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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018067 ID=TCONS_00018067|Name=TCONS_00018067|organism=Clytia hemisphaerica|type=transcript|length=1707bp
TTCTACAGGAAATAAATGCTTACATAAAATGGATCATGGAGATAGTCAAC
ATATACAATTCGTTCAATCACCAACGGAAAGAACACCCCTGTTAATTTCT
GCACCAAGTGTTGATTCCATCAATAATCCGCTTCAagagaaattacaaat
taagaaacaaaaattggtTTATTCTTCAATCACCTTAGCAGATATTTTCC
AGAAATCAGTTCATACTACCTTCATTACCTCATTTTTACTCTTCANAAAA
AATCCTTCTTTAAAACCACTAATAAGCCTCTTTTTCTACAGGAAATAAAT
GCTTACATAAAATGGATCATGGAGATAGTCAACATATACAATTCGTTCAA
TCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGTGTTGATTC
CATCAATAATCCGCTTCAagagaaattacaaattaagaaacaaaaattgg
tTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAGTTCATACT
ACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTTGGATCTAGA
CTACAAAAACTCTTTAgcttcttattatttatttggattAACATCTGGAC
TATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGAGTAGACAG
AATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTTGGTGGTAT
GTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTCGTAccaat
attttgttttgatccCGTTATTCTTTATATGCATAGGTGAAGGAATGTGC
AAAAGTTGCATCAGTGATTTTACACAGTtacaatttgatgaaaaatttat
gCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGATTGGACACA
TTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTGAGTTTACT
GCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTAGCTGGACT
TCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGGACGAAATG
CATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGatgcaaaagaa
aagaaagacctACATATGGAGCAAAGAAAGAGAGCCAGTTCTTTCCATGA
ATCATACGAGGGGCGTGATTTTGTTGGCCATTGGATGGATTATGCAAAAC
ATTCATTTGGTGGCTCCTTCACTGATAATCTTGTAGATCAAACAAAAGCA
TTCTTCAAAATCTCATTattgtttctttctttcattccATACTGGGTTGC
TAACGCTCAAGTTTATGGTACCTTTATGTTCCAAGATTTTCATTTGCAAC
GAAAGATTGGTAACTTGCGTGTTCCTGTAACATGGATGGCTTTATTTCAT
GTAGCTTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGTTGATTGTACC
GTTTTGTAGAAGGAAAGGCATCATCTTCACGTCACATTGGAAAATTTCTA
TAGGAATGGTGTTTGGAATAGTAGCAATGATTTGCGCTGCTTTTGTTGAA
CTTGTGGCTCACACTTCTGACATAAACAATCAAGGAGAAGAACTCATTCA
TCAAATTGGAAATAAGAATCTGACTTTCACCGATGTTCATGTCTTGTGGA
CTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGGTTCTCATCGGATTG
ACAGGTA Run BLAST on NCBI transcript from alignment at sc0000284:248784..252105- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018067 ID=TCONS_00018067|Name=TCONS_00018067|organism=Clytia hemisphaerica|type=transcript|length=3322bp|location=Sequence derived from alignment at sc0000284:248784..252105- (Clytia hemisphaerica)
TTCTACAGGAAATAAATGCTTACATAAAATGGATCATGGAGATAGTCAAC
ATATACAATTCGTTCAATCACCAACGGAAAGAACACCCCTGTTAATTTCT
GCACCAAGTGTTGATTCCATCAATAATCCGCTTCAAGAGAAATTACAAAT
TAAGAAACAAAAATTGGTTTATTCTTCAATCACCTTAGCAGATATTTTCC
AGAAATCAGTTCATACTACCTTCATTACCTCATTTTTACTCTTCANAAAA
AATCCTTCTTTAAAACCACTAATAAGCCTCTTTTTCTACAGGAAATAAAT
GCTTACATAAAATGGATCATGGAGATAGTCAACATATACAATTCGTTCAA
TCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGTGTTGATTC
CATCAATAATCCGCTTCAAGAGAAATTACAAATTAAGAAACAAAAATTGG
TTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAGTTCATACT
ACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTTGGATCTAGA
CTACAAAAACTCTTTAGCTTCTTATTATTTATTTGGATTAACATCTGGAC
TATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGAGTAGACAG
AATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTTGGTGGTAT
GTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTCGTACCAAT
ATTTTGTTTTGATCCCGTTATTCTTTATATGCATAGGTGAAGGAATGTGC
AAAAGTTGCATCAGTGATTTTACACAGTTACAATTTGATGAAAAATTTAT
GCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGATTGGACACA
TTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTGAGTTTACT
GCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTAGCTGGACT
TCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGGACGAAATG
CATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGATGCAAAAGAA
AAGAAAGACCTACATATGGAGCAAAGAAAGAGGTCAGTTAAAAAATAACA
TTATTTTGATTTTGATTTAAAGCATTGATTTAAGTTTTTGGTGCAGAGGT
TTTGTGCTTATCGGTTCTTTAGTCTTTAGTACACTTTCGATTCAACCATT
CTGTGTCTAGCTTTCTAATTCACAGAAAGTAGATCCTTTTAAAAGCATTG
CTCCAAAACATTTTGATCTGTAAACTTCTTAAATTGAGACATGTTCTTTT
TTAGAGCCAGTTCTTTCCATGAATCATACGAGGGGCGTGATTTTGTTGGC
CATTGGATGGATTATGCAAAACATTCATTTGGTGGCTCCTTCACTGATAA
TCTTGTAGATCAAACAAAAGCATTCTTCAAAATCTCATTATTGTTTCTTT
CTTTCATTCCATACTGGGTTGCTAACGCTCAAGTAAGTTACCTTACAGTA
AATCAATATTCCGGAGCGGGATGATTATATGGGTGCCGGATATGTACGAG
CCATAAGAGACTCTCGAAAGTCTCTTAATAAAGAGGTACAAAGAGAAAGT
TATCTGTAAGGGCTCCAAAATTACGAAAATCTAAGATCTACTCTCTCAAA
GGGTCATAACTTCTTGAAATTTGGACTAAAATTTGCAAATTTTGGCTGAA
ATTTTGTGGATATAGTCTCTCTAATAGTCGATTTTCGAACTTTGGCTCGG
ACATGCTCGTCATCTCGCAAAACCTAGTATTCCTCCAGTCAATGGGCATC
TCCTGAAATAATCAGTGCCCCCCTGTTGAGGATATGGAATATCTACAAGG
GAGGAGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAGGGGG
CCTTTACTAATAAAGTATTNTTGTTTTCTATTAGATTTGAAGCTTTTGAA
ATTGAGATTCACCAAAAAGATAAAAACAACTCATTCAAAAAAAGTCTTAC
TGGAAAGTTCTTAAGTTCTTTCTAGCAAAGGTAACTTTGAGCTCAGCTGA
GACTTTGAATGGTGTCAGGAGCTAGCCAAACGCTCAAAGTTTCTATTCAG
TCACCTGATATGAGTCACTTTCTTGAGTTCATAAATTTTTTCCTAAGATT
CCCTCTGTTATGCCGTAAAGAAAAGGGACTCTCCCAGAAAATGTCTGTAA
ATGGGGGAGGGGGTGGAAGATATAGTGTCTGAAGGTAGTGAAAAGTCTAC
AAAATTTGCCTTGTCCGGGGTGTAAACCTACTCTGTTTGGGGATAATTTT
GATTGTCCACCGGGTCAACTAATGCTTGTCATCCTTGCTTGCTTGTAAAT
TTCCAAAAATTGTTATATCCTCCGTACCCCTTGTATTCAAATTTTTTCTG
GAAAAGCCCAAGCCTGTAACAGATACTACTGAAGAGAAAAAAAACAAAGT
AAAATTTGAGCGCAAAACAATGATATACTATATTTTTCAGGTTTATGGTA
CCTTTATGTTCCAAGATTTTCATTTGCAACGAAAGATTGGTAACTTGCGT
GTTCCTGTAACATGGATGGCTTTATTTCATGTAGCTTCAGTGTTGATTTT
TGTTCAAGTGTTGGATAAGTTGATTGTACCGTTTTGTAGAAGGAAAGGCA
TCATCTTCACGTCACATTGGAAAATTTCTATAGGAATGGTGTTTGGAATA
GTAGCAATGATTTGCGGTATATTGTTTTTATATTTTAAAAACTTCCACCA
TCAACAAGGTTTTTTTCCAGTTTGTTCAAAATCAGAAGTTCGAATTTTAA
GAATAAAAAGACACACCCTTTCTTAGAATAAATCTTTTAAGAAACCTTGA
TTTCTCACATAAAAGGTACGTTGGAATAAACAATGTAAAGCAGGAAGATT
GTGTGTGCATTCGGATAAGTTGGGATATTTTGCAACATGCTTTGTCATTT
TTGGTAGCGATAGCTTTACNCGGATAAGTTGGGATATTTTGCAACATGCT
TTGTCATTTTTGGTAGCGATAGCTTTACCATATAAATAAAACAAACGAAA
GCGGGAGACATGGTCATTTATCTATTTCTTGAATCTTTTTTTTTTCCACA
GCTGCTTTTGTTGAACTTGTGGCTCACACTTCTGACATAAACAATCAAGG
AGAAGAACTCATTCATCAAATTGGAAATAAGAATCTGACTTTCACCGATG
TTCATGTCTTGTGGACTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAG
GTTCTCATCGGATTGACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018067-exon-sc0000284-1575043694:250974..252105 | TCONS_00018067-exon-sc0000284-1575043694:250974..252105 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1575043694:250574..250751 | TCONS_00018067-exon-sc0000284-1575043694:250574..250751 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1575043694:249340..249565 | TCONS_00018067-exon-sc0000284-1575043694:249340..249565 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1575043694:248784..248954 | TCONS_00018067-exon-sc0000284-1575043694:248784..248954 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1510915933:250974..252105 | TCONS_00018067-exon-sc0000284-1510915933:250974..252105 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1510915933:250574..250751 | TCONS_00018067-exon-sc0000284-1510915933:250574..250751 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1510915933:249340..249565 | TCONS_00018067-exon-sc0000284-1510915933:249340..249565 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1510915933:248784..248954 | TCONS_00018067-exon-sc0000284-1510915933:248784..248954 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1491911889:250974..252105 | TCONS_00018067-exon-sc0000284-1491911889:250974..252105 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1491911889:250574..250751 | TCONS_00018067-exon-sc0000284-1491911889:250574..250751 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1491911889:249340..249565 | TCONS_00018067-exon-sc0000284-1491911889:249340..249565 | Clytia hemisphaerica | exon |
| TCONS_00018067-exon-sc0000284-1491911889:248784..248954 | TCONS_00018067-exon-sc0000284-1491911889:248784..248954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000284 | supercontig | sc0000284:248784..252105 - |
Blast
BLAST of TCONS_00018067 vs. Swiss-Prot (Human)
Match: S15A4 (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.445e-24 Identity = 92/343 (26.82%), Postives = 162/343 (47.23%), Query Frame = 3
Query: 705 GFTSHVDSSSPASYQYFVLIPLFFICIGEGMCKSCISDFTQLQFDEKFMPEKLSAYLKRLFWIGHIGAFIMILFLLGIVEFTAFEXXXXXXXXXXXXXXXXFMSGWNNFEVYGRNASSVVYLVKMIVDDAKEKKDLHMEQR--KRASSFHESYEGRDFVGHWMDYAKHSFGGSFTDNLVDQTKAXXXXXXXXXXXXPYWVANAQVYGTFMFQDFHLQ-RKIGNLR-----VPVTWMALFHVASVLIFVQVLDKLIVPFCRRKGIIFTSHWKISIGMVFGIVAMICAAFVELVAHTSDINNQGEELIHQ-IGNKNLTFTDVHVLWTVPQFCFLGISEVLIGLTG 1706
G + SPA++ VL+ L G K+ I+ F Q ++ PE + +W ++GA + + + I + +F Y + +C+ + F+ G + F + S+ + K++ +K Q + F +S + F D K S GG FT+ V+ KA KI +FL+ IPYW Q+ T++ Q HL+ +I N+ +P W+ +F +L+ + + DKL+ P RR G++ +S +I++GM F ++C+AF + + +N E+ I+Q IGN D+ + W VPQ+ +GISE+ + G
Sbjct: 145 GPDAAARCCSPATFAGLVLVGL-----GVATVKANITPFGADQVKDR-GPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCGQSVFITKPPDGSAFTDMFKILTYSCCSQKRSGERQSNGEGIGVFQQSSKQSLF-----DSCKMSHGGPFTEEKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRRHGLLPSSLKRIAVGMFF----VMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAG 472
The following BLAST results are available for this feature:
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