TCONS_00018029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018029
Unique NameTCONS_00018029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018029 ID=TCONS_00018029|Name=TCONS_00018029|organism=Clytia hemisphaerica|type=transcript|length=284bp
NNACGCTTCAGAATGACAGACTTTACCATTCAGATCAGTGGCTTGAAAAC
TTAATTAAAACTCATACCTCCTTCGCTCCAGACATAAACTTGTAGAATGG
GTAAAATAAACATTCATCGGAAATCTCAGAAATCACAGTTTTAATGATAC
ACTCAACAGATTATTGtacacaaaatttaaaatactgTATGCAAGGTTCT
AATAACTAGACTCGACAGGAATTTGATTGATGGTGAGATGGTggatttga
tggattttttataCAATTAATATCACAGAATANN
Run BLAST on NCBI

transcript from alignment at sc0000282:154457..154740

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018029 ID=TCONS_00018029|Name=TCONS_00018029|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at sc0000282:154457..154740 (Clytia hemisphaerica)
NNTATTCTGTGATATTAATTGtataaaaaatccatcaaatccACCATCTC
ACCATCAATCAAATTCCTGTCGAGTCTAGTTATTAGAACCTTGCATAcag
tattttaaattttgtgtaCAATAATCTGTTGAGTGTATCATTAAAACTGT
GATTTCTGAGATTTCCGATGAATGTTTATTTTACCCATTCTACAAGTTTA
TGTCTGGAGCGAAGGAGGTATGAGTTTTAATTAAGTTTTCAAGCCACTGA
TCTGAATGGTAAAGTCTGTCATTCTGAAGCGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010105XLOC_010105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018029-exon-sc0000282-1491911889:154457..154740TCONS_00018029-exon-sc0000282-1491911889:154457..154740Clytia hemisphaericaexon
TCONS_00018029-exon-sc0000282-1510915933:154457..154740TCONS_00018029-exon-sc0000282-1510915933:154457..154740Clytia hemisphaericaexon
TCONS_00018029-exon-sc0000282-1575043694:154457..154740TCONS_00018029-exon-sc0000282-1575043694:154457..154740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:154457..154740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.821602	0	0	24.9383	19.3717	56.6958	64.8038	19.1812	26.6109	27.3915	24.9403	27.0376	22.4582	5.84055	7.27544	4.98272	5.48856	51.0136	45.9728	17.3043	20.2838	16.4394	16.1753	7.18981	13.9271	57.1899	45.4785	11.9895	10.8265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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