TCONS_00017988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017988
Unique NameTCONS_00017988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017988 ID=TCONS_00017988|Name=TCONS_00017988|organism=Clytia hemisphaerica|type=transcript|length=795bp
TGACGATTCACAAAAAAGATTCTCAGAAAGTTTGGAAGATGTCTCATGGC
TCGATCTAAAGAGGGAGCTCCATATGATGGGGAAATATGAACTCGTTGAC
CATAtcataaagaaatttttgattacTAAAGGTCGTAAAGCTGCTTCTGA
CGGATTACGTAGACATTACGTAAACGATTTGATCCATTGTCTGGTGGAGC
AACCCTTATCTCAAGTAGATGAAGATACCAATTCCGTGTTGCGAGAAGAT
GTGTTTATTGATCTGGTTGTGCTACCATCTTCGACCGTCGACAAAGAATT
GTCTAACTCCGATCGTGCTGCTTTAATGGAACAGCAATACATTCCCAAGA
ACTCACCAAAAACGTCAGTCAACAACATCTTTTCTCAAAAAGACGAATTG
GTCTTCGTGAGGGGGATTGGAGGTATCGGGAAAACGACACTTCTTGAGAT
GCTGACTTATAAATGGGCGAAAGGAGAGCTTGATGCAGAAGTCAatattg
actttgttttcaaatttacatGTCGTAATTTGAACacaatttcaagtcaa
tttacAAACGTTCAAGAACTTTTCGAACTGAAGTATCCTGAAGTCATGAA
ATTGACTTCATTCGACGATCTGATGGAGATTTCTGAGAGGGTTTTGATAG
TCATCGATGGCTTGGACGAACTAAAAGACTTATATCTTCCAGAAAGCTCA
TCAGCTTCAAATAGAGACAGTCTTAATCTAACCGTTTTCAACCTGATAAA
TCCTAAAGCAGATTGCCTCCCAAACCATAAGGTCATCGCATGCGG
Run BLAST on NCBI

protein sequence of TCONS_00017988-protein

>TCONS_00017988-protein ID=TCONS_00017988-protein|Name=TCONS_00017988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
DDSQKRFSESLEDVSWLDLKRELHMMGKYELVDHIIKKFLITKGRKAASD
GLRRHYVNDLIHCLVEQPLSQVDEDTNSVLREDVFIDLVVLPSSTVDKEL
SNSDRAALMEQQYIPKNSPKTSVNNIFSQKDELVFVRGIGGIGKTTLLEM
LTYKWAKGELDAEVNIDFVFKFTCRNLNTISSQFTNVQELFELKYPEVMK
LTSFDDLMEISERVLIVIDGLDELKDLYLPESSSASNRDSLNLTVFNLIN
PKADCLPNHKVIAC
Run BLAST on NCBI

