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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018114 ID=TCONS_00018114|Name=TCONS_00018114|organism=Clytia hemisphaerica|type=transcript|length=927bp
TCGATTTCTTCATCGAATTCTGATAGCTGAACATCCTTGATGACGATAAT
TGTTGCAGCTTTGATTTCTTCTGGTGTTAGGTAAGGTTTTCCTTTGTCTC
GTTTCTTCTTGGAATTCTCACGTTTCCTTTTAGCTTCTGCTCGAAGGTTA
CGGGTGTAACGAAGAACCCAAGCCATGTAACGTACAATCTTGTTAAAGTT
TGAGTAATCTGTGTAAGGTAACCAGGTTGATTTGTCCTGTCTAATCatta
aaatgaaggtttttctgATTTCGGTATCACCAGGCTcgatttcttcaatt
ttcttgtcCTTCCAAGTTGATTCGTCTGCCATTAAGAATGATGGTCCTTT
GAGCCAACTTCGTTTTTTGTTTCCATGAAGTAGTTCTTCTACGCTGAAGA
CTCCTCTTGTGGTAATGTCACTAGGATTTTCTTCACCATTAACGTGATGC
CATTGTGTAGGTTGTGTCACTTCTCGAATTTCTGAGACTCGGTTTGCTAC
GAAGATCTTGAAACGATTCCTTTCATTTGTTATGTATTGGAGGGTCAGTG
TCGAGTCACTCCAAAAATGACTGTCCTCGATTGGCAAGTCAATTTCTTTG
ATGATTAATCTGTATAATCGTACTGCAATTGTTGCTGCACTTAATTCCAA
TCTTGGTAGGGGAACTTGTTTTGTTGGTGCAACTCTTCCTTTGGCTGATA
CAAAGCTAACGTTGATCGGTTCTGTGGTTGTTCTGAGATAAGCAACTGCA
CCATAGGCATTTTCTGATGCATCGCCAAAGATATGTAGTTGAATCTTGGA
TGATATTGGAATGTTGTAGCATCTCTCCAACTTAAACATGTCGATAGTGG
ATAGGCCAGATCGCCATTTGTTCCACTTTCTTTGAATTTCGTAGTTGACT
GGTTCATCCCAATTTGTGCCATCTTTC Run BLAST on NCBI protein sequence of TCONS_00018114-protein >TCONS_00018114-protein ID=TCONS_00018114-protein|Name=TCONS_00018114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
KDGTNWDEPVNYEIQRKWNKWRSGLSTIDMFKLERCYNIPISSKIQLHIF
GDASENAYGAVAYLRTTTEPINVSFVSAKGRVAPTKQVPLPRLELSAATI
AVRLYRLIIKEIDLPIEDSHFWSDSTLTLQYITNERNRFKIFVANRVSEI
REVTQPTQWHHVNGEENPSDITTRGVFSVEELLHGNKKRSWLKGPSFLMA
DESTWKDKKIEEIEPGDTEIRKTFILMIRQDKSTWLPYTDYSNFNKIVRY
MAWVLRYTRNLRAEAKRKRENSKKKRDKGKPYLTPEEIKAATIIVIKDVQ
LSEFDEEI Run BLAST on NCBI transcript from alignment at sc0000287:243398..244324 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018114 ID=TCONS_00018114|Name=TCONS_00018114|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at sc0000287:243398..244324 (Clytia hemisphaerica)
GAAAGATGGCACAAATTGGGATGAACCAGTCAACTACGAAATTCAAAGAA
AGTGGAACAAATGGCGATCTGGCCTATCCACTATCGACATGTTTAAGTTG
GAGAGATGCTACAACATTCCAATATCATCCAAGATTCAACTACATATCTT
TGGCGATGCATCAGAAAATGCCTATGGTGCAGTTGCTTATCTCAGAACAA
CCACAGAACCGATCAACGTTAGCTTTGTATCAGCCAAAGGAAGAGTTGCA
CCAACAAAACAAGTTCCCCTACCAAGATTGGAATTAAGTGCAGCAACAAT
TGCAGTACGATTATACAGATTAATCATCAAAGAAATTGACTTGCCAATCG
AGGACAGTCATTTTTGGAGTGACTCGACACTGACCCTCCAATACATAACA
