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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018129 ID=TCONS_00018129|Name=TCONS_00018129|organism=Clytia hemisphaerica|type=transcript|length=928bp
CGGATATAAaagcagaaaaaaataaatcaaaatacaTTAGGTTTATATCT
ATCTCTTCTGGGAAAatgtcttgtcttgtcttgtctcGTAAGGTCTTGCA
GAAGAGCTCTAGTTTAGAGAGCCGCTTTTCTACTATACTTATTCTATTAG
AAAGTTGGTagttaaagtctttttttttgcattggTATCAAAAGAGTGCA
AGTATTGACTTCCGAGAGCCTACTTTCCTGTCTACTCCACAGTGGCATAA
AAGTCTTAACTAAAGCTTAGTTCAATTTCAGGAAAATGTGCCAAGGCTTG
TTTTACACGTCATACCAAACATCAAGAGATGTGGCTTCAACTTTCTATGC
TCTTTCAGCCATTGCTGCAGCATTTGGGAACACTTTCTGCTTGGTGGTGT
TGTGGCAACCCTCCTTTCGATCCAAATCATACAAAATATTGTCTTCTCTA
GCACTTAGTGATTGCTGCACAGGGTATGTAGCACTTCCATTGGTATGTTG
GATGATTCAAAATGGTTACCAAGTGAACGAGACAAAGTGCATCATTGAAG
ATATTTATTCCTTGACAGCGATCTGGATGGTCAGCGTTTCGTCGTGTTCC
ATTGTGTTTATTGCGTACGATCGATTTCTACTCATCACCAAGTTTGCTAA
TTACCACAACATTTTAACCAACCGCAAAGTCACACTCATCATTTCATCTT
ATTGGATCATCATCTTTTTTCTTGCCTTTGGAACCAACTACAATGTTTAT
TTTTACGTATGGTACAATTTCGCAGCCATTACTTTACCGATCATTTTCCT
GTTTTGTAGTTATTTTTACATTTGGAAAGCGGTCAAGCAGAGTCGGCGAA
GAGTTGAAACCAACACTGTCAGTGATCGACGTCAAACACAACGTCAAATC
AAACTTGCCCACAAAGTCTCCATCATCA Run BLAST on NCBI protein sequence of TCONS_00018129-protein >TCONS_00018129-protein ID=TCONS_00018129-protein|Name=TCONS_00018129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MCQGLFYTSYQTSRDVASTFYALSAIAAAFGNTFCLVVLWQPSFRSKSYK
ILSSLALSDCCTGYVALPLVCWMIQNGYQVNETKCIIEDIYSLTAIWMVS
VSSCSIVFIAYDRFLLITKFANYHNILTNRKVTLIISSYWIIIFFLAFGT
NYNVYFYVWYNFAAITLPIIFLFCSYFYIWKAVKQSRRRVETNTVSDRRQ
TQRQIKLAHKVSII Run BLAST on NCBI transcript from alignment at sc0000290:294939..296388+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018129 ID=TCONS_00018129|Name=TCONS_00018129|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at sc0000290:294939..296388+ (Clytia hemisphaerica)
CGGATATAAaagcagaaaaaaataaatcaaaatacaTTAGGTTTATATCT
ATCTCTTCTGGGAAAatgtcttgtcttgtcttgtctcGTAAGGTCTTGCA
GAAGAGCTCTAGTTTAGAGAGCCGCTTTTCTACTATACTTATTCTATTAG
AAAGTTGGTagttaaagtctttttttttgcattggTATCAAAAGAGTGCA
AGTATTGACTTCCGAGAGCCTACTTTCCTGTCTACTCCACAGTGGCATAA
AAGTCTTAACTAAAGCTTAGTTCAATTTCAGGAAAATGTGCCAAGGCTTG
TTTTACACGTCATACCAAACATCAAGAGATGTGGCTTCAACTTTCTATGC
TCTTTCAGCCATTGCTGCAGCATTTGGGAACACTTTCTGCTTGGTGGTGT
TGTGGCAACCCTCCTTTCGATCCAAATCATACAAAATATTGTCTTCTCTA
GCACTTAGGTAAGCTAAGCATAATCAACAATTTCACATATTATTTCACAC
TTAAGTTTAAGTAAGGCACGGtcaaaaaagggcaaatatgGTGTTATCTA
AAACTAAGTAGGGGAATTTCAAATTCCATTTTAACAGTTAATAGTATTTT
CTAGAGGAATTCAATTCCTGTATAGGAAGGTTTAGATAACGAAATTTTTC
AAGACCGCGTCAAAAGATTTTACCATTGCAGTGGGTTTGCAATGGTAAAC
CAGTCCTCGTTTttggggattggcgggtccaaccaaaatatttttagctt
tacgATGCAGCATATCAAAgaccgactatcattcctctccaaGTGAAAAT
TGGCCGGCTccttagagctttagcgtgggcagcCGCCAATCCGCCTtcag
aatatcagataaggTGGTGGGTGTCTTTGTCttgttctatttttatttta
tttttgacgtttttgattCTTACGCGAATAGAATTTATCGGTGACAAGGA
TCATTTTATTGTTACTTTATCTGTTTCTAGTGATTGCTGCACAGGGTATG
TAGCACTTCCATTGGTATGTTGGATGATTCAAAATGGTTACCAAGTGAAC
GAGACAAAGTGCATCATTGAAGATATTTATTCCTTGACAGCGATCTGGAT