transcript from alignment at sc0000282:267282..271198+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017988 ID=TCONS_00017988|Name=TCONS_00017988|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at sc0000282:267282..271198+ (Clytia hemisphaerica)
TGACGATTCACAAAAAAGATTCTCAGAAAGTTTGGAAGATGTCTCATGGC
TCGATCTAAAGAGGGAGCTCCATATGATGGGGAAATATGAACTCGTTGAC
CATAtcataaagaaatttttgattacTAAAGGTATTAATTGATTTTATAA
TTGATTCGCAGTGGCGCATTTAAGAATTTTGCCAAGtaggtcaaaaattt
gaaaccgAGTGGTTTCAAGTCTGGTTCTTGGAAAGGCTATATTCCTTGCA
TCTCGCgtttatcatttttcatttcatcgctATCTGAGTTATTCTATGCA
AGATTCCACTTTTGTTTAGACGTAGTTTGTATCGCACTCGTACTTTgcaa
attaagaatttttttactcAACGAATAATAgttttgactacctttttacG
CTAATTAACCGCTTGTAGTAAAAAATAGATACTGATGTGGAGCAATGTCC
GTTTCCCCAAAACAAGGCATTTATATCcctcaaattattttttatgtttt
gaattgaataggAAGTAATTAAATGGCGTTAAATCATTTTAAGATATTCA
CTTTCGCTCACAACAACAAccaaaaagctggtaaaaaacaaagttttaaa
agactttTGCAAATGCTTCATTCTTGCTAAAAAATAACCATTATTAGTTC
AACTTAAAGCAGTGACAACTGGTGCTGATGCTTAATACCATGACGATCAA
TTCTTAGCAATCGATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
TAGTCCATCCACTATCCTATAAATAAtgagtttaaaaaaaagtgcTGTAC
CTGTTTTTGATCTGCCTCTCCAATCTTGGTCAAGCAACAATGCTATTGCT
ACTAAAAGGAGTAAAAAAGCCTGTTtcacaatttttcatatttttaattt
CTCGGAACAATGTCACTTGACCTACTTGACCAACCCTATGTACGCCTCTG
ATGATTGATTAGTCGacttattgattgattgatcgattgattgacattga
ttggttgaatttttgattgattgattgatcgattgattaattaattgatt
gatttatttatttattgacttgtcgatttatttatttattgaccgattga
ttgatttattgattgctTGACTTATTGACTGAttgtttttcattgatttt
ataattgattgtttttcattgattttataattgattgtttttcattgatt
ttataattgattgtttttcattgattttataattgcttgtttttcattga
ttttataattgattgtttttcattgattttataattgcttgtttttcatt
gattttataattgcttgtttttcattgattttataattgcttgtttttca
ttgattttataattgattgtttttcattgattttataattgattgttttt
cattgattttataattgattgtttttgattgattgattgtttttgattgt
ttttgattgattgattgtttttgattgtttttgattgattgattgttttt
gattgattgatcgtttttgattgattgattgtttttgattgattgattgt
ttttgattgattgattgtttttgattgattgattgtttttgattgattga
ttgtttttgattgattgattgattgtttttgattgattgattgattgttt
ttgattgattgattgattgtttttgattgattgattgcttgattgattga
ttgattgattgattgattgattgattgattgattgtttttgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgatcgatcgattgattga
ttgattgatcgatCGATCGATCGATCgatcgattgattgattgattgatc
gatTGATTGAATGATTGAATGCTTTAAGTTTTTAACATCATTTCATTTTA
CAGGTCGTAAAGCTGCTTCTGACGGATTACGTAGACATTACGTAAACGAT
TTGATCCATTGTCTGGTGGAGCAACCCTTATCTCAAGTAGATGAAGATAC
CAATTCCGTGTTGCGAGAAGATGTGTTTATTGATCTGGTTGTGCTACCAT
CTTCGACCGTCGACAAAGAATTGTCTAACTCCGATCGTGCTGCTTTAATG
GAACAGCAATACATTCCCAAGAACTCACCAAAAACGTCAGTCAACAACAT
CTTTTCTCAAAAAGACGAATTGGTCTTCGTGAGGGGGATTGGAGGTATCG
GGAAAACGACACTTCTTGAGATGCTGACTTATAAATGGGCGAAAGGAGAG
CTTGATGCAGAAGTCAatattgactttgttttcaaatttacatGTCGTAA
TTTGAACacaatttcaagtcaatttacAAACGTTCAAGAACTTTTCGAAC
TGAAGTATCCTGAAGTCATGAAATTGACTTCATTCGACGATCTGATGGAG
ATTTCTGAGAGGGTTTTGATAGTCATCGATGGCTTGGACGAACTAAAAGA
CTTATATCTTCCAGAAAGCTCATCAGCTTCAAATAGAGACAGTCTTAATC
TAACCGTTTTCAACCTGATAAATCCTAAAGCAGATTGCCTCCCAAACCAT
AAGGTCATCGCATGCGG

