TCONS_00018121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018121
Unique NameTCONS_00018121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018121 ID=TCONS_00018121|Name=TCONS_00018121|organism=Clytia hemisphaerica|type=transcript|length=561bp
TTTCAAAGAGCTGATGGCTGACAGGCTTATAAAATCAATAAGTGATCCTT
GACCACCTTTGATTACTACTAaccattattgattacttcgatcacaatcA
AATGTTCGACTGGTAACATCTGTGAGTGAGTACAACTTACTTGCTGTATA
TATGAAGAGAGTGACAAAATTCCACACATATACTTACAAGCATCCAAAGT
TTATTTACATTTATATGAAGATAATTGCTACAAAACTGAATAAACAATAC
AATCATCTACACTCCATTTAGAAACGCACTCCACGTACTCAACCTTCGct
tcgccattttgttttgttttgtactTTTGCTTTCTTCGCCTACTTTTCCT
TCTGCGAAATACCGCGGTGCTTTCTGGGTAATATTATTTAATATACACAC
ACGACCTTTCGTTCATGAAAACTTCAACAAATCGTTCAACACCTCGGGTA
TTTCGTTCATAACCTCGCGCATTTCGTTCAATACCTACGCATTTCGTTCA
AAGGTTCGGCACTTCGTTCAAAGCCGTGCGCACATCGTTCAAAACCGAGA
Tttcattattg
Run BLAST on NCBI

transcript from alignment at sc0000287:325186..325746

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018121 ID=TCONS_00018121|Name=TCONS_00018121|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0000287:325186..325746 (Clytia hemisphaerica)
caataatgaaATCTCGGTTTTGAACGATGTGCGCACGGCTTTGAACGAAG
TGCCGAACCTTTGAACGAAATGCGTAGGTATTGAACGAAATGCGCGAGGT
TATGAACGAAATACCCGAGGTGTTGAACGATTTGTTGAAGTTTTCATGAA
CGAAAGGTCGTGTGTGTATATTAAATAATATTACCCAGAAAGCACCGCGG
TATTTCGCAGAAGGAAAAGTAGGCGAAGAAAGCAAAagtacaaaacaaaa
caaaatggcgaagCGAAGGTTGAGTACGTGGAGTGCGTTTCTAAATGGAG
TGTAGATGATTGTATTGTTTATTCAGTTTTGTAGCAATTATCTTCATATA
AATGTAAATAAACTTTGGATGCTTGTAAGTATATGTGTGGAATTTTGTCA
CTCTCTTCATATATACAGCAAGTAAGTTGTACTCACTCACAGATGTTACC
AGTCGAACATTTgattgtgatcgaagtaatcaataatggtTAGTAGTAAT
CAAAGGTGGTCAAGGATCACTTATTGATTTTATAAGCCTGTCAGCCATCA
GCTCTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010172XLOC_010172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018121-exon-sc0000287-1491911889:325186..325746TCONS_00018121-exon-sc0000287-1491911889:325186..325746Clytia hemisphaericaexon
TCONS_00018121-exon-sc0000287-1510915933:325186..325746TCONS_00018121-exon-sc0000287-1510915933:325186..325746Clytia hemisphaericaexon
TCONS_00018121-exon-sc0000287-1575043694:325186..325746TCONS_00018121-exon-sc0000287-1575043694:325186..325746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:325186..325746 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0982852	0.228237	0	0	0	0	0	0	0	0	0	0	0	0.0572313	0	0.075662	0	0	0	0	0	0	0	0	0	0	0	0.335604	0.113976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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