TCONS_00018097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018097
Unique NameTCONS_00018097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018097 ID=TCONS_00018097|Name=TCONS_00018097|organism=Clytia hemisphaerica|type=transcript|length=1397bp
CTTTAATATACTTCAATCCCTGGATAGCCACCTTGTATTAGATGTTTGGC
CCCTAAGATGTTATCTATACTTCATCAAAGACGCATTTAACCACCTGAAT
AATTGATATCCTCAACCAAGAGATTCGACTTTTTTCTTGAAAGTCCAATT
GCATTCTCGTGTTTTCTTTAatacaattttatattttatgtgtTATGTCA
TTTTTACTCTAATTTTACTCTAAGTATTGATGCAACAATGTCTTCTTCAT
ATGGACGACTGGTTAACGATTCCCCTGAAATTTATGCAAATTGTGTAATG
AAGCGAGAAAGGATTGGAGATTCATTCGccctttgtttgtttgtaaagAA
AGATATTGATATTGAAATTGGGACTGAGTTAAGGTATGACTATTGTTTTG
GGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTGAAT
GAAGAGCGTTACGGAAAACCCTGCACAATACCTGTTCCAACTACCTTTGA
AAATTTGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGTAG
AATATAGGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAGCA
GAACTGATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTGAA
CAATGGAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAG
AAACAGAACTTAACGACGGAGTGGCAGAACTTAACGATGGAGAATTAGAA
TTCAACAGTGGAAAAGCAGAACTGAACGATGAAGAAGCAGAACTGATCAC
TGTAATAACAGAACTCATTGATGGAGAAACAGAACTTATCGATGGAAAAT
CAGAACTGAACATTGGAGAAGCAGAACTGAACAATGGAGAAGCAGAGCCG
AATAGTGGAAAAGCAGAACTGATTGATGAAGTAACAGAACTCAACGACGG
AGTTGCAGAACTTAACAATAGAGAATCAGAAGTCAACAGTGGAAAAGCAG
AACTGAACGGTGTAGATGCAGAACTAAACGGTGGAGAAGCAGAACTAATC
GATGATGAAACCATTACTGAAGTTGAACAagtcaaatttgatgaagaCAT
TATACCACCTACCCCAGATAAAAAGgctttcaagagtTTGGTGAAAAACC
AATCTGTAAGaaTAATCACTGCGAAAGAAATGAGAGCCCAAATTGCAAAT
TATGCTGACATCATCGAAGCTGCCGTCAAACAGCCCGAATACAAGTATCT
TCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTCATATTTAAGgaTG
TATATCATGCCATAGGAAATGATGAATGTCTTTGCAAGGAAGAAGAGATG
TCGGACATTCCCATTGATTTCGACCGTGACGCACCAGATGATATATG
Run BLAST on NCBI

transcript from alignment at sc0000287:333786..338285+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018097 ID=TCONS_00018097|Name=TCONS_00018097|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at sc0000287:333786..338285+ (Clytia hemisphaerica)
CTTTAATATACTTCAATCCCTGGATAGCCACCTTGTATTAGATGTTTGGC
CCCTAAGATGTTATCTATACTTCATCAAAGACGCATTTAACCACCTGAAT
AATTGATATCCTCAACCAAGAGATTCGACTTTTTTCTTGAAAGTCCAATT
GCATTCTCGTGTTTTCTTTAatacaattttatattttatgtgtTATGTCA
TTTTTACTCTAATTTTACTCTAAGTATTGATGCAACAATGTCTTCTTCAT
ATGGACGACTGGTTAACGATTCCCCTGAAATTTATGCAAATTGTGTAATG
AAGCGAGAAAGGATTGGAGATTCATTCGccctttgtttgtttgtaaagAA
AGATATTGATATTGAAATTGGGACTGAGTTAAGGTAAAAATCTGGTTCTT
TGTAAGGTTAATCAGGTTTTTTTACAACTTGAACAACATTTTGAAGGGAG
CTCTAGCTGgaatatcagaaaaaataatAGTACAGTACTAACAAAAGTAC
TTAAATTAACTTAACTTAAATTAGTACTTAATAATTACTACTTTTAACTT
AAATATCTTGTGATCAAGCTATCAAAACCGTATAAAGCAGGCCTTGTTTC
AAGAACCTGGTTACAATTCACGAGAGTGATCTGCTTATTGCTTAATAGTT
TTTTAAGATTATCTTCTGAAAGTTAATTCTCTATTTCTTgactttcttga
aatttttcttcctGGGTACTGAGTTTTATCTTttgaatttgttaaaattt
tacatCGGAAAAGGAAATAGAAATTTTTGCAACAAATAATCTAGGTCTCC
GCATACCTTCAGTTGAGTTTAGCTTTTGTAACACAATTTAAGTTAGACCA
AAAAATATTTTNCCAACAAACAACTTGAACAACATTTTGAAGGGAGTTCT
AGCTGGAATACCAGAAAAAATAATAGTACAGTActaataaaatttttaac
ttaAATATCTTGTGATCAAGCTATCAAAACCGTATAAAGCAGGCCTTGTT
TCAAGAACCTGGTTACAATTCACGAGAGTGATCTGCTTATTGCTTAATAG
TTTTTTAAGATTATCTTCTGAAAGTTAATTCTCTATTTCTtgactttctt
taaatttttcttcctgGGTACTGAGTTTTATCTTttgaatttgttaaaat
tttacatCGGAAAAGGAAATAGAAATTTTTGCAACAAATAATCTAGGTCT
CCGCATACCTTCAGTTGAGTTTAGCTTTTGTAACACAATTTAAGTTagac
caaaaaatatttttgacttttgttgtaGGTATGACTATTGTTTTGGGTTA
CGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTGAATGAAGT
AAGTTTACTCTATATTATTCAGGCAGATCTTTAATGTTCATTTATACTGT
CAAAATTTTCACATCAAATTAAATCTGTGAATAACATGTTTCACGGTCGT
