TCONS_00018188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018188
Unique NameTCONS_00018188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018188 ID=TCONS_00018188|Name=TCONS_00018188|organism=Clytia hemisphaerica|type=transcript|length=217bp
GTACCTTGAAAGTAACGAAAAGCTCTCCATAAGATATCGGCACGCGGACA
GTTTGACCATCCTCAATACCAGCAGGGACAGGGATGCTGACAGTTTTATT
CTCCATCACACTTCCTTTACCACGGCATTTTCGACAAGGTGTTTGAATGA
TAGTCCCTTGACCCTGGCATCGGCGACATGTGGATCTCATATTGAAAAAA
CCTGTTGAAACTGTCTC
Run BLAST on NCBI

transcript from alignment at sc0000291:30743..31119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018188 ID=TCONS_00018188|Name=TCONS_00018188|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at sc0000291:30743..31119+ (Clytia hemisphaerica)
GTACCTTGAAAGTAACGAAAAGCTCTCCATAAGATATCGGCACGCGGACA
GTTTGACCATCCTCAATACCTGGCGAGTGACAAGATAAAACATTATTAGT
TTAGTCAAAAGGTGAACTTGTTCGAAGGAAATCAAATCAGAACCTGCAAA
TAACTCTAAAATTTTGTTGCCATACGTATCtatgttttttaaaattttag
caAAAGAATGCCAAATTTAATAAACATACCAGCAGGGACAGGGATGCTGA
CAGTTTTATTCTCCATCACACTTCCTTTACCACGGCATTTTCGACAAGGT
GTTTGAATGATAGTCCCTTGACCCTGGCATCGGCGACATGTGGATCTCAT
ATTGAAAAAACCTGTTGAAACTGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010218XLOC_010218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018188-exon-sc0000291-1491911889:30743..30807TCONS_00018188-exon-sc0000291-1491911889:30743..30807Clytia hemisphaericaexon
TCONS_00018188-exon-sc0000291-1510915933:30743..30807TCONS_00018188-exon-sc0000291-1510915933:30743..30807Clytia hemisphaericaexon
TCONS_00018188-exon-sc0000291-1575043694:30743..30807TCONS_00018188-exon-sc0000291-1575043694:30743..30807Clytia hemisphaericaexon
TCONS_00018188-exon-sc0000291-1491911889:30968..31119TCONS_00018188-exon-sc0000291-1491911889:30968..31119Clytia hemisphaericaexon
TCONS_00018188-exon-sc0000291-1510915933:30968..31119TCONS_00018188-exon-sc0000291-1510915933:30968..31119Clytia hemisphaericaexon
TCONS_00018188-exon-sc0000291-1575043694:30968..31119TCONS_00018188-exon-sc0000291-1575043694:30968..31119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:30743..31119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5573	18.8309	12.7523	4.0695	13.9813	9.66717	6.66459	11.4111	25.9251	25.5507	68.7525	28.4112	75.3798	103.996	59.8291	58.1611	45.3866	42.0778	30.4798	31.6007	27.4704	31.1228	21.1065	22.859	46.4486	33.2714	12.5729	31.7046	15.3002	10.5451
Blast
[Close]
BLAST of TCONS_00018188 vs. Swiss-Prot (Human)
Match: DNJA3 (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.126e-24
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = -1 
Query:    2 ETVSTGFFNMRSTCRRCQGQGTIIQTPCRKCRGKGSVMENKTVSIPVPAGIEDGQTVRVPISYGELFVTFKV 217
            ET++TG F MRSTCRRC G+G+II +PC  CRG G   + K V IPVPAG+EDGQTVR+P+   E+F+TF+V
Sbjct:  262 ETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDGQTVRMPVGKREIFITFRV 333
The following BLAST results are available for this feature:
BLAST of TCONS_00018188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJA32.126e-2461.11DnaJ homolog subfamily A member 3, mitochondrial O... [more]
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