TCONS_00018035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018035
Unique NameTCONS_00018035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018035 ID=TCONS_00018035|Name=TCONS_00018035|organism=Clytia hemisphaerica|type=transcript|length=456bp
NNTGGCttcaaaaattcgaaacattaaTATCGTACGTTCACACCATCTGG
TCTGATCCAATCGTGATTACTGGTGATACAAATATCGATCTCCTGAAAGA
GAACTACAACGTTGCTGACGAATATAAAGATACCCTAGATCGTCTCGGTT
TACGTCAACAAGTGAAGAAGCCAACCCGGAAGGGAAAACCCTGCATTGAT
CATATCGTTACCTCATTCTCAAAAGTCATCCACGATGATGTTATCCCATG
CGACGAAATGAGCGATCATGATGCTGCCTTCGTCATATGTAATCTACGCA
AGCCACGGTTTGAACCCAGatataaatttattcgaaatgagaaaaacttt
aatttagCAGCATTTAAAACAGATATCAGACAAATACCGTTCAATCTTGT
TTACGCTTTTGATACCGCTGAAGAAAAACTAGACAtatttaacaaacttt
ttacCG
Run BLAST on NCBI

protein sequence of TCONS_00018035-protein

>TCONS_00018035-protein ID=TCONS_00018035-protein|Name=TCONS_00018035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
WLQKFETLISYVHTIWSDPIVITGDTNIDLLKENYNVADEYKDTLDRLGL
RQQVKKPTRKGKPCIDHIVTSFSKVIHDDVIPCDEMSDHDAAFVICNLRK
PRFEPRYKFIRNEKNFNLAAFKTDIRQIPFNLVYAFDTAEEKLDIFNKLF
T
Run BLAST on NCBI

transcript from alignment at sc0000282:305064..305519

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018035 ID=TCONS_00018035|Name=TCONS_00018035|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0000282:305064..305519 (Clytia hemisphaerica)
CGgtaaaaagtttgttaaataTGTCTAGTTTTTCTTCAGCGGTATCAAAA
GCGTAAACAAGATTGAACGGTATTTGTCTGATATCTGTTTTAAATGCTGc
taaattaaagtttttctcatttcgaataaatttatatCTGGGTTCAAACC
GTGGCTTGCGTAGATTACATATGACGAAGGCAGCATCATGATCGCTCATT
TCGTCGCATGGGATAACATCATCGTGGATGACTTTTGAGAATGAGGTAAC
GATATGATCAATGCAGGGTTTTCCCTTCCGGGTTGGCTTCTTCACTTGTT
GACGTAAACCGAGACGATCTAGGGTATCTTTATATTCGTCAGCAACGTTG
TAGTTCTCTTTCAGGAGATCGATATTTGTATCACCAGTAATCACGATTGG
ATCAGACCAGATGGTGTGAACGTACGATAttaatgtttcgaatttttgaa
GCCANN

Coding sequence (CDS) from alignment at sc0000282:305064..305519

>TCONS_00018035 ID=TCONS_00018035|Name=TCONS_00018035|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000282:305064..305519 (Clytia hemisphaerica)
GgtaaaaagtttgttaaataTGTCTAGTTTTTCTTCAGCGGTATCAAAAG
CGTAAACAAGATTGAACGGTATTTGTCTGATATCTGTTTTAAATGCTGct
aaattaaagtttttctcatttcgaataaatttatatCTGGGTTCAAACCG
TGGCTTGCGTAGATTACATATGACGAAGGCAGCATCATGATCGCTCATTT
CGTCGCATGGGATAACATCATCGTGGATGACTTTTGAGAATGAGGTAACG
ATATGATCAATGCAGGGTTTTCCCTTCCGGGTTGGCTTCTTCACTTGTTG
ACGTAAACCGAGACGATCTAGGGTATCTTTATATTCGTCAGCAACGTTGT
AGTTCTCTTTCAGGAGATCGATATTTGTATCACCAGTAATCACGATTGGA
TCAGACCAGATGGTGTGAACGTACGATAttaatgtttcgaatttttgaaG
CCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010111XLOC_010111Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018035-proteinTCONS_00018035-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018035-exon-sc0000282-1491911889:305064..305519TCONS_00018035-exon-sc0000282-1491911889:305064..305519Clytia hemisphaericaexon
TCONS_00018035-exon-sc0000282-1510915933:305064..305519TCONS_00018035-exon-sc0000282-1510915933:305064..305519Clytia hemisphaericaexon
TCONS_00018035-exon-sc0000282-1575043694:305064..305519TCONS_00018035-exon-sc0000282-1575043694:305064..305519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:305064..305519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19334	1.14024	1.45222	0.598381	0.581098	1.46877	1.09165	0.345762	0.548817	1.11196	1.05431	1.54686	1.38515	1.15939	1.23803	0.918065	0.373028	0.685659	1.24418	1.07983	0.56509	0.325232	0.394644	0.525636	1.42007	1.13274	0	0	2.26629	0.921508
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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