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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018092 ID=TCONS_00018092|Name=TCONS_00018092|organism=Clytia hemisphaerica|type=transcript|length=1674bp
aaatggaTGAGCCATTTTCCTTGACCTCGCAAAGGCCTTTGATACAGTAA
ACCATGATATTCTCTGGGTGTGAGAGGTACCATTAATAAATGGTTTCAAA
GTTACTCAGAAAATAGACAGCAATCTGTTGTCATTGATCAATCAGTTTCT
CTACCAATCAGAATGTCAAATGGTGTTCCCCAAGGGTCAGTACTGGGCCC
TCTTCTATTTTTGGCCCAGCAGCGCAGCGTAGTGGGCCTTTCATCTGCAC
AGTGCCCGTACGTTTGTTACGCAAAGCAATTAGGCGGTGTTCCGCGAGAG
TACATATATTTTCCAGGCTAAACTCAGCGCTATAATGTAGAGGGATCGAC
AAGGATCGTCNCCGTACGTTTGTTAGTTAGTTACGCAAAGCAATTAGGCG
GTGTTCCGCGAGAGTACATATATTTTCCAGGCTAAACTTAGCGCTATAAT
GTAGAGGGATTGACAGGGATCGTCATAGCGCTATAATGTAGAGGGATCGA
CAGGGATCGTCATAGTCAATTTTGTCTGTCGGCTAGCATACAATTATCTA
TCCTCTAGCAAAGCCGAACAAAGCCATATGTTGATATATGGCTGAAGACT
GTATCTTGTTATTGTCTGTATTTCTTATAGTCTACCACCTACATAGACTA
TCTTCAACTCAGCGTGGAGTGTTCAGCGTTAtctctttttctctcaaagA
CTGAGAAGTAAAGAGTTCAAGAAGTAAAGAAGATGAATCAAGATTTTACT
GTCACTGACTGCTGCTGCCATTCATAAAGTTTTGGACCATCTATCATCCA
TATACATCAAGACTGTTATCGTACATCATATCCAGACTGATTGGTTCCCA
CTGATTGATTGATACCCAATCTTAAGggttCATCAAGTCCACATCATTCA
GTGTATAGCTACTCTGGTCAATCTGGATTTACATTAGATAGCTTGGTTAT
TAAAAGCTAACTTGGATTTACACAGTTAACTCATATTTAAAGGATTCCCC
TCTATTCACTTGGCTCACCAGAATACACTTGGAATACTTTGTTTTACTCA
GTTTATTTGGTTTTACACAGCTCaattgatattactcggctcacttgata
ttactcggctcacttgatattactcggctcacttgatattactcggccta
cttgatattactcggctcacttgatattactcgtcTCACTTGATactact
cggctcacttgatactactcagctaacttgatattactcggctaacttga
tattactcggctaacttgatattactcggctaacttgatattactcagct
aacttgacactactcagctaacttgatattactcggctaacttgacagta
ctcggctcacttgattcTACATAGCTCACTTGATTCAATTAACTTGTGTT
TCATTGGCTAACCcggaatttatgattttttttgacatttcattgTTTAC
CACTTACTTGCTCAGCTTTTTTAACTTGTTAAAAAACAATAGgctattaa
aataaatatacatTATATTTGAAACTGAcgtatttataatttttttacat
tcccCTTTTCAAAACATGATATCAATCGAAGCATACCGTAGTTCAATCGG
CAACTTTAACGGGACAAGGCAATATGATCTCCGTAGTCAACTCTTCTATT
TCAAGCAACGGGGTTTCACGATTA Run BLAST on NCBI transcript from alignment at sc0000287:276794..280069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018092 ID=TCONS_00018092|Name=TCONS_00018092|organism=Clytia hemisphaerica|type=transcript|length=3276bp|location=Sequence derived from alignment at sc0000287:276794..280069+ (Clytia hemisphaerica)
aaatggaTGAGCCATTTTCCTTGACCTCGCAAAGGCCTTTGATACAGTAA
ACCATGATATTCTCTGGGTGTGAGAGGTACCATTAATAAATGGTTTCAAA
