TCONS_00018096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018096
Unique NameTCONS_00018096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018096 ID=TCONS_00018096|Name=TCONS_00018096|organism=Clytia hemisphaerica|type=transcript|length=1447bp
AGCTTTAATATACTTCAATCCCTGGATAGCCACCTTGTATTAGATGTTTG
GCCCCTAAGATGTTATCTATACTTCATCAAAGACGCATTTAACCACCTGA
ATAATTGATATCCTCAACCAAGAGATTCGACTTTTTTCTTGAAAGTCCAA
TTGCATTCTCGTGTTTTCTTTAatacaattttatattttatgtgtTATGT
CATTTTTACTCTAATTTTACTCTAAGTATTGATGCAACAATGTCTTCTTC
ATATGGACGACTGGTTAACGATTCCCCTGAAATTTATGCAAATTGTGTAA
TGAAGCGAGAAAGGATTGGAGATTCATTCGccctttgtttgtttgtaaag
AAAGATATTGATATTGAAATTGGGACTGAGTTAAGGTATGACTATTGTTT
TGGGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTGA
ATGAAGAGCGTTACGGAAAACCCTGCACAATACCTGTTCCAACTACCTTT
GAAAATTTGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGT
AGAATATAGGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAG
CAGAACTGATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTG
AACAATGGAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGA
AGAAACAGAACTTAACGACGGAGTGGCAGAACTTAACGATGGAGAATTAG
AATTCAACAGTGGAAAAGCAGAACTGAACGATGAAGAAGCAGAACTGATC
ACTGTAATAACAGAACTCATTGATGGAGAAACAGAACTTATCGATGGAAA
ATCAGAACTGAACATTGGAGAAGCAGAACTGAACAATGGAGAAGCAGAGC
CGAATAGTGGAAAAGCAGAACTGATTGATGAAGTAACAGAACTCAACGAC
GGAGTTGCAGAACTTAACAATAGAGAATCAGAAGTCAACAGTGGAAAAGC
AGAACTGAACGGTGTAGATGCAGAACTAAACGGTGGAGAAGCAGAACTAA
TCGATGATGAAACCATTACTGAAGTTGAACAagtcaaatttgatgaagaC
ATTATACCACCTACCCCAGATAAAAAGgctttcaagagtTTGGTGAAAAA
CCAATCTGTAAGaaTAATCACTGCGAAAGAAATGAGAGCCCAAATTGCAA
ATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCCCGAATACAAgCTT
AGCAGACCTGTTATCAGTGTTAGAAGATACTTTAGAAATCGAAGGTATCT
TCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTCATATTTAAGgaTG
TATATCATGCCATAGGAAATGATGAATGTCTTTGCAAGGAAGAAGAGATG
TCGGACATTCCCATTGATTTCGACCGTGACGCACCAGATGATATATG
Run BLAST on NCBI

transcript from alignment at sc0000287:333784..338285+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018096 ID=TCONS_00018096|Name=TCONS_00018096|organism=Clytia hemisphaerica|type=transcript|length=4502bp|location=Sequence derived from alignment at sc0000287:333784..338285+ (Clytia hemisphaerica)
AGCTTTAATATACTTCAATCCCTGGATAGCCACCTTGTATTAGATGTTTG
GCCCCTAAGATGTTATCTATACTTCATCAAAGACGCATTTAACCACCTGA
ATAATTGATATCCTCAACCAAGAGATTCGACTTTTTTCTTGAAAGTCCAA
TTGCATTCTCGTGTTTTCTTTAatacaattttatattttatgtgtTATGT
CATTTTTACTCTAATTTTACTCTAAGTATTGATGCAACAATGTCTTCTTC
ATATGGACGACTGGTTAACGATTCCCCTGAAATTTATGCAAATTGTGTAA
TGAAGCGAGAAAGGATTGGAGATTCATTCGccctttgtttgtttgtaaag
AAAGATATTGATATTGAAATTGGGACTGAGTTAAGGTAAAAATCTGGTTC
TTTGTAAGGTTAATCAGGTTTTTTTACAACTTGAACAACATTTTGAAGGG
AGCTCTAGCTGgaatatcagaaaaaataatAGTACAGTACTAACAAAAGT
ACTTAAATTAACTTAACTTAAATTAGTACTTAATAATTACTACTTTTAAC
TTAAATATCTTGTGATCAAGCTATCAAAACCGTATAAAGCAGGCCTTGTT
