TCONS_00018181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018181
Unique NameTCONS_00018181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018181 ID=TCONS_00018181|Name=TCONS_00018181|organism=Clytia hemisphaerica|type=transcript|length=1076bp
CTAACACAGTCATTGCGGTGCAAGTCAGTAATCAATAGTTTTTATTCACA
AATGATTCCTGTTATGTCTCTTTATTTTCGTCGTACCAGCATTTGAAAGT
TCAAAGTGCATAACCTTCCTACACCACTAACATTAATCCCCATACATTTT
TGAGAATCTGAATGTAAATAAGGACCAAATGGTTGTATTCTACCACAACC
ATCCCACCAAAATGCAGATAATTTGAAGCTTGCACAATTGTGGTGGTGAT
TATCTCTTTTCACGTCTTTTGTTGTGAATTGCATCCCGTTCAAATCATTG
ATTTGGGGCTGTGACCCTGGTTTGATGTCACCTACTGTCAGGCGATAGTA
ATCTGCTTCATTTGCAACATGAAAATTTCCGTGCCAGCCAAAATATGTGT
TATCTGCGTTTGCAGGTGAATTAGCAACctctatttgtgttctgaaatAC
AGTTCATATTGACCAGAATCTGTGATTTGATGAACAAGTTCATTTCCAAG
ATAAAAATCACCAGTAATTTCACCGATACCGTTTTTATATTGATTCCATC
CAACATTCCAATTATGTTGACTAGTCGTTCGGTAAAGTATCACAGTCCAA
CCACCACCTTCAATTTCCATATCACATCTGATATCTCTTTGACCTTTACC
AAGAAGATTTATGGAGTAAACACCAGAGCTCTTGTGGCCAGAGTTATATA
AATCCTGACAATCCTGAATCTGAGCTGTGTATAATATTGTGTTATCTTCT
GTTGCTTGGCTGCCAGTCAAACCAGTGGTTGTGCTGTTATAAAAATGACA
ACGAATTGGCATTGCGTTGCTTGTTCTCTGGACGAGAAAAGAGAAGCAAG
TTATCACATGATGACATTTTGAGAAACAATGTTGCTCAAATTTGACATCA
ACTGTCGAGTAAGGTGTTTTGTTTGGTATTTTGTTTCGTCCAACAATTTC
GAATCTCTTTGAAGCAATGATTATGATTTGGGtttcaaaccaaaacaaaa
ttaaagaaattgttgTTAAATTTTTCACGTTCATTGTTCGACTATTTCAG
TGCAAAAGTTCCTGTCAGACTGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00018181-protein

>TCONS_00018181-protein ID=TCONS_00018181-protein|Name=TCONS_00018181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MNVKNLTTISLILFWFETQIIIIASKRFEIVGRNKIPNKTPYSTVDVKFE
QHCFSKCHHVITCFSFLVQRTSNAMPIRCHFYNSTTTGLTGSQATEDNTI
LYTAQIQDCQDLYNSGHKSSGVYSINLLGKGQRDIRCDMEIEGGGWTVIL
YRTTSQHNWNVGWNQYKNGIGEITGDFYLGNELVHQITDSGQYELYFRTQ
IEVANSPANADNTYFGWHGNFHVANEADYYRLTVGDIKPGSQPQINDLNG
MQFTTKDVKRDNHHHNCASFKLSAFWWDGCGRIQPFGPYLHSDSQKCMGI
NVSGVGRLCTLNFQMLVRRK
Run BLAST on NCBI

transcript from alignment at sc0000290:211295..212370

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018181 ID=TCONS_00018181|Name=TCONS_00018181|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at sc0000290:211295..212370 (Clytia hemisphaerica)
CTTGCAGTCTGACAGGAACTTTTGCACTGAAATAGTCGAACAATGAACGT
GAAAAATTTAAcaacaatttctttaattttgttttggtttgaaaCCCAAA
TCATAATCATTGCTTCAAAGAGATTCGAAATTGTTGGACGAAACAAAATA
CCAAACAAAACACCTTACTCGACAGTTGATGTCAAATTTGAGCAACATTG
TTTCTCAAAATGTCATCATGTGATAACTTGCTTCTCTTTTCTCGTCCAGA
GAACAAGCAACGCAATGCCAATTCGTTGTCATTTTTATAACAGCACAACC
ACTGGTTTGACTGGCAGCCAAGCAACAGAAGATAACACAATATTATACAC
AGCTCAGATTCAGGATTGTCAGGATTTATATAACTCTGGCCACAAGAGCT
CTGGTGTTTACTCCATAAATCTTCTTGGTAAAGGTCAAAGAGATATCAGA
TGTGATATGGAAATTGAAGGTGGTGGTTGGACTGTGATACTTTACCGAAC
GACTAGTCAACATAATTGGAATGTTGGATGGAATCAATATAAAAACGGTA
TCGGTGAAATTACTGGTGATTTTTATCTTGGAAATGAACTTGTTCATCAA
ATCACAGATTCTGGTCAATATGAACTGTatttcagaacacaaatagagGT
TGCTAATTCACCTGCAAACGCAGATAACACATATTTTGGCTGGCACGGAA
ATTTTCATGTTGCAAATGAAGCAGATTACTATCGCCTGACAGTAGGTGAC
ATCAAACCAGGGTCACAGCCCCAAATCAATGATTTGAACGGGATGCAATT
CACAACAAAAGACGTGAAAAGAGATAATCACCACCACAATTGTGCAAGCT
TCAAATTATCTGCATTTTGGTGGGATGGTTGTGGTAGAATACAACCATTT
GGTCCTTATTTACATTCAGATTCTCAAAAATGTATGGGGATTAATGTTAG
TGGTGTAGGAAGGTTATGCACTTTGAACTTTCAAATGCTGGTACGACGAA
AATAAAGAGACATAACAGGAATCATTTGTGAATAAAAACTATTGATTACT
GACTTGCACCGCAATGACTGTGTTAG