GGTCAGCGTTTCGTCGTGTTCCATTGTGTTTATTGCGTACGATCGATTTC
TACTCATCACCAAGTTTGCTAATTACCACAACATTTTAACCAACCGCAAA
GTCACACTCATCATTTCATCTTATTGGATCATCATCTTTTTTCTTGCCTT
TGGAACCAACTACAATGTTTATTTTTACGTATGGTACAATTTCGCAGCCA
TTACTTTACCGATCATTTTCCTGTTTTGTAGTTATTTTTACATTTGGAAA
GCGGTCAAGCAGAGTCGGCGAAGAGTTGAAACCAACACTGTCAGTGATCG
ACGTCAAACACAACGTCAAATCAAACTTGCCCACAAAGTCTCCATCATCA
Coding sequence (CDS) from alignment at sc0000290:294939..296388+ >TCONS_00018129 ID=TCONS_00018129|Name=TCONS_00018129|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000290:294939..296388+ (Clytia hemisphaerica)
ATGTGCCAAGGCTTGTTTTACACGTCATACCAAACATCAAGAGATGTGGC
TTCAACTTTCTATGCTCTTTCAGCCATTGCTGCAGCATTTGGGAACACTT
TCTGCTTGGTGGTGTTGTGGCAACCCTCCTTTCGATCCAAATCATACAAA
ATATTGTCTTCTCTAGCACTTAGTGATTGCTGCACAGGGTATGTAGCACT
TCCATTGGTATGTTGGATGATTCAAAATGGTTACCAAGTGAACGAGACAA
AGTGCATCATTGAAGATATTTATTCCTTGACAGCGATCTGGATGGTCAGC
GTTTCGTCGTGTTCCATTGTGTTTATTGCGTACGATCGATTTCTACTCAT
CACCAAGTTTGCTAATTACCACAACATTTTAACCAACCGCAAAGTCACAC
TCATCATTTCATCTTATTGGATCATCATCTTTTTTCTTGCCTTTGGAACC
AACTACAATGTTTATTTTTACGTATGGTACAATTTCGCAGCCATTACTTT
ACCGATCATTTTCCTGTTTTGTAGTTATTTTTACATTTGGAAAGCGGTCA
AGCAGAGTCGGCGAAGAGTTGAAACCAACACTGTCAGTGATCGACGTCAA
ACACAACGTCAAATCAAACTTGCCCACAAAGTCTCCATCATCATGTGCCA
AGGCTTGTTTTACACGTCATACCAAACATCAAGAGATGTGGCTTCAACTT
TCTATGCTCTTTCAGCCATTGCTGCAGCATTTGGGAACACTTTCTGCTTG
GTGGTGTTGTGGCAACCCTCCTTTCGATCCAAATCATACAAAATATTGTC
TTCTCTAGCACTTAGTGATTGCTGCACAGGGTATGTAGCACTTCCATTGG
TATGTTGGATGATTCAAAATGGTTACCAAGTGAACGAGACAAAGTGCATC
ATTGAAGATATTTATTCCTTGACAGCGATCTGGATGGTCAGCGTTTCGTC
GTGTTCCATTGTGTTTATTGCGTACGATCGATTTCTACTCATCACCAAGT
TTGCTAATTACCACAACATTTTAACCAACCGCAAAGTCACACTCATCATT
TCATCTTATTGGATCATCATCTTTTTTCTTGCCTTTGGAACCAACTACAA
TGTTTATTTTTACGTATGGTACAATTTCGCAGCCATTACTTTACCGATCA
TTTTCCTGTTTTGTAGTTATTTTTACATTTGGAAAGCGGTCAAGCAGAGT
CGGCGAAGAGTTGAAACCAACACTGTCAGTGATCGACGTCAAACACAACG
TCAAATCAAACTTGCCCACAAAGTCTCCATCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018129-exon-sc0000290-1491911889:294939..295396 | TCONS_00018129-exon-sc0000290-1491911889:294939..295396 | Clytia hemisphaerica | exon |
| TCONS_00018129-exon-sc0000290-1510915933:294939..295396 | TCONS_00018129-exon-sc0000290-1510915933:294939..295396 | Clytia hemisphaerica | exon |
| TCONS_00018129-exon-sc0000290-1575043694:294939..295396 | TCONS_00018129-exon-sc0000290-1575043694:294939..295396 | Clytia hemisphaerica | exon |
| TCONS_00018129-exon-sc0000290-1491911889:295919..296388 | TCONS_00018129-exon-sc0000290-1491911889:295919..296388 | Clytia hemisphaerica | exon |
| TCONS_00018129-exon-sc0000290-1510915933:295919..296388 | TCONS_00018129-exon-sc0000290-1510915933:295919..296388 | Clytia hemisphaerica | exon |
| TCONS_00018129-exon-sc0000290-1575043694:295919..296388 | TCONS_00018129-exon-sc0000290-1575043694:295919..296388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:294939..296388 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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