-sc0000291-1491911889:76410..76490Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1491911889:76040..76234TCONS_00018211-exon-sc0000291-1491911889:76040..76234Clytia hemisphaericaexon
TCONS_00018211-exon-sc0000291-1491911889:75537..75866TCONS_00018211-exon-sc0000291-1491911889:75537..75866Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018211-proteinTCONS_00018211-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:75537..76878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325894	0.3336	0.330478	0.262987	0	0	0	0.242623	0.431625	5.76713	7.06972	0.189763	109.14	199.207	11.5222	7.10972	49.7596	270.448	0.852553	5.87881	0	0	0	0.308161	0.101135	0.0643849	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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