GTTACTCAGAAAATAGACAGCAATCTGTTGTCATTGATCAATCAGTTTCT
CTACCAATCAGAATGTCAAATGGTGTTCCCCAAGGGTCAGTACTGGGCCC
TCTTCTATTTTTGGCCCAGCAGCGCAGCGTAGTGGGCCTTTCATCTGCAC
AGTGCCCGTACGTTTGTTACGCAAAGCAATTAGGCGGTGTTCCGCGAGAG
TACATATATTTTCCAGGCTAAACTCAGCGCTATAATGTAGAGGGATCGAC
AAGGATCGTCNCCGTACGTTTGTTAGTTAGTTACGCAAAGCAATTAGGCG
GTGTTCCGCGAGAGTACATATATTTTCCAGGCTAAACTTAGCGCTATAAT
GTAGAGGGATTGACAGGGATCGTCATAGCGCTATAATGTAGAGGGATCGA
CAGGGATCGTCATAGTCAATTTTGTCTGTCGGCTAGCATACAATTATCTA
TCCTCTAGCAAAGCCGAACAAAGCCATATGTTGATATATGGCTGAAGACT
GTATCTTGTTATTGTCTGTATTTCTTATAGTCTACCACCTACATAGACTA
TCTTCAACTCAGCGTGGAGTGTTCAGCGTTAtctctttttctctcaaagA
CTGAGAAGTAAAGAGTTCAAGAAGTAAAGAAGATGAATCAAGATTTTACT
GTCACTGACTGCTGCTGCCATTCATAAAGGTAAATCTCTATTGTGTGCTC
CAGTAGTATCATAAGAATATTGGCCTTTTGCAACAAGACACTCTGCGAAA
TACAAAAAATCTGCAAGGTTAATTCTCAAATTAAGGGCTAGGTAGGAGGG
GGAAAGAACCAGGCAATTCCACTTATACAAAAAGTGCAGCGTCGGTCACT
ATTGGGTCGTTTGGCGTctgcttttattttgaaaacagctATTCTATCGA
TTACGTCGGTCGGTCGATACTCGAAACCAATGATCTCAGTCGAACGGAAC
CAATGATCGAACCAGATCGAACTCAATCAAACGATTAAAATTGATTGGCC
TTTTGCAACAAGACACTCTGCGAAATACAAAAACTCTGCAAGGTTAATTC
TCAAATTGAGGGCTAGGTAGGAGGGGTAAGAATCAGGCAATTCCACTTAC
AAAAAGTGCAGCGCAGATCGTTTGGCGTCTGCTTTACGAAAATCTCAGTC
GAACGAATCAAATATTACCTAGAATTCGGCCGTTGGATTGAGATTTgttt
gcgttcgacaatcgaatttcaattccgttcgattgagatcgtctggtcaa
aattgagaaaaaaattttacttggGGCagcaaaaacttgaaattcactAA
TTTAAGTTCGAACCAAAATTGATTCTTGTCgtcaatcattaaaaaaaggt
aatAGAAAGGGAAGATTTGCCtggccattcgccaaaataagttcttgtca
aaatttaaaatatattcaTTCACATTTTTGCTGACTTCAGTtgtttgcca
aaataagttcttttTGTATAGTTTTGGACCATCTATCATCCATATACATC
AAGACTGTTATCGTACATCATATCCAGACTGATTGGTTCCCACTGATTGA
TTGATACCCAATCTTAAGGTGAgtttgaatttcattttcttcaggATTTA
TCATTAAAAGGCTTGGTAACCTAATGACTTAAGTGAAAAATCAAGTTGTG
TATTACCATTTACTGCGAAATCTTTGTGAGGCTGGGAGAAACGTGGTAAA
GAGAAGGCCATTGTTGGTTATAGTCTAGAGAaggatttctttttttgatt
cgtaattttttgtcctttttgaaacttttaaagggataacgagataaaat
atgaaaattggctaaaagATTCTTTCCATGGTCCTTAGTAAGCcctccaa
atattttttgagaaataacaTTCCAGAGTCAAGATATGACAATTAGAAAT
CTCCGTTTTTCCTACCTCACACGTACctcacgttgaaattctattgtttt
ccagcagaaattaaaaattacaaacctAAATATTTCGACTTTGAAAAACA
AGTAGCCTGTAAAATTTGAAGGTTTTGCTAAGGACTATGGAAGGAATCTT
TGggctgaattttattttttatctggttatccctttaagtTAGCTGCCCT
GGAAATGAGATTTTCACTTGTATTTGTAAAACATCATGATCAGATTTCAT
CTCGGGTTCTTTATGTTGTGCGAAAAAATTGTGACCTATAAATACTTGCA
TGcctcaattttcaacaaaaagcaaGTGTCTTCCTAACGGGTGGACATAA
TTAGGAAAGTCTTCCAGAACTTGGAACAAGCTTACGCTGCACTTGAGCTT