TTTTTTTATTCAGGAGCGTTACGGAAAACCCTGCACAATACCTGTTCCAA
CTACCTTTGAAAATTTGGTAAGACTTTTATATGTGACGATTCATAGCAAA
AAGAgtacaaaattttgttttcatgtgCTAGGCCTTGAGCGCAATTTACT
GATTTGgattaaatgtttttgaattttatttacaTTGATGCTCCCCCTTA
CAAAGAggtaaaaatgttgataaataTTTTATATGAGGCGAGTTGAAGTT
ATTATTTTGGAAGGTCTGATTGTTCAAAATTCTATGAAAGTATCGTAACT
TTTCGCTCTACAGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTG
AAGTAGAATATAGGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGA
GAAGCAGAACTGATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGA
ACTGAACAATGGAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTG
ATGAAGAAACAGAACTTAACGACGGAGTGGCAGAACTTAACGATGGAGAA
TTAGAATTCAACAGTGGAAAAGCAGAACTGAACGATGAAGAAGCAGAACT
GATCACTGTAATAACAGAACTCATTGATGGAGAAACAGAACTTATCGATG
GAAAATCAGAACTGAACATTGGAGAAGCAGAACTGAACAATGGAGAAGCA
GAGCCGAATAGTGGAAAAGCAGAACTGATTGATGAAGTAACAGAACTCAA
CGACGGAGTTGCAGAACTTAACAATAGAGAATCAGAAGTCAACAGTGGAA
AAGCAGAACTGAACGGTGTAGATGCAGAACTAAACGGTGGAGAAGCAGAA
CTAATCGATGATGAAACCATTACTGAAGTTGAACAagtcaaatttgatga
agaCATTATACCACCTACCCCAGATAAAAAGGTACAATTTAATTAAGTGA
AAATGTGTGTGAAAACTTTAATTTGGCTACTCATTCATGGTAAAGTTCTA
AgtgtttactttttcttttttctgagGGCTTAAACCATAGTTCCATGCTT
GAACTAAACAACCCTAGAACCAGTCTTTTGTAAGAACTCTTTCATAAGAA
GTAAGAATTATACATGTTTAATTTTTACGCCTTCTGGCAGAGGACCTTTT
TAAAAGCGCATAAATTCATTTAAAGTCAGTAAAAATCTCTATTTTACGAT
AtattttaggctttcaagagtTTGGTGAAAAACCAATCTGTAAGGTATAA
TGTTAATTATGTTAATtatgtaatattttttaaactgaACTTAATAAATG
GCATAAGCTATGCACTTGGTTCGAAtcatgtcatttatttttttatggcA
CACCCGTTATATATTTTTAAGCAATTCAAAGAATTACTGTCcagggtggc
agagcagcatatgcatttcgtccggGTTGACTCATCAGCATGGCCTACTG
CACCCTGGCTAGCCAGATCGAATCGGTAATCAGCAGATGTAGTGGACGGC
GTCCTTGACAACCATGCTATTTTTGAAAGACAAAATATTACTGCCCACTG
AGTTGATGATTGTGTAAGTGAATAGTTCTAACACAATATCTAATCCTTTG
CTtcacattttcttattttagaaTAATCACTGCGAAAGAAATGAGAGCCC
AAATTGCAAATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCCCGAA
TACAAGTAAATTTTTATGTTATTAGCTAATGATTTGAGTCTATTCACATC
GATTACGATTTTGATGCTTTCCCTGGCGACGGATCAAAACAGATACTTTT
GATTTTACCttctttgaaaaacattttcaataccTATTCCATGATGCAAA
ATTGtactattatttttattaggCTTAGCAGACCTGTTATCAGTGTTAGA
AGATACTTTAGAAATCGAAGGTATTTGGTAATTGGTTTTAGTaaacaaaa
tttaaagaaactgaacgttgtgtttttctaaccacttactattttttttt
cttgaatctACTTATTTTTTTAATCCTGTGAAATTGCACGACCAACTCGG
AttgataattcatttttaataaACAACAGTATGATAACCCAGTTTTTTTA
GCCTTACCCAGAAGCACCTTATACAAGTataattaatttgttgtttgtCT
ACTTTTCTTCAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAAGCAAC
CTGTCATATTTAAGGTATTGGTCATTTTGTGGTGATGCTTAACGtttgat
ttctaaaaaaatgtccTTTGAATCTGGAACTCTTGTAGAGAACTAGAAGT
ATATGTTAGAAATCAACGTTTTTCTGATTTCAGGACATTTTTGTATCATA
TATTCTCTTCTTTCCTTACCTAAAAACTTTCTGAGTAGTGGTCCTCAATA
CTTATTAattcaaatcttttatttttaaaaaattcatcGTTACCTTAAAA
ATTGTCATTGTTTCTACATATTCAATGTTCATTTAATAATccggtaggtc
cataaaagtaatGCAATTATCCTTCGTTATACATTGTatctgttttttat
ttcattttttaggaTGTATATCATGCCATAGGAAATGATGAATGTCTTTG
CAAGGTACATTTAGAATGTGTTCGTACTAAAATATCAGAGATTTTGTTAA
GTAACGTGGTGGCCGTAAGTtaatctttgaaatattttagtgCATTGGTA
CCATAATTAGCACATTTTACAAATTTATGAATCGTCGTGATTATACAAAA
ATAGAACAGATCTATTTCGCTCCATTGTCTCAGGGACAAAATTTGAGTGT
TTTTCgggtttttctctctttttttgtgccacaaaacaaaacaaaaaacc
atGCGACACGACGATTTTTTCACACGTTGGTGCAATGGAGCAATGTCTCA
CTGGTGGAGCAATGTCTCATTGCACCAACGCGGAAAAGAAAATCTCGTGT
CGCCGTAGCTTTATcagtaatttctttttaaattgttaTAGGAAGAAGAG
