TCONS_00018135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018135
Unique NameTCONS_00018135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018135 ID=TCONS_00018135|Name=TCONS_00018135|organism=Clytia hemisphaerica|type=transcript|length=679bp
TGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTG
GTCAATGGACCAATAAGATTTAGTTTTTGTGCATAGATGAACATGCGACG
TGGAAAAGGGAAAGGAGTTGGCCAAGGCTCTACACTTAAGCAAACTTCTT
AGATGGGATTTGGCTTTTGTGGCTTGATGAACATTCAACGTGGAAAAAGA
AACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGATTTGA
CAGACGTGATGAATGGTATGCAAAGCAAATTTTGGATGACCGGAAGCTAA
GAACTTAAAGTAAGAACTTGTTGTTATctattttcagccaaaaatttgaa
caaatctATCATATTGTTGTCAGTCGCACCTTGGAAACAGAAGCTTTCAT
CTTCTCAgttggaaaaagttccaccggggctttgaTGTAGCTGCGTATGT
TTCAAATTCGATACATGGTTTCCATCGATTATGCTGACTGCATGGTTCGC
ACAGCAAACGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCATAAA
AGACCTATTAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAAAGGT
CGCTTGATCTTGacatcaacaaaaacaacatatAAATTATGAATTTGGAT
ATGTCACGCAAAGTTCATCGCGAATCAAA
Run BLAST on NCBI

transcript from alignment at sc0000290:32817..35437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018135 ID=TCONS_00018135|Name=TCONS_00018135|organism=Clytia hemisphaerica|type=transcript|length=2621bp|location=Sequence derived from alignment at sc0000290:32817..35437- (Clytia hemisphaerica)
TGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTG
GTCAATGGACCAATAAGTAAGACTACATTCATATTGGAAGACACTTTTAT
TTGCTTTTTGGGCCTACCTAGAGGTACTATAAATTAACCTGTGTTCGTCC
GTTCGTATGAATTTTGTGATTTTTCTGAACAAAACCAGGCTTTTTTTGTT
TCGAGCGTAACACTCTTACTCTTTGGAATTTAGAGAGTTTCAAACCTACT
TACGCATTAAGCCAACATCTGTGTTTTAAACATTCTTTTACTTGACCCAG
TGCTGAAGTTAAATCTTAGATGAAATCTATATAAATCACAATTTTCAGGA
TTTAGTTTTTGTGCATAGATGAACATGCGACGTGGAAAAGGGAAAGGAGT
TGGCCAAGGCTCTACACTTAAGCAAACTTCTTAGATGGGTAAGACTTCAT
CTTGAAAGATATTTTATTGAACTTTCATGTTGATATCAATTGCTTTTTCC
GAACNATCATCTTGAAAGATATTTTATTGAACTTTCATTGATATCAATTG
CCTTTTCTGAACAAAACTAGTCCACCTTTGTTTCGAGCGTAAAACTCTTA
CTCTTTGGGATATAGTGAGTTTCAAACCTATGCATTAAAGCCAATCATCT
GTGTTTTAAACATCCTTTTACTTGACCCAGTGCTGAAGTTAAATCTTAAA
CGAAATCTATATAAATCACAATTTTCAGGATTTGGCTTTTGTGGCTTGAT
GAACATTCAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAG
AAAACTTCTTGGATGGGTAAGACTTCATTCATCATTATTTTTTAATAAAA
CTAGGCTACGTCATATTCCCCTTTGTTTCGAACGTAAACTCCTACATACT
CTTCAAAACTAAGGTCTAAAAAACTAGGAGCTGTGTATTGTGTAGACTAG
AACAAAAACGAAAACGTTGAAAAATATCACCATAACCAGGCTTAAGAAAC
AGCATCGAACAAAATGGATAAACTTAATACCTCGTAAAATGTTCTCATTC
CATGAAAAAAGTAATAGTAGTTGCAAAACCTTTTAATCAAACCCAGGTAA
CTTACTCTTAGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTT
GGATGACCGGAAGCTAAGAACTTAAAGTAAGAACTTGTTGTTATCTATTT
TCAGCCAAAAATTTGAACAAATCTATCATATTGTTGTCAGTCGCACCTTG
GAAACAGAAGCTTTCATCTTCTCAGTTGGAAAAAGTTCCACCGGGGCTTT
GATGTAGCTGCGTATGTTTCAAATTCGATACATGGTAATAAAAAATGCCT
ATCAGATTTTGTATAAGGTTTTTCATTCCTGTTGATTCATATAGTTTGAC
ATCTTTTTATAAGAAACTCAATTTTAGCTTCCGTCCTGCTTTTTCTTAGC
TTTCTAGCTCTATGTTTGAAAAATTTGGTGCGATCACCCCTGACATTATA
TCATTTTTATGTTTATTTGGTTAGGAGCTGTCGTTTGCCATGGTTAGATT
TAAAAAATTCTATTACGAGATGATAAAAAAAAAATGGCTAATTTCAGAGC
TCAAGCCTAAGCAGTCTAGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTC
CTGTCTTTTTCCCTTTTTAATAGAAAGGAAAACACAATGTATCGGACAGT
TTTGGACACATTTAGCAATCAAACTTGTCTACCATTTTGTCTGTGATGAT
ACCAAAAATAATTTTAGTGTCTTTATTCAGCTTTACTAAAACGGTCTAAT
TGTTGTCTTATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTCGCA
CAGCAAACGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCATAAAA
GACCTATTAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAAAGGTA
