TCONS_00018032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018032
Unique NameTCONS_00018032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018032 ID=TCONS_00018032|Name=TCONS_00018032|organism=Clytia hemisphaerica|type=transcript|length=327bp
AACGAAGTTGACTTTTGTAACAAATCTTCTGGTATTTTGTTCAATAAAGA
AGGAGGACACTTCAAAGTAAGTTCTCCTTGTTTGCAATTGAAGTATGGTG
GACCATTATGGATCATGATCTCTGTCTCGTATTTCTCACCTGATACCAAA
GAAATGAGATACTTTTCATCCTCATCATATGATGGATTATATACTGCAAG
AGAATTAAGAATGTTTTCGATGTTCAACTCGTTTATCATATCGATGATAC
TTCTGACATACATACTATTTATCACAATTTCTGACGATGTGATTGGTGTG
TTGTACGATAACAAGCGTTGAATGAAT
Run BLAST on NCBI

protein sequence of TCONS_00018032-protein

>TCONS_00018032-protein ID=TCONS_00018032-protein|Name=TCONS_00018032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
FIQRLLSYNTPITSSEIVINSMYVRSIIDMINELNIENILNSLAVYNPSY
DEDEKYLISLVSGEKYETEIMIHNGPPYFNCKQGELTLKCPPSLLNKIPE
DLLQKSTS
Run BLAST on NCBI

transcript from alignment at sc0000282:273071..273397

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018032 ID=TCONS_00018032|Name=TCONS_00018032|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0000282:273071..273397 (Clytia hemisphaerica)
ATTCATTCAACGCTTGTTATCGTACAACACACCAATCACATCGTCAGAAA
TTGTGATAAATAGTATGTATGTCAGAAGTATCATCGATATGATAAACGAG
TTGAACATCGAAAACATTCTTAATTCTCTTGCAGTATATAATCCATCATA
TGATGAGGATGAAAAGTATCTCATTTCTTTGGTATCAGGTGAGAAATACG
AGACAGAGATCATGATCCATAATGGTCCACCATACTTCAATTGCAAACAA
GGAGAACTTACTTTGAAGTGTCCTCCTTCTTTATTGAACAAAATACCAGA
AGATTTGTTACAAAAGTCAACTTCGTT

Coding sequence (CDS) from alignment at sc0000282:273071..273397

>TCONS_00018032 ID=TCONS_00018032|Name=TCONS_00018032|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000282:273071..273397 (Clytia hemisphaerica)
TTCATTCAACGCTTGTTATCGTACAACACACCAATCACATCGTCAGAAAT
TGTGATAAATAGTATGTATGTCAGAAGTATCATCGATATGATAAACGAGT
TGAACATCGAAAACATTCTTAATTCTCTTGCAGTATATAATCCATCATAT
GATGAGGATGAAAAGTATCTCATTTCTTTGGTATCAGGTGAGAAATACGA
GACAGAGATCATGATCCATAATGGTCCACCATACTTCAATTGCAAACAAG
GAGAACTTACTTTGAAGTGTCCTCCTTCTTTATTGAACAAAATACCAGAA
GATTTGTTACAAAAGTCAACTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010108XLOC_010108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018032-proteinTCONS_00018032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018032-exon-sc0000282-1491911889:273071..273397TCONS_00018032-exon-sc0000282-1491911889:273071..273397Clytia hemisphaericaexon
TCONS_00018032-exon-sc0000282-1510915933:273071..273397TCONS_00018032-exon-sc0000282-1510915933:273071..273397Clytia hemisphaericaexon
TCONS_00018032-exon-sc0000282-1575043694:273071..273397TCONS_00018032-exon-sc0000282-1575043694:273071..273397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:273071..273397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281802	0	0	0	0	0.896928	0	1.37059	0	0.884583	0	0.783175	1.65766	0.359248	4.16112	4.32985	1.73946	2.86521	4.41072	8.29493	0.76223	0.850702	1.44071	0.940183	0	0	3.16945	2.20775	0.810255	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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