TACGATTTATGAACATGGTAGTATACTCCAGTTGAACGCGATTGTTTGGg
taatttcgtttttgtttttatttttcagggttCATCAAGTCCACATCATT
CAGTGTATAGCTACTCTGGTCAATCTGGATTTACATTAGATAGCTTGGTT
ATTAAAAGCTAACTTGGATTTACACAGTTAACTCATATTTAAAGGATTCC
CCTCTATTCACTTGGCTCACCAGAATACACTTGGAATACTTTGTTTTACT
CAGTTTATTTGGTTTTACACAGCTCaattgatattactcggctcacttga
tattactcggctcacttgatattactcggctcacttgatattactcggcc
tacttgatattactcggctcacttgatattactcgtcTCACTTGATacta
ctcggctcacttgatactactcagctaacttgatattactcggctaactt
gatattactcggctaacttgatattactcggctaacttgatattactcag
ctaacttgacactactcagctaacttgatattactcggctaacttgacag
tactcggctcacttgattcTACATAGCTCACTTGATTCAATTAACTTGTG
TTTCATTGGCTAACCcggaatttatgattttttttgacatttcattgTTT
ACCACTTACTTGCTCAGCTTTTTTAACTTGTTAAAAAACAATAGgctatt
aaaataaatatacatTATATTTGAAACTGAcgtatttataatttttttac
attcccCTTTTCAAAACATGATATCAATCGAAGCATACCGTAGTTCAATC
GGCAACTTTAACGGGACAAGGCAATATGATCTCCGTAGTCAACTCTTCTA
TTTCAAGCAACGGGGTTTCACGATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018092-exon-sc0000287-1491911889:276794..277572 | TCONS_00018092-exon-sc0000287-1491911889:276794..277572 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1510915933:276794..277572 | TCONS_00018092-exon-sc0000287-1510915933:276794..277572 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1575043694:276794..277572 | TCONS_00018092-exon-sc0000287-1575043694:276794..277572 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1491911889:278365..278461 | TCONS_00018092-exon-sc0000287-1491911889:278365..278461 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1510915933:278365..278461 | TCONS_00018092-exon-sc0000287-1510915933:278365..278461 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1575043694:278365..278461 | TCONS_00018092-exon-sc0000287-1575043694:278365..278461 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1491911889:279272..280069 | TCONS_00018092-exon-sc0000287-1491911889:279272..280069 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1510915933:279272..280069 | TCONS_00018092-exon-sc0000287-1510915933:279272..280069 | Clytia hemisphaerica | exon |
| TCONS_00018092-exon-sc0000287-1575043694:279272..280069 | TCONS_00018092-exon-sc0000287-1575043694:279272..280069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:276794..280069 + |
Blast
The following BLAST results are available for this feature:
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