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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018085 ID=TCONS_00018085|Name=TCONS_00018085|organism=Clytia hemisphaerica|type=transcript|length=1222bp
TGGCGCTTCTATGATCATTGCATATGTACATCACTACAAATTCGATTATC
CGAGTGTTACTGTCGAGTTTGAAGTTCAATGTGAAAATGGCTCATCTTTT
ACTGAACGTGGAAGagcaaaatcattaaaaattgaGCGGTTCAGTAAAAC
ATTGTtaatacaaaaagaaagaggtTTTGGATCAATCAATCAATGTAACA
TTGAGAGCCACCAGTGCCTTCAGAATGTCCAAAGAAAAATGCAGTCTAAG
CCAACAGAAGTAAATACAGCATTTGATCAATGTTTTAAAAAGACTAATCA
TGGtgacgatgatgatgacgatgatgtTAACTTTTATTGCCAAGCACGGA
GGATGAAGATCTTACAAAAGGCTTTACCTTACGTAGAATCAGTAAAAATC
GTCGGAATAGCTTCCTCACAAGGCTGCTCCAGAGATGCTATATTCCAAAC
AACGCTTGAACAAACGAACACTGTCACTGAAACCTCTGCATTTGtaacaa
agaaaaattcaaagttcAATTATGGTTCTTCATTGGTAGTAGAGCTTCCA
AACTCGTCAAATCGTTTTGGTGATTCAACAGAGATTCTATCAGTTGAATT
AGAGAACAATACACCGAATGTTTGGAATTGGGCAACCGCTAAAATTAAAG
AAACTTCAATTTCATCTGCTCAATCATTGAAATATAAAGGTCCTGGGGCA
GCACTGGTCATGGGGTACGTTCAGTACTATAAATTTGACAATCCAAATGT
TGATGTTGAATACTATGTGGAGTGCAATGATGGTTCGAAATTCACAGAGC
GTGGTACAGTCAAACTAGAAGCTGAGAGATTCAGCCAAACACATTTCGTT
CAAAAACATGGTGTATTTGATTACCCAGAAGATTGTAACGAAGAGAGTTA
TGAGTGTATTCGAGCAATCAATGGAAATAAAGTACTGGAGCCAGCCGAAA
TTACAAAACAGTTCGAAAACTGTTTCAATCTTAATCCAAGAGACGGCCCG
TCCTATCGTTATTCGTATGCAGCCGGAGTTCACCATCAAAAAAAAGCTTT
GATCATAATGGTTTTACTCATCATTGCAGTAATGGCGTTAATCCATTAAA
AAACTATCTTTTCAACAGCACACTCAAGCTTCGAATACACCGAAGGTGAA
AAAGATTCGGAAAGTTTcactttgaaattaaaattttttattacttGAAC
CACGCACAATTTAAAAGTTTAG Run BLAST on NCBI protein sequence of TCONS_00018085-protein >TCONS_00018085-protein ID=TCONS_00018085-protein|Name=TCONS_00018085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
GASMIIAYVHHYKFDYPSVTVEFEVQCENGSSFTERGRAKSLKIERFSKT
LLIQKERGFGSINQCNIESHQCLQNVQRKMQSKPTEVNTAFDQCFKKTNH
GDDDDDDDVNFYCQARRMKILQKALPYVESVKIVGIASSQGCSRDAIFQT
TLEQTNTVTETSAFVTKKNSKFNYGSSLVVELPNSSNRFGDSTEILSVEL
ENNTPNVWNWATAKIKETSISSAQSLKYKGPGAALVMGYVQYYKFDNPNV
DVEYYVECNDGSKFTERGTVKLEAERFSQTHFVQKHGVFDYPEDCNEESY
ECIRAINGNKVLEPAEITKQFENCFNLNPRDGPSYRYSYAAGVHHQKKAL
IIMVLLIIAVMALIH Run BLAST on NCBI transcript from alignment at sc0000287:70324..75483+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018085 ID=TCONS_00018085|Name=TCONS_00018085|organism=Clytia hemisphaerica|type=transcript|length=5160bp|location=Sequence derived from alignment at sc0000287:70324..75483+ (Clytia hemisphaerica)
TGGCGCTTCTATGATCATTGCATATGTACATCACTACAAATTCGATTATC
CGAGTGTTACTGTCGAGTTTGAAGTTCAATGTGAAAATGGCTCATCTTTT
