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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018027 ID=TCONS_00018027|Name=TCONS_00018027|organism=Clytia hemisphaerica|type=transcript|length=905bp
AAAGTTGTAGATTTTTTAAACATAGGGGGGTTTGAACCTTTGATATCGAA
AACTTTTCATGATTGACGATAATTTAGATAGAAGTGAAAGTTGTACGTAA
AAAAGTAAAGTGGAGAAACTTTAATCATAATCACAATGAACGAAGCACAC
TGCGCAGTCGATCGAGGAATGGATCCGagggaagaaattcaaagaCTTAA
ACAAGAAAATGCAAAGTTGAGAGAAGacaaggaaaaagaaaatctgaaaC
ACCAGATAAAGTGTTTAGAGATggaaaaagaaatccaaaatcTCAAACAT
GACCAAGAAATTATTAAACTAAAAGTAGACCAAAAACAAGCTGCAGTTAA
TCGTGCTTTGGAGGGTGAAATTCAAACGCTAAAACATAAAATTGAGTTGC
TTAAAATAAAGCTGGGACAAAATGATGCACAAAATCCTCCTGTTTCTAAG
CTAGGTCGACTTGTTTGGGGAGCTGAGATGTTTTTTGAAGGAAACATAAC
ACAACGGGTTGATTTGTACCCCTCGTATAAGGAATGGTATGAAAATATAA
GTTCCTTTATGGGGAACAAAGAACTTTACAGAACGAAAAAATTCTCCTTT
ATGAAGAAGGAATTTGAAGAGTGTAAAGATTACTTGGGTTTAGTTTTGAG
CACGTGCCTTATGTTGGAACAAAAACGATTATTTATGGTTCAAGGGCTCC
CAAAAAGCCTATGGGAGAATGTAACCATTTCTGTGCTCCACCCTACCGAT
TCAAATAAATGCGCACAAATGGTAAGAATTAACAAACGTGACACTTTTGA
ACAATGGTCTTACAAAGATATTCCTGAAGATTTTTTTTACGGCGATTTGA
AATCAGCTATTGTTTTCATTCATGTCTACCAGTAAGTTAAGTTTGTTAGC
CGTTT Run BLAST on NCBI protein sequence of TCONS_00018027-protein >TCONS_00018027-protein ID=TCONS_00018027-protein|Name=TCONS_00018027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MNEAHCAVDRGMDPREEIQRLKQENAKLREDKEKENLKHQIKCLEMEKEI
QNLKHDQEIIKLKVDQKQAAVNRALEGEIQTLKHKIELLKIKLGQNDAQN
PPVSKLGRLVWGAEMFFEGNITQRVDLYPSYKEWYENISSFMGNKELYRT
KKFSFMKKEFEECKDYLGLVLSTCLMLEQKRLFMVQGLPKSLWENVTISV
LHPTDSNKCAQMVRINKRDTFEQWSYKDIPEDFFYGDLKSAIVFIHVYQ Run BLAST on NCBI transcript from alignment at sc0000282:127823..128727 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018027 ID=TCONS_00018027|Name=TCONS_00018027|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at sc0000282:127823..128727 (Clytia hemisphaerica)
AAACGGCTAACAAACTTAACTTACTGGTAGACATGAATGAAAACAATAGC
TGATTTCAAATCGCCGTAAAAAAAATCTTCAGGAATATCTTTGTAAGACC
ATTGTTCAAAAGTGTCACGTTTGTTAATTCTTACCATTTGTGCGCATTTA
TTTGAATCGGTAGGGTGGAGCACAGAAATGGTTACATTCTCCCATAGGCT
TTTTGGGAGCCCTTGAACCATAAATAATCGTTTTTGTTCCAACATAAGGC
ACGTGCTCAAAACTAAACCCAAGTAATCTTTACACTCTTCAAATTCCTTC
TTCATAAAGGAGAATTTTTTCGTTCTGTAAAGTTCTTTGTTCCCCATAAA
GGAACTTATATTTTCATACCATTCCTTATACGAGGGGTACAAATCAACCC
GTTGTGTTATGTTTCCTTCAAAAAACATCTCAGCTCCCCAAACAAGTCGA
CCTAGCTTAGAAACAGGAGGATTTTGTGCATCATTTTGTCCCAGCTTTAT
TTTAAGCAACTCAATTTTATGTTTTAGCGTTTGAATTTCACCCTCCAAAG
CACGATTAACTGCAGCTTGTTTTTGGTCTACTTTTAGTTTAATAATTTCT
TGGTCATGTTTGAgattttggatttctttttccATCTCTAAACACTTTAT
CTGGTGtttcagattttctttttccttgtCTTCTCTCAACTTTGCATTTT
CTTGTTTAAGtctttgaatttcttccctCGGATCCATTCCTCGATCGACT
GCGCAGTGTGCTTCGTTCATTGTGATTATGATTAAAGTTTCTCCACTTTA
CTTTTTTACGTACAACTTTCACTTCTATCTAAATTATCGTCAATCATGAA
AAGTTTTCGATATCAAAGGTTCAAACCCCCCTATGTTTAAAAAATCTACA
ACTTT Coding sequence (CDS) from alignment at sc0000282:127823..128727 >TCONS_00018027 ID=TCONS_00018027|Name=TCONS_00018027|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000282:127823..128727 (Clytia hemisphaerica)
TTACTGGTAGACATGAATGAAAACAATAGCTGATTTCAAATCGCCGTAAA
AAAAATCTTCAGGAATATCTTTGTAAGACCATTGTTCAAAAGTGTCACGT
TTGTTAATTCTTACCATTTGTGCGCATTTATTTGAATCGGTAGGGTGGAG
CACAGAAATGGTTACATTCTCCCATAGGCTTTTTGGGAGCCCTTGAACCA
TAAATAATCGTTTTTGTTCCAACATAAGGCACGTGCTCAAAACTAAACCC
AAGTAATCTTTACACTCTTCAAATTCCTTCTTCATAAAGGAGAATTTTTT
CGTTCTGTAAAGTTCTTTGTTCCCCATAAAGGAACTTATATTTTCATACC
ATTCCTTATACGAGGGGTACAAATCAACCCGTTGTGTTATGTTTCCTTCA
AAAAACATCTCAGCTCCCCAAACAAGTCGACCTAGCTTAGAAACAGGAGG
ATTTTGTGCATCATTTTGTCCCAGCTTTATTTTAAGCAACTCAATTTTAT
GTTTTAGCGTTTGAATTTCACCCTCCAAAGCACGATTAACTGCAGCTTGT
TTTTGGTCTACTTTTAGTTTAATAATTTCTTGGTCATGTTTGAgattttg
gatttctttttccATCTCTAAACACTTTATCTGGTGtttcagattttctt
tttccttgtCTTCTCTCAACTTTGCATTTTCTTGTTTAAGtctttgaatt
tcttccctCGGATCCATTCCTCGATCGACTGCGCAGTGTGCTTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018027-exon-sc0000282-1491911889:127823..128727 | TCONS_00018027-exon-sc0000282-1491911889:127823..128727 | Clytia hemisphaerica | exon |
| TCONS_00018027-exon-sc0000282-1510915933:127823..128727 | TCONS_00018027-exon-sc0000282-1510915933:127823..128727 | Clytia hemisphaerica | exon |
| TCONS_00018027-exon-sc0000282-1575043694:127823..128727 | TCONS_00018027-exon-sc0000282-1575043694:127823..128727 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:127823..128727 . |
Blast
The following BLAST results are available for this feature:
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