ATGTCGGACATTCCCATTGATTTCGACCGTGACGCACCAGATGATATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010148XLOC_010148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018097-exon-sc0000287-1491911889:333786..334168TCONS_00018097-exon-sc0000287-1491911889:333786..334168Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:333786..334168TCONS_00018097-exon-sc0000287-1510915933:333786..334168Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:333786..334168TCONS_00018097-exon-sc0000287-1575043694:333786..334168Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:335064..335133TCONS_00018097-exon-sc0000287-1491911889:335064..335133Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:335064..335133TCONS_00018097-exon-sc0000287-1510915933:335064..335133Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:335064..335133TCONS_00018097-exon-sc0000287-1575043694:335064..335133Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:335249..335302TCONS_00018097-exon-sc0000287-1491911889:335249..335302Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:335249..335302TCONS_00018097-exon-sc0000287-1510915933:335249..335302Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:335249..335302TCONS_00018097-exon-sc0000287-1575043694:335249..335302Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:335549..336166TCONS_00018097-exon-sc0000287-1491911889:335549..336166Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:335549..336166TCONS_00018097-exon-sc0000287-1510915933:335549..336166Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:335549..336166TCONS_00018097-exon-sc0000287-1575043694:335549..336166Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:336445..336479TCONS_00018097-exon-sc0000287-1491911889:336445..336479Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:336445..336479TCONS_00018097-exon-sc0000287-1510915933:336445..336479Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:336445..336479TCONS_00018097-exon-sc0000287-1575043694:336445..336479Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:336857..336940TCONS_00018097-exon-sc0000287-1491911889:336857..336940Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:336857..336940TCONS_00018097-exon-sc0000287-1510915933:336857..336940Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:336857..336940TCONS_00018097-exon-sc0000287-1575043694:336857..336940Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:337398..337449TCONS_00018097-exon-sc0000287-1491911889:337398..337449Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:337398..337449TCONS_00018097-exon-sc0000287-1510915933:337398..337449Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:337398..337449TCONS_00018097-exon-sc0000287-1575043694:337398..337449Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:337798..337839TCONS_00018097-exon-sc0000287-1491911889:337798..337839Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:337798..337839TCONS_00018097-exon-sc0000287-1510915933:337798..337839Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:337798..337839TCONS_00018097-exon-sc0000287-1575043694:337798..337839Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1491911889:338227..338285TCONS_00018097-exon-sc0000287-1491911889:338227..338285Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1510915933:338227..338285TCONS_00018097-exon-sc0000287-1510915933:338227..338285Clytia hemisphaericaexon
TCONS_00018097-exon-sc0000287-1575043694:338227..338285TCONS_00018097-exon-sc0000287-1575043694:338227..338285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:333786..338285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0183746	0	0	0.119613	0.0113521	0.0333967	0	0	0.0692344	0.296223	0	9.80179e-06	0.320149	0.00696353	0	0.00110252	0	0	0	0	0.0548373	0	0.0243499	0	0.0647804	0.11563	0	1.46153	0.0442554	0.0417515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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