ACTGAACGTGGAAGagcaaaatcattaaaaattgaGCGGTTCAGTAAAAC
ATTGTtaatacaaaaagaaagaggtTTTGGATCAATCAATCAATGTAACA
TTGAGAGCCACCAGTGCCTTCAGAATGTCCAAAGAAAAATGCAGTCTAAG
CCAACAGAAGTAAATACAGCATTTGATCAATGTTTTAAAAAGACTAATCA
TGGtgacgatgatgatgacgatgatgtTAACTTTTATTGCCAAGCACGGA
GGATGAAGATCTTACAAAAGGCTTTACCTTACGTAGAATCAGTAAAAATC
GTCGGAATAGCTTCCTCACAAGGCTGCTCCAGAGATGCTATATTCCAAAC
AACGCTTGAACAAACGAACACTGTCACTGAAACCTCTGCATTTGtaacaa
agaaaaattcaaagttcAATTATGGTTCTTCATTGGTAGTAGAGCTTCCA
AACTCGTCAAATCGTTTTGGTGATTCAACAGAGATTCTATCAGTTGAATT
AGAGAACAATACACCGAATGTTTGGAATTGGGCAACCGCTAAAATTAAAG
AAACTTCAATTTCATCTGCTCAATCATTGAAATATAAAGGTATTAATTGT
TACTGAATATTAAGTGGGGAAATTACATTTCCACTCTCTGTTCAAATTCA
TTCGATTTTGAGTAGCTAAGTTCCCTCGGTCATGTTTTTTCTTGTCTGGA
AAATGGCGGCGAATTTCACTTTACAGAAAGAACATAAAGGAGGAACTTTT
TATACTTAAGTGTTATTAGCTATGAGTAAATAGAATAGAATCTcattttg
atgataaaaaaTCGATAGAAGGACAGTGACAGTGACCTCCACAGTTAAGC
TTTCTTTTAACATGTGAGAACAGagtttgcaatgtttatcaaagtttctc
tctgtgtcatattaattgtcatgagacatcttttatgaataacttttaca
aaaaacaattctcaatgactttaacgtcatgaaaattgtaaagaaagtta
attctttttaatcattaTGACTGTTgtaattgtaaaaataattattgtgt
tggtatatGTTTTCTTACggtttgttaaacacacgcaacaaccttctact
cagaatcatgttggaactcgatactttttttcgggacaccctgtacttaT
AACGCTactttaatttattttgagcTGGCTCTCCTTTTATTGAATCTTTT
GTGACGTTTCTTACTCTTGTTTTCCTTGAAGGTGTGCTGAATAGAATAAA
TTCATATGATGTGATACTCAAGGTAGTATATATGATAAGCAGTAAATTTA
GTCAGTTTAAGAAAGACTTGATTTTTAATGTATAAAAGGGTTCATATTGG
TTGGTATTCATTTGAAACCGTTATGGGGACGTACCGCTGGTGAAAGTCCC
TTTCTTAGGCTGCAAAATCTGATATGGTCTTAAAATCACTTGAGAGATAC
ATATATATATAGGCTGATTTCAATGTTAATAACCATTCAGGGTggatttt
aggaaaaagtcAGGTCTGATTCCGTTACTCAAGAACCCGAAAAACGTCAC
CTTCCGGTAATTTTTCGGACCCACCCAGTATTTTTAGGAACCagtttatt
tacttttgaaaatattctccGCTCTCAAAGCTGAATCGGTCCAAAGAGCC
TGGTTTTAGTATACAATTAtcttatttttgtgtttttagagGCACAATTT
CTGACCCCCTCCCTGGCAATTAGGTTTGTTTCCGcttattatattttgaa
aaaattgtggACCCCTATTATTTGGACCccctattcgggaccttagagtg
tGTGAAATTTGTCGATCAGGATCCAGGGTCCAAATTTCGTATGTCACCAC
CTAACCTTAATCTCAAATCATATGGTTCTATTACTGCtgattgtgatttt
ttaaaacatcaaagGGACGATATCAAGGTTAGTCTTCCCACTTTGTGTCT
ATGTCATTTTCTAGCTGGTTCACAAAGACTTTACAAAGTATTGTTTGATA
TTTATTTAATCTTTAGTATATTGAATTGGAATTATGACAGTATGTAACCT
TAAGACATCGTCAATACAACTCCAAATAATGCAGATGAGATGGACTTTTT
ATAAGATattttaataattggtcattttctAGCTCGTTTACAAAGACTTG
ACAATAACCTGCACAAAGCAGGTCTAAATATTAATTAATGTTTGATATAT
TGAATTGAAAGTTTGACAGTTTGTAACTTATAACACCGGTCAACACAACA
TCTATCTAACGTGCATAAACGTCCAAATAATGTTGTTTGTAGACCGTGAT
TTTAAGtgttaacctttccagcgcgcaactttttaaattttcacgctgtc