TCAAGAACCTGGTTACAATTCACGAGAGTGATCTGCTTATTGCTTAATAG
TTTTTTAAGATTATCTTCTGAAAGTTAATTCTCTATTTCTTgactttctt
gaaatttttcttcctGGGTACTGAGTTTTATCTTttgaatttgttaaaat
tttacatCGGAAAAGGAAATAGAAATTTTTGCAACAAATAATCTAGGTCT
CCGCATACCTTCAGTTGAGTTTAGCTTTTGTAACACAATTTAAGTTAGAC
CAAAAAATATTTTNCCAACAAACAACTTGAACAACATTTTGAAGGGAGTT
CTAGCTGGAATACCAGAAAAAATAATAGTACAGTActaataaaattttta
acttaAATATCTTGTGATCAAGCTATCAAAACCGTATAAAGCAGGCCTTG
TTTCAAGAACCTGGTTACAATTCACGAGAGTGATCTGCTTATTGCTTAAT
AGTTTTTTAAGATTATCTTCTGAAAGTTAATTCTCTATTTCTtgactttc
tttaaatttttcttcctgGGTACTGAGTTTTATCTTttgaatttgttaaa
attttacatCGGAAAAGGAAATAGAAATTTTTGCAACAAATAATCTAGGT
CTCCGCATACCTTCAGTTGAGTTTAGCTTTTGTAACACAATTTAAGTTag
accaaaaaatatttttgacttttgttgtaGGTATGACTATTGTTTTGGGT
TACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTGAATGAA
GTAAGTTTACTCTATATTATTCAGGCAGATCTTTAATGTTCATTTATACT
GTCAAAATTTTCACATCAAATTAAATCTGTGAATAACATGTTTCACGGTC
GTTTTTTTTATTCAGGAGCGTTACGGAAAACCCTGCACAATACCTGTTCC
AACTACCTTTGAAAATTTGGTAAGACTTTTATATGTGACGATTCATAGCA
AAAAGAgtacaaaattttgttttcatgtgCTAGGCCTTGAGCGCAATTTA
CTGATTTGgattaaatgtttttgaattttatttacaTTGATGCTCCCCCT
TACAAAGAggtaaaaatgttgataaataTTTTATATGAGGCGAGTTGAAG
TTATTATTTTGGAAGGTCTGATTGTTCAAAATTCTATGAAAGTATCGTAA
CTTTTCGCTCTACAGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTT
TGAAGTAGAATATAGGATTGGAGGCGATGGAACAGTAGAATTGGACGATG
GAGAAGCAGAACTGATTGATGGAAAAACAGAACTGAACAATGGAGAAGCA
GAACTGAACAATGGAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGAT
TGATGAAGAAACAGAACTTAACGACGGAGTGGCAGAACTTAACGATGGAG
AATTAGAATTCAACAGTGGAAAAGCAGAACTGAACGATGAAGAAGCAGAA
CTGATCACTGTAATAACAGAACTCATTGATGGAGAAACAGAACTTATCGA
TGGAAAATCAGAACTGAACATTGGAGAAGCAGAACTGAACAATGGAGAAG
CAGAGCCGAATAGTGGAAAAGCAGAACTGATTGATGAAGTAACAGAACTC
AACGACGGAGTTGCAGAACTTAACAATAGAGAATCAGAAGTCAACAGTGG
AAAAGCAGAACTGAACGGTGTAGATGCAGAACTAAACGGTGGAGAAGCAG
AACTAATCGATGATGAAACCATTACTGAAGTTGAACAagtcaaatttgat
gaagaCATTATACCACCTACCCCAGATAAAAAGGTACAATTTAATTAAGT
GAAAATGTGTGTGAAAACTTTAATTTGGCTACTCATTCATGGTAAAGTTC
TAAgtgtttactttttcttttttctgagGGCTTAAACCATAGTTCCATGC
TTGAACTAAACAACCCTAGAACCAGTCTTTTGTAAGAACTCTTTCATAAG
AAGTAAGAATTATACATGTTTAATTTTTACGCCTTCTGGCAGAGGACCTT
TTTAAAAGCGCATAAATTCATTTAAAGTCAGTAAAAATCTCTATTTTACG
ATAtattttaggctttcaagagtTTGGTGAAAAACCAATCTGTAAGGTAT
AATGTTAATTATGTTAATtatgtaatattttttaaactgaACTTAATAAA
TGGCATAAGCTATGCACTTGGTTCGAAtcatgtcatttatttttttatgg
cACACCCGTTATATATTTTTAAGCAATTCAAAGAATTACTGTCcagggtg
gcagagcagcatatgcatttcgtccggGTTGACTCATCAGCATGGCCTAC
TGCACCCTGGCTAGCCAGATCGAATCGGTAATCAGCAGATGTAGTGGACG
GCGTCCTTGACAACCATGCTATTTTTGAAAGACAAAATATTACTGCCCAC
TGAGTTGATGATTGTGTAAGTGAATAGTTCTAACACAATATCTAATCCTT
TGCTtcacattttcttattttagaaTAATCACTGCGAAAGAAATGAGAGC
CCAAATTGCAAATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCCCG
AATACAAGTAAATTTTTATGTTATTAGCTAATGATTTGAGTCTATTCACA
TCGATTACGATTTTGATGCTTTCCCTGGCGACGGATCAAAACAGATACTT
