TCONS_00017991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017991
Unique NameTCONS_00017991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017991 ID=TCONS_00017991|Name=TCONS_00017991|organism=Clytia hemisphaerica|type=transcript|length=757bp
CAGAACTATaacaaatcaaatttgaaattagaTCTCAATGAGGGAAAGAG
AAAAGCATAAAAAGTTGACAGAGAAGTCTTGAAAGAAGCATTTATAAAAT
ATCATCAAACGAGAGAAAACTCGACAAGAAACACAACAAAATATTATAAA
CTTGAATAACTTTGTTTACTTGTTATGTCCCAAGTGGCTTTCCTCGATCG
ATCGTTGGTTATGAGCCAGAACTATaacaaatcaaatttgaaattagaTC
TCAATGAGGGAGCTGGCAACTCGAGGAAGAGATCGTTTTTANTGTAACTG
AATAACACATGAGATTTTTCAGATGTGTAATTTTTGAAAGGCcttatttt
gatatattttatcAAGGGATTGAAAATTCCCTTCACCTATNACTTGGAAG
TCCAGAACTTGAGAAACTTATTATAAATACTGGAGGATTTATTCCAACAC
CGACTCCAAACGGACTATCGTTTGCAGCAGCAAATGCTCACAATGAGCAT
GGAACTGAAgatcaagaaagttttttagCCCGCGGCTTCATTGAAGCTTT
ACANTATTTTAGGATttaagaaattatattgttaagtttttttgacaaat
tataAAACTAGCTAATAAACAATaacatataaaaatgaaaacaaattttt
tgtctCGTTTGTTTTCCACAGATCCTTTACTTCAATATTTAAGCTAAGCT
AAATCTATTTCTTTACTTCATGAAAAATTCAGGGATTTTCTTATATAAAT
GTAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000282:4258..5801-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017991 ID=TCONS_00017991|Name=TCONS_00017991|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000282:4258..5801- (Clytia hemisphaerica)
CAGAACTATAACAAATCAAATTTGAAATTAGATCTCAATGAGGGAGCTGG
CAACTCGAGGAAGAGATCGTTTTTAAATGTTGCTGCCTCGCCAGCAATCC
TTGCTTCTCCTGATTTGAAACTATTGAAGCTTGGAAGTCCAGAACTTGAG
AAACTTATTATAAATACTGGAGGATTTATTCCAACACCGACTCCAAATGG
ACTATCGTTTGCAGCAGCAAATGCTCACAATGAGCATGGAACTGAAGATC
AAGAAAGTTTTTTAGCCCGCGGCTTCATTGAAGCTTTACAAAGGCTACAA
CAACAAGATGGCCCAGGAACTACTTCAGCACCAACAACCAAACAATGGAC
AGTTCCTTCAGTTCAAGTTACAAATGAATCGATAAGCACATCATCAAAAG
TTGAGACTAGCAGATGGCCAGGACAACCTCAAAGTAATTCAGTTTCTGTG
ATAACACCAACAAACCCTAACACACCAAGATTACCTGAAATTACAGCACC
TTCTACCGTAAATTTACCAATTTCATCAACTGGAACAGTCAGTACAATGG
GTATGACAGCTATTCCACGTAATTCAACATCTTATGTTACGAGACCTACA
GAACTTTCGAATCCTACTTCATNTATTTTTAAGCGGCGTATTGAGTTTAT
GTAGAATAGATTTCTTTTAGTAAGTTAGTCCCCGTTTCCCCTTTCAGAAA
AAAACAACCAATGAGAACGGACTAAAATTCACATGGACCAATCAGAATGT
CGAGTCACTTCCAAAAATAGAACCATTACTCACACACCTTCAAATACAAG
GGATCTTTGAAAGGAGCTACATTCGAGAAGAGAAGAGAAAAGCATAAAAA
GTTGACAGAGAAGTCTTGAAAGAAGCATTTATAAAATATCATCAAACGAG
AGAAAACTCGACAAGAAACACAACAAAATATTATAAACTTGAATAACTTT
GTTTACTTGTTATGTCCCAAGTGGCTTTCCTCGATCGATCGTTGGTTATG
AGCCAGAACTATAACAAATCAAATTTGAAATTAGATCTCAATGAGGGAGC
TGGCAACTCGAGGAAGAGATCGTTTTTANTGTAACTGAATAACACATGAG
ATTTTTCAGATGTGTAATTTTTGAAAGGCCTTATTTTGATATATTTTATC
AAGGGATTGAAAATTCCCTTCACCTATNACTTGGAAGTCCAGAACTTGAG
AAACTTATTATAAATACTGGAGGATTTATTCCAACACCGACTCCAAACGG
ACTATCGTTTGCAGCAGCAAATGCTCACAATGAGCATGGAACTGAAGATC
AAGAAAGTTTTTTAGCCCGCGGCTTCATTGAAGCTTTACANTATTTTAGG
ATTTAAGAAATTATATTGTTAAGTTTTTTTGACAAATTATAAAACTAGCT
AATAAACAATAACATATAAAAATGAAAACAAATTTTTTGTCTCGTTTGTT
TTCCACAGATCCTTTACTTCAATATTTAAGCTAAGCTAAATCTATTTCTT
TACTTCATGAAAAATTCAGGGATTTTCTTATATAAATGTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010086XLOC_010086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017991-exon-sc0000282-1575043694:5757..5801TCONS_00017991-exon-sc0000282-1575043694:5757..5801Clytia hemisphaericaexon
TCONS_00017991-exon-sc0000282-1575043694:4258..4969TCONS_00017991-exon-sc0000282-1575043694:4258..4969Clytia hemisphaericaexon
TCONS_00017991-exon-sc0000282-1510915933:5757..5801TCONS_00017991-exon-sc0000282-1510915933:5757..5801Clytia hemisphaericaexon
TCONS_00017991-exon-sc0000282-1510915933:4258..4969TCONS_00017991-exon-sc0000282-1510915933:4258..4969Clytia hemisphaericaexon
TCONS_00017991-exon-sc0000282-1491911889:5757..5801TCONS_00017991-exon-sc0000282-1491911889:5757..5801Clytia hemisphaericaexon
TCONS_00017991-exon-sc0000282-1491911889:4258..4969TCONS_00017991-exon-sc0000282-1491911889:4258..4969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:4258..5801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000482028	2.8775	0.0663433	0	0	0	0	0	0	0	0	0	0	0.557522	0	0	0	0	0	0	10.0904	8.88235	0.0107356	4.9049	0	0.0962725	0.192989	4.36829	12.2102	28.8078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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