agcgcgcaacattttttcagaaaatagacatgttcaggtatttggtcata
actcaagaactaggaatctttagaaaaaaagtaaggtatccctgaaaagc
tacttaaattctacaacttttagaccaagtaccaatccaaataaaatatt
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCACGTCCgccgggctgaaaaggttaaGCATTTATGTGCTAACGGG
TTTTTCTAAACTCTATTCGTACTGGAGAGGGGGCGTTTCTTTTCGGTGGG
GAAACCAATGCTATTGCCTCCTAAAATAATAATCGTTGGacagaaaagtt
tttgttttttcccaaCTTTTATTTCGTTTCGAAGTAAAAGAAATCTTGAA
CATGATaccatttctgacagtaaggtgtcataaaaatgacaaaaatgtca
aatatatcgctCAAACCGTCAAACCccaaattttttctaaagtcTCTTTG
GGAGAACAAAGGGAATTTTCGAGCTTTGCTCACTTTAGGCATGATGCAGG
ATAGttcatcaaaaagatttttcgtcTAAAGTTACCTTACTGTATGTGAC
CAAGATCATATGTGCCAAATAACATTCAAACAGACAAAacagatcaaaag
ttaaaaagctGGTACAGAAAATCCCCCATAGTTTTGAACCTTCCCTAAAA
GCCTATTATTAATAGGGTTAAGTGGGCTTTTCCTAGAGATAAAACCTAAG
CAATAAATATTTCTGTCTATTTTAAAGGTCCTGGGGCAGCACTGGTCATG
GGGTACGTTCAGTACTATAAATTTGACAATCCAAATGTTGATGTTGAATA
CTATGTGGAGTGCAATGATGGTTCGAAATTCACAGAGCGTGGTACAGTCA
AACTAGAAGCTGAGAGATTCAGCCAAACACATTTCGTTCAAAAACATGGT
GTATTTGATTACCCAGAAGATTGTAACGAAGAGAGTTATGAGTGTATTCG
AGCAATCAATGGAAATAAAGTACTGGAGCCAGCCGAAATTACAAAACAGT
TCGAAAACTGTTTCAATCTTAATCCAAGAGACGGCCCGTCCTATCGTTAT
TCGTATGCAGCCGGAGTTCACCATCAAAAAAAAGCTTTGATCATAATGGT
TTTACTCATCATTGCAGTAATGGCGTTAATCCATTAAAAAACTATCTTTT
CAACAGCACACTCAAGCTTCGAATACACCGAAGGTGAAAAAGATTCGGAA
AGTTTcactttgaaattaaaattttttattacttGAACCACGCACAATTT
AAAAGTTTAG Coding sequence (CDS) from alignment at sc0000287:70324..75483+ >TCONS_00018085 ID=TCONS_00018085|Name=TCONS_00018085|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000287:70324..75483+ (Clytia hemisphaerica)
GGCGCTTCTATGATCATTGCATATGTACATCACTACAAATTCGATTATCC
GAGTGTTACTGTCGAGTTTGAAGTTCAATGTGAAAATGGCTCATCTTTTA
CTGAACGTGGAAGagcaaaatcattaaaaattgaGCGGTTCAGTAAAACA
TTGTtaatacaaaaagaaagaggtTTTGGATCAATCAATCAATGTAACAT
TGAGAGCCACCAGTGCCTTCAGAATGTCCAAAGAAAAATGCAGTCTAAGC
CAACAGAAGTAAATACAGCATTTGATCAATGTTTTAAAAAGACTAATCAT
GGtgacgatgatgatgacgatgatgtTAACTTTTATTGCCAAGCACGGAG
GATGAAGATCTTACAAAAGGCTTTACCTTACGTAGAATCAGTAAAAATCG
TCGGAATAGCTTCCTCACAAGGCTGCTCCAGAGATGCTATATTCCAAACA
ACGCTTGAACAAACGAACACTGTCACTGAAACCTCTGCATTTGtaacaaa
gaaaaattcaaagttcAATTATGGTTCTTCATTGGTAGTAGAGCTTCCAA
ACTCGTCAAATCGTTTTGGTGATTCAACAGAGATTCTATCAGTTGAATTA
GAGAACAATACACCGAATGTTTGGAATTGGGCAACCGCTAAAATTAAAGA
AACTTCAATTTCATCTGCTCAATCATTGAAATATAAAGGTCCTGGGGCAG
CACTGGTCATGGGGTACGTTCAGTACTATAAATTTGACAATCCAAATGTT
GATGTTGAATACTATGTGGAGTGCAATGATGGTTCGAAATTCACAGAGCG
TGGTACAGTCAAACTAGAAGCTGAGAGATTCAGCCAAACACATTTCGTTC