AGGCAATACTTACATGATTTCACTTTTTATCCGTGATATTCGAGACGTAA
GGTTTTATACGGAAGCACACATTGAACTTTTGAACTCGAAAAGTAAAACT
AGTTGCAAACGTCTGGGCTAGTTTTGAGTGTTTCCGTATAAAACATTACG
TCATGAATATAATAACTGTTGAGTAATGAGACTTAATAAAACTGACGTTA
TAAATGGGAAATCTCTCGACTAAACCAAAAATGAAATAATTCATCAAAAG
CATATTTTCTGTGTGTCAGAAGTTTAATCCCAATTTCACGAGCATTCTTA
CTAATCGTTGTCTAGTGAGGGATTTGCATTTTAGTTGAGAAAAGAAGGTA
AAATAATTGTCAACAAAACCCATGTCTTTACTCCGAAAGATTCATGATAG
GCACCGTTGCAATGTCTTCCACGGACTCAACAACTAATTGGTCACAAGTG
ACCTATTGATCGATTTTACTTCACGACCAATCAGCTGTCGAGTCTGTGAT
GTAATGTCAAAAGACATTACAACGGCGCATATCATCAAATGTAATTGTTA
ACAAATCTTGATCATGATGAAGTATTTCTCTCATTTTCAGGTCGCTTGAT
CTTGACATCAACAAAAACAACATATAAATTATGAATTTGGATATGTCACG
CAAAGTTCATCGCGAATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010181XLOC_010181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018135-exon-sc0000290-1575043694:35372..35437TCONS_00018135-exon-sc0000290-1575043694:35372..35437Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1575043694:35000..35089TCONS_00018135-exon-sc0000290-1575043694:35000..35089Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1575043694:34622..34709TCONS_00018135-exon-sc0000290-1575043694:34622..34709Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1575043694:34104..34326TCONS_00018135-exon-sc0000290-1575043694:34104..34326Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1575043694:33491..33621TCONS_00018135-exon-sc0000290-1575043694:33491..33621Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1575043694:32817..32897TCONS_00018135-exon-sc0000290-1575043694:32817..32897Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:35372..35437TCONS_00018135-exon-sc0000290-1510915933:35372..35437Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:35000..35089TCONS_00018135-exon-sc0000290-1510915933:35000..35089Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:34622..34709TCONS_00018135-exon-sc0000290-1510915933:34622..34709Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:34104..34326TCONS_00018135-exon-sc0000290-1510915933:34104..34326Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:33491..33621TCONS_00018135-exon-sc0000290-1510915933:33491..33621Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1510915933:32817..32897TCONS_00018135-exon-sc0000290-1510915933:32817..32897Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:35372..35437TCONS_00018135-exon-sc0000290-1491911889:35372..35437Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:35000..35089TCONS_00018135-exon-sc0000290-1491911889:35000..35089Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:34622..34709TCONS_00018135-exon-sc0000290-1491911889:34622..34709Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:34104..34326TCONS_00018135-exon-sc0000290-1491911889:34104..34326Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:33491..33621TCONS_00018135-exon-sc0000290-1491911889:33491..33621Clytia hemisphaericaexon
TCONS_00018135-exon-sc0000290-1491911889:32817..32897TCONS_00018135-exon-sc0000290-1491911889:32817..32897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:32817..35437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27912	0.887918	0.962056	0.597504	0	0	0.426938	0	1.17235	0.739355	0	0.0416896	0.307117	1.3287	0	9.67533e-08	0.994579	0	0.209791	0	0.0483407	0.680936	0.141714	1.53619	0	0	0	0	0.536556	1.98905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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