Coding sequence (CDS) from alignment at sc0000290:211295..212370

>TCONS_00018181 ID=TCONS_00018181|Name=TCONS_00018181|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000290:211295..212370 (Clytia hemisphaerica)
ATGAACGTGAAAAATTTAAcaacaatttctttaattttgttttggtttga
aaCCCAAATCATAATCATTGCTTCAAAGAGATTCGAAATTGTTGGACGAA
ACAAAATACCAAACAAAACACCTTACTCGACAGTTGATGTCAAATTTGAG
CAACATTGTTTCTCAAAATGTCATCATGTGATAACTTGCTTCTCTTTTCT
CGTCCAGAGAACAAGCAACGCAATGCCAATTCGTTGTCATTTTTATAACA
GCACAACCACTGGTTTGACTGGCAGCCAAGCAACAGAAGATAACACAATA
TTATACACAGCTCAGATTCAGGATTGTCAGGATTTATATAACTCTGGCCA
CAAGAGCTCTGGTGTTTACTCCATAAATCTTCTTGGTAAAGGTCAAAGAG
ATATCAGATGTGATATGGAAATTGAAGGTGGTGGTTGGACTGTGATACTT
TACCGAACGACTAGTCAACATAATTGGAATGTTGGATGGAATCAATATAA
AAACGGTATCGGTGAAATTACTGGTGATTTTTATCTTGGAAATGAACTTG
TTCATCAAATCACAGATTCTGGTCAATATGAACTGTatttcagaacacaa
atagagGTTGCTAATTCACCTGCAAACGCAGATAACACATATTTTGGCTG
GCACGGAAATTTTCATGTTGCAAATGAAGCAGATTACTATCGCCTGACAG
TAGGTGACATCAAACCAGGGTCACAGCCCCAAATCAATGATTTGAACGGG
ATGCAATTCACAACAAAAGACGTGAAAAGAGATAATCACCACCACAATTG
TGCAAGCTTCAAATTATCTGCATTTTGGTGGGATGGTTGTGGTAGAATAC
AACCATTTGGTCCTTATTTACATTCAGATTCTCAAAAATGTATGGGGATT
AATGTTAGTGGTGTAGGAAGGTTATGCACTTTGAACTTTCAAATGCTGGT
ACGACGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010211XLOC_010211Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018181-proteinTCONS_00018181-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018181-exon-sc0000290-1491911889:211295..212370TCONS_00018181-exon-sc0000290-1491911889:211295..212370Clytia hemisphaericaexon
TCONS_00018181-exon-sc0000290-1510915933:211295..212370TCONS_00018181-exon-sc0000290-1510915933:211295..212370Clytia hemisphaericaexon
TCONS_00018181-exon-sc0000290-1575043694:211295..212370TCONS_00018181-exon-sc0000290-1575043694:211295..212370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:211295..212370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0399036	0	0.0453285	0	0.0436064	0	0.0498681	0	0.0442908	0	0.0278946	5.25965	5.13397	0.269266	0.284815	0.252769	0.155252	4.61173	6.21378	0.577822	0.25729	0.621666	0.298622	0.749502	1.33951	0.0806878	0.0661611	0	0.0483542
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00018181 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.815e-26
Identity = 67/189 (35.45%), Postives = 97/189 (51.32%), Query Frame = -1 
Query:  162 AQIQDCQDLYNSGHKSSGVYSINLLG-KGQRDIRCDMEIEGGGWTVILYRTTSQHNWNVGWNQYKNGIGEITGDFYLGNELVHQITDSGQYELYFRTQIEVANSPANADNTYFGWHGNFHVANEADYYRLTVGDIKPGSQPQINDLNGMQFTTKDVKRDNHHHNCASFKLSAFWWDGCGRIQPFGPYLH 725
            ++ +DC D+  SG +  GVYS+          + CDM  +GGGWTV   R     N+  GW+ Y++G G +TG+ +LG + +H +T    YEL+   + +  N  A A    FG  G F V  E D Y LTV D    +   +   +GM+FTTKD   D+  +NCA+F   A+W+  C      G YL 
Sbjct:  239 SRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLE-DFENGTAYARYGSFGV-GLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLR 425
The following BLAST results are available for this feature:
BLAST of TCONS_00018181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD16.815e-2635.45Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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