AAAAACATGGTGTATTTGATTACCCAGAAGATTGTAACGAAGAGAGTTAT
GAGTGTATTCGAGCAATCAATGGAAATAAAGTACTGGAGCCAGCCGAAAT
TACAAAACAGTTCGAAAACTGTTTCAATCTTAATCCAAGAGACGGCCCGT
CCTATCGTTATTCGTATGCAGCCGGAGTTCACCATCAAAAAAAAGCTTTG
ATCATAATGGTTTTACTCATCATTGCAGTAATGGCGTTAATCCATTAAGG
CGCTTCTATGATCATTGCATATGTACATCACTACAAATTCGATTATCCGA
GTGTTACTGTCGAGTTTGAAGTTCAATGTGAAAATGGCTCATCTTTTACT
GAACGTGGAAGagcaaaatcattaaaaattgaGCGGTTCAGTAAAACATT
GTtaatacaaaaagaaagaggtTTTGGATCAATCAATCAATGTAACATTG
AGAGCCACCAGTGCCTTCAGAATGTCCAAAGAAAAATGCAGTCTAAGCCA
ACAGAAGTAAATACAGCATTTGATCAATGTTTTAAAAAGACTAATCATGG
tgacgatgatgatgacgatgatgtTAACTTTTATTGCCAAGCACGGAGGA
TGAAGATCTTACAAAAGGCTTTACCTTACGTAGAATCAGTAAAAATCGTC
GGAATAGCTTCCTCACAAGGCTGCTCCAGAGATGCTATATTCCAAACAAC
GCTTGAACAAACGAACACTGTCACTGAAACCTCTGCATTTGtaacaaaga
aaaattcaaagttcAATTATGGTTCTTCATTGGTAGTAGAGCTTCCAAAC
TCGTCAAATCGTTTTGGTGATTCAACAGAGATTCTATCAGTTGAATTAGA
GAACAATACACCGAATGTTTGGAATTGGGCAACCGCTAAAATTAAAGAAA
CTTCAATTTCATCTGCTCAATCATTGAAATATAAAGGTCCTGGGGCAGCA
CTGGTCATGGGGTACGTTCAGTACTATAAATTTGACAATCCAAATGTTGA
TGTTGAATACTATGTGGAGTGCAATGATGGTTCGAAATTCACAGAGCGTG
GTACAGTCAAACTAGAAGCTGAGAGATTCAGCCAAACACATTTCGTTCAA
AAACATGGTGTATTTGATTACCCAGAAGATTGTAACGAAGAGAGTTATGA
GTGTATTCGAGCAATCAATGGAAATAAAGTACTGGAGCCAGCCGAAATTA
CAAAACAGTTCGAAAACTGTTTCAATCTTAATCCAAGAGACGGCCCGTCC
TATCGTTATTCGTATGCAGCCGGAGTTCACCATCAAAAAAAAGCTTTGAT
CATAATGGTTTTACTCATCATTGCAGTAATGGCGTTAATCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018085-exon-sc0000287-1491911889:70324..71012 | TCONS_00018085-exon-sc0000287-1491911889:70324..71012 | Clytia hemisphaerica | exon |
| TCONS_00018085-exon-sc0000287-1510915933:70324..71012 | TCONS_00018085-exon-sc0000287-1510915933:70324..71012 | Clytia hemisphaerica | exon |
| TCONS_00018085-exon-sc0000287-1575043694:70324..71012 | TCONS_00018085-exon-sc0000287-1575043694:70324..71012 | Clytia hemisphaerica | exon |
| TCONS_00018085-exon-sc0000287-1491911889:74951..75483 | TCONS_00018085-exon-sc0000287-1491911889:74951..75483 | Clytia hemisphaerica | exon |
| TCONS_00018085-exon-sc0000287-1510915933:74951..75483 | TCONS_00018085-exon-sc0000287-1510915933:74951..75483 | Clytia hemisphaerica | exon |
| TCONS_00018085-exon-sc0000287-1575043694:74951..75483 | TCONS_00018085-exon-sc0000287-1575043694:74951..75483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:70324..75483 + |
Blast
The following BLAST results are available for this feature:
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