TCONS_00018170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018170
Unique NameTCONS_00018170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018170 ID=TCONS_00018170|Name=TCONS_00018170|organism=Clytia hemisphaerica|type=transcript|length=715bp
NNGAATTGCAAAACCATTCAAATGACTAGGAAGAGTAATTGTTGTTAAGA
ATGCTTTAAATTGCTAAAGAAGATAACCCCTTAATGGGACAAAGGCGATT
CTTTAAAGTTTATTAGGatttttgaataataatatAACATATTATCTACT
ATTTAATCGTTTTAGATACAATTTTTACGATGTAAATAATTTAGATTAAC
CTTTATCATCTTACAACAACAATCAACAGagcaaaaaaagctttttattg
CCCATTTTTTCTGCATATTGGGAAAATATTTgacaaatttaaagttttta
ctATAACAAGCCAAGATGAagtgcaaattttatttttttcctattcTATT
CACAATATTTTGTAAGGAAACTGAAGGAAAATAAGATTTTGAAGCTTAAT
TTTGTCGATGATGAGCATTTTTCAAATATGTAAATGAAAATAACACAATG
AATAAATGCAAAATCCAACCCTTGTTTGTAATTTTATCCAGAATGACTTC
TTTAGACCaataatcatcaaaacaaattcCGATCCAACGGTGTATGATAA
TTCTATTCTGTTCCATGGTTGAGGAAAACTACCATTACTTGATTGTGCTC
CCACACTAAATTATTACGAGTTAAATTTAGTTTTGGTAGCTTTCTGTTTT
GCAGATTGGATCAATGAATGATTTCCTTCTGAGGATAAGGTCACGCAATC
CCAGTTTTACTGTTT
Run BLAST on NCBI

transcript from alignment at sc0000290:43568..44282

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018170 ID=TCONS_00018170|Name=TCONS_00018170|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000290:43568..44282 (Clytia hemisphaerica)
AAACAGTAAAACTGGGATTGCGTGACCTTATCCTCAGAAGGAAATCATTC
ATTGATCCAATCTGCAAAACAGAAAGCTACCAAAACTAAATTTAACTCGT
AATAATTTAGTGTGGGAGCACAATCAAGTAATGGTAGTTTTCCTCAACCA
TGGAACAGAATAGAATTATCATACACCGTTGGATCGgaatttgttttgat
gattattGGTCTAAAGAAGTCATTCTGGATAAAATTACAAACAAGGGTTG
GATTTTGCATTTATTCATTGTGTTATTTTCATTTACATATTTGAAAAATG
CTCATCATCGACAAAATTAAGCTTCAAAATCTTATTTTCCTTCAGTTTCC
TTACAAAATATTGTGAATAgaataggaaaaaaataaaatttgcactTCAT
CTTGGCTTGTTATagtaaaaactttaaatttgtcAAATATTTTCCCAATA
TGCAGAAAAAATGGGcaataaaaagctttttttgctCTGTTGATTGTTGT
TGTAAGATGATAAAGGTTAATCTAAATTATTTACATCGTAAAAATTGTAT
CTAAAACGATTAAATAGTAGATAATATGTTatattattattcaaaaatCC
TAATAAACTTTAAAGAATCGCCTTTGTCCCATTAAGGGGTTATCTTCTTT
AGCAATTTAAAGCATTCTTAACAACAATTACTCTTCCTAGTCATTTGAAT
GGTTTTGCAATTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010200XLOC_010200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018170-exon-sc0000290-1491911889:43568..44282TCONS_00018170-exon-sc0000290-1491911889:43568..44282Clytia hemisphaericaexon
TCONS_00018170-exon-sc0000290-1510915933:43568..44282TCONS_00018170-exon-sc0000290-1510915933:43568..44282Clytia hemisphaericaexon
TCONS_00018170-exon-sc0000290-1575043694:43568..44282TCONS_00018170-exon-sc0000290-1575043694:43568..44282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:43568..44282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.17104	7.00144	2.33301	3.70438	0.448256	0.748946	0.649037	0.280307	0.583772	0.758207	0.326131	0.515579	0.164921	0.698218	0.0398131	0.207447	0.168532	0.116573	0	0	0.390713	0.470427	8.97148	5.2299	0	0	0.587798	0.763901	5.31557	5.9816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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