TCONS_00018080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018080
Unique NameTCONS_00018080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018080 ID=TCONS_00018080|Name=TCONS_00018080|organism=Clytia hemisphaerica|type=transcript|length=291bp
CGAACATACACAAGTGAAACAATCTCTTTCACATAGGTACACAGAtacaa
aacacaagaaaaaggaATAAATAGAAATAAGACAATAAACAGAGATACCA
ACAGAGTCAGTTGCGGTCTTGAGAAAACACCNAgattatttacaaaattt
tgtcgtctttttatttataacttttcgaatttataATGTACattatttaa
tttgattttatgTAAAAAAGCTAAACATTTATagagaattttgaatttta
aaacatataTACCGAAAAATTTACCCACAATTATCTTTGTG
Run BLAST on NCBI

transcript from alignment at sc0000284:243898..244188

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018080 ID=TCONS_00018080|Name=TCONS_00018080|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0000284:243898..244188 (Clytia hemisphaerica)
CACAAAGATAATTGTGGGTAAATTTTTCGGTAtatatgttttaaaattca
aaattctctATAAATGTTTAGCTTTTTTAcataaaatcaaattaaataat
GTACATtataaattcgaaaagttataaataaaaagacgacaaaattttgt
aaataatcTNGGTGTTTTCTCAAGACCGCAACTGACTCTGTTGGTATCTC
TGTTTATTGTCTTATTTCTATTTATtcctttttcttgtgttttgtaTCTG
TGTACCTATGTGAAAGAGATTGTTTCACTTGTGTATGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010138XLOC_010138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018080-exon-sc0000284-1491911889:243898..244188TCONS_00018080-exon-sc0000284-1491911889:243898..244188Clytia hemisphaericaexon
TCONS_00018080-exon-sc0000284-1510915933:243898..244188TCONS_00018080-exon-sc0000284-1510915933:243898..244188Clytia hemisphaericaexon
TCONS_00018080-exon-sc0000284-1575043694:243898..244188TCONS_00018080-exon-sc0000284-1575043694:243898..244188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:243898..244188 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.546189	1.02748	4.01495	3.93396	2.32534	2.75627	4.1666	1.65076	0.427213	1.51709	0	0.37706	0.573395	0.297738	1.06956	1.84591	2.54864	0.995069	0.458247	1.91809	1.48766	0.804422	0	0	0.462831	2.89146	0.591096	0	0	0.48748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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