AATGAAAGGAATCGTTTCAAGATCTTCGTAGCAAACCGAGTCTCAGAAAT
TCGAGAAGTGACACAACCTACACAATGGCATCACGTTAATGGTGAAGAAA
ATCCTAGTGACATTACCACAAGAGGAGTCTTCAGCGTAGAAGAACTACTT
CATGGAAACAAAAAACGAAGTTGGCTCAAAGGACCATCATTCTTAATGGC
AGACGAATCAACTTGGAAGgacaagaaaattgaagaaatcgAGCCTGGTG
ATACCGAAATcagaaaaaccttcattttaatGATTAGACAGGACAAATCA
ACCTGGTTACCTTACACAGATTACTCAAACTTTAACAAGATTGTACGTTA
CATGGCTTGGGTTCTTCGTTACACCCGTAACCTTCGAGCAGAAGCTAAAA
GGAAACGTGAGAATTCCAAGAAGAAACGAGACAAAGGAAAACCTTACCTA
ACACCAGAAGAAATCAAAGCTGCAACAATTATCGTCATCAAGGATGTTCA
GCTATCAGAATTCGATGAAGAAATCGA Coding sequence (CDS) from alignment at sc0000287:243398..244324 >TCONS_00018114 ID=TCONS_00018114|Name=TCONS_00018114|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000287:243398..244324 (Clytia hemisphaerica)
AAAGATGGCACAAATTGGGATGAACCAGTCAACTACGAAATTCAAAGAAA
GTGGAACAAATGGCGATCTGGCCTATCCACTATCGACATGTTTAAGTTGG
AGAGATGCTACAACATTCCAATATCATCCAAGATTCAACTACATATCTTT
GGCGATGCATCAGAAAATGCCTATGGTGCAGTTGCTTATCTCAGAACAAC
CACAGAACCGATCAACGTTAGCTTTGTATCAGCCAAAGGAAGAGTTGCAC
CAACAAAACAAGTTCCCCTACCAAGATTGGAATTAAGTGCAGCAACAATT
GCAGTACGATTATACAGATTAATCATCAAAGAAATTGACTTGCCAATCGA
GGACAGTCATTTTTGGAGTGACTCGACACTGACCCTCCAATACATAACAA
ATGAAAGGAATCGTTTCAAGATCTTCGTAGCAAACCGAGTCTCAGAAATT
CGAGAAGTGACACAACCTACACAATGGCATCACGTTAATGGTGAAGAAAA
TCCTAGTGACATTACCACAAGAGGAGTCTTCAGCGTAGAAGAACTACTTC
ATGGAAACAAAAAACGAAGTTGGCTCAAAGGACCATCATTCTTAATGGCA
GACGAATCAACTTGGAAGgacaagaaaattgaagaaatcgAGCCTGGTGA
TACCGAAATcagaaaaaccttcattttaatGATTAGACAGGACAAATCAA
CCTGGTTACCTTACACAGATTACTCAAACTTTAACAAGATTGTACGTTAC
ATGGCTTGGGTTCTTCGTTACACCCGTAACCTTCGAGCAGAAGCTAAAAG
GAAACGTGAGAATTCCAAGAAGAAACGAGACAAAGGAAAACCTTACCTAA
CACCAGAAGAAATCAAAGCTGCAACAATTATCGTCATCAAGGATGTTCAG
CTATCAGAATTCGATGAAGAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018114-exon-sc0000287-1491911889:243398..244324 | TCONS_00018114-exon-sc0000287-1491911889:243398..244324 | Clytia hemisphaerica | exon |
| TCONS_00018114-exon-sc0000287-1510915933:243398..244324 | TCONS_00018114-exon-sc0000287-1510915933:243398..244324 | Clytia hemisphaerica | exon |
| TCONS_00018114-exon-sc0000287-1575043694:243398..244324 | TCONS_00018114-exon-sc0000287-1575043694:243398..244324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:243398..244324 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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