TTGATTTTACCttctttgaaaaacattttcaataccTATTCCATGATGCA
AAATTGtactattatttttattaggCTTAGCAGACCTGTTATCAGTGTTA
GAAGATACTTTAGAAATCGAAGGTATTTGGTAATTGGTTTTAGTaaacaa
aatttaaagaaactgaacgttgtgtttttctaaccacttactattttttt
ttcttgaatctACTTATTTTTTTAATCCTGTGAAATTGCACGACCAACTC
GGAttgataattcatttttaataaACAACAGTATGATAACCCAGTTTTTT
TAGCCTTACCCAGAAGCACCTTATACAAGTataattaatttgttgtttgt
CTACTTTTCTTCAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAAGCA
ACCTGTCATATTTAAGGTATTGGTCATTTTGTGGTGATGCTTAACGtttg
atttctaaaaaaatgtccTTTGAATCTGGAACTCTTGTAGAGAACTAGAA
GTATATGTTAGAAATCAACGTTTTTCTGATTTCAGGACATTTTTGTATCA
TATATTCTCTTCTTTCCTTACCTAAAAACTTTCTGAGTAGTGGTCCTCAA
TACTTATTAattcaaatcttttatttttaaaaaattcatcGTTACCTTAA
AAATTGTCATTGTTTCTACATATTCAATGTTCATTTAATAATccggtagg
tccataaaagtaatGCAATTATCCTTCGTTATACATTGTatctgtttttt
atttcattttttaggaTGTATATCATGCCATAGGAAATGATGAATGTCTT
TGCAAGGTACATTTAGAATGTGTTCGTACTAAAATATCAGAGATTTTGTT
AAGTAACGTGGTGGCCGTAAGTtaatctttgaaatattttagtgCATTGG
TACCATAATTAGCACATTTTACAAATTTATGAATCGTCGTGATTATACAA
AAATAGAACAGATCTATTTCGCTCCATTGTCTCAGGGACAAAATTTGAGT
GTTTTTCgggtttttctctctttttttgtgccacaaaacaaaacaaaaaa
ccatGCGACACGACGATTTTTTCACACGTTGGTGCAATGGAGCAATGTCT
CACTGGTGGAGCAATGTCTCATTGCACCAACGCGGAAAAGAAAATCTCGT
GTCGCCGTAGCTTTATcagtaatttctttttaaattgttaTAGGAAGAAG
AGATGTCGGACATTCCCATTGATTTCGACCGTGACGCACCAGATGATATA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010148XLOC_010148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018096-exon-sc0000287-1491911889:333784..334168TCONS_00018096-exon-sc0000287-1491911889:333784..334168Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:333784..334168TCONS_00018096-exon-sc0000287-1510915933:333784..334168Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:333784..334168TCONS_00018096-exon-sc0000287-1575043694:333784..334168Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:335064..335133TCONS_00018096-exon-sc0000287-1491911889:335064..335133Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:335064..335133TCONS_00018096-exon-sc0000287-1510915933:335064..335133Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:335064..335133TCONS_00018096-exon-sc0000287-1575043694:335064..335133Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:335249..335302TCONS_00018096-exon-sc0000287-1491911889:335249..335302Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:335249..335302TCONS_00018096-exon-sc0000287-1510915933:335249..335302Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:335249..335302TCONS_00018096-exon-sc0000287-1575043694:335249..335302Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:335549..336166TCONS_00018096-exon-sc0000287-1491911889:335549..336166Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:335549..336166TCONS_00018096-exon-sc0000287-1510915933:335549..336166Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:335549..336166TCONS_00018096-exon-sc0000287-1575043694:335549..336166Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:336445..336479TCONS_00018096-exon-sc0000287-1491911889:336445..336479Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:336445..336479TCONS_00018096-exon-sc0000287-1510915933:336445..336479Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:336445..336479TCONS_00018096-exon-sc0000287-1575043694:336445..336479Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:336857..336940TCONS_00018096-exon-sc0000287-1491911889:336857..336940Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:336857..336940TCONS_00018096-exon-sc0000287-1510915933:336857..336940Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:336857..336940TCONS_00018096-exon-sc0000287-1575043694:336857..336940Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:337108..337155TCONS_00018096-exon-sc0000287-1491911889:337108..337155Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:337108..337155TCONS_00018096-exon-sc0000287-1510915933:337108..337155Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:337108..337155TCONS_00018096-exon-sc0000287-1575043694:337108..337155Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:337398..337449TCONS_00018096-exon-sc0000287-1491911889:337398..337449Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:337398..337449TCONS_00018096-exon-sc0000287-1510915933:337398..337449Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:337398..337449TCONS_00018096-exon-sc0000287-1575043694:337398..337449Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:337798..337839TCONS_00018096-exon-sc0000287-1491911889:337798..337839Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:337798..337839TCONS_00018096-exon-sc0000287-1510915933:337798..337839Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:337798..337839TCONS_00018096-exon-sc0000287-1575043694:337798..337839Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1491911889:338227..338285TCONS_00018096-exon-sc0000287-1491911889:338227..338285Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1510915933:338227..338285TCONS_00018096-exon-sc0000287-1510915933:338227..338285Clytia hemisphaericaexon
TCONS_00018096-exon-sc0000287-1575043694:338227..338285TCONS_00018096-exon-sc0000287-1575043694:338227..338285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:333784..338285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34942	1.28796	0.423653	0	2.39466	2.95747	4.15925	2.93559	3.00349	3.95031	0.540052	0.0260243	0.262957	0.688926	1.58397	1.05853	5.85986	4.76089	1.83327	2.15301	4.41383	5.3639	1.53177	2.00983	0	0	6.64931	0.266741	5.11524	2.58278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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