Coding sequence (CDS) from alignment at sc0000282:267282..271198+

>TCONS_00017988 ID=TCONS_00017988|Name=TCONS_00017988|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000282:267282..271198+ (Clytia hemisphaerica)
GACGATTCACAAAAAAGATTCTCAGAAAGTTTGGAAGATGTCTCATGGCT
CGATCTAAAGAGGGAGCTCCATATGATGGGGAAATATGAACTCGTTGACC
ATAtcataaagaaatttttgattacTAAAGGTCGTAAAGCTGCTTCTGAC
GGATTACGTAGACATTACGTAAACGATTTGATCCATTGTCTGGTGGAGCA
ACCCTTATCTCAAGTAGATGAAGATACCAATTCCGTGTTGCGAGAAGATG
TGTTTATTGATCTGGTTGTGCTACCATCTTCGACCGTCGACAAAGAATTG
TCTAACTCCGATCGTGCTGCTTTAATGGAACAGCAATACATTCCCAAGAA
CTCACCAAAAACGTCAGTCAACAACATCTTTTCTCAAAAAGACGAATTGG
TCTTCGTGAGGGGGATTGGAGGTATCGGGAAAACGACACTTCTTGAGATG
CTGACTTATAAATGGGCGAAAGGAGAGCTTGATGCAGAAGTCAatattga
ctttgttttcaaatttacatGTCGTAATTTGAACacaatttcaagtcaat
ttacAAACGTTCAAGAACTTTTCGAACTGAAGTATCCTGAAGTCATGAAA
TTGACTTCATTCGACGATCTGATGGAGATTTCTGAGAGGGTTTTGATAGT
CATCGATGGCTTGGACGAACTAAAAGACTTATATCTTCCAGAAAGCTCAT
CAGCTTCAAATAGAGACAGTCTTAATCTAACCGTTTTCAACCTGATAAAT
CCTAAAGCAGATTGCCTCCCAAACCATAAGGTCATCGCATGCGACGATTC
ACAAAAAAGATTCTCAGAAAGTTTGGAAGATGTCTCATGGCTCGATCTAA
AGAGGGAGCTCCATATGATGGGGAAATATGAACTCGTTGACCATAtcata
aagaaatttttgattacTAAAGGTCGTAAAGCTGCTTCTGACGGATTACG
TAGACATTACGTAAACGATTTGATCCATTGTCTGGTGGAGCAACCCTTAT
CTCAAGTAGATGAAGATACCAATTCCGTGTTGCGAGAAGATGTGTTTATT
GATCTGGTTGTGCTACCATCTTCGACCGTCGACAAAGAATTGTCTAACTC
CGATCGTGCTGCTTTAATGGAACAGCAATACATTCCCAAGAACTCACCAA
AAACGTCAGTCAACAACATCTTTTCTCAAAAAGACGAATTGGTCTTCGTG
AGGGGGATTGGAGGTATCGGGAAAACGACACTTCTTGAGATGCTGACTTA
TAAATGGGCGAAAGGAGAGCTTGATGCAGAAGTCAatattgactttgttt
tcaaatttacatGTCGTAATTTGAACacaatttcaagtcaatttacAAAC
GTTCAAGAACTTTTCGAACTGAAGTATCCTGAAGTCATGAAATTGACTTC
ATTCGACGATCTGATGGAGATTTCTGAGAGGGTTTTGATAGTCATCGATG
GCTTGGACGAACTAAAAGACTTATATCTTCCAGAAAGCTCATCAGCTTCA
AATAGAGACAGTCTTAATCTAACCGTTTTCAACCTGATAAATCCTAAAGC
AGATTGCCTCCCAAACCATAAGGTCATCGCATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010084XLOC_010084Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017988-proteinTCONS_00017988-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017988-exon-sc0000282-1491911889:267282..267412TCONS_00017988-exon-sc0000282-1491911889:267282..267412Clytia hemisphaericaexon
TCONS_00017988-exon-sc0000282-1510915933:267282..267412TCONS_00017988-exon-sc0000282-1510915933:267282..267412Clytia hemisphaericaexon
TCONS_00017988-exon-sc0000282-1575043694:267282..267412TCONS_00017988-exon-sc0000282-1575043694:267282..267412Clytia hemisphaericaexon
TCONS_00017988-exon-sc0000282-1491911889:270535..271198TCONS_00017988-exon-sc0000282-1491911889:270535..271198Clytia hemisphaericaexon
TCONS_00017988-exon-sc0000282-1510915933:270535..271198TCONS_00017988-exon-sc0000282-1510915933:270535..271198Clytia hemisphaericaexon
TCONS_00017988-exon-sc0000282-1575043694:270535..271198TCONS_00017988-exon-sc0000282-1575043694:270535..271198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:267282..271198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.356921	0.226656	0.188824	0	1.44074	1.76544	6.1231	6.91212	8.51871	7.76434	7.61338	5.64444	15.2637	13.3685	14.1513	17.4661	10.6216	12.3325	12.1077	14.5177	9.41532	10.9997	6.57213	9.28006	9.35081	13.2677	15.5436	12.3124	9.39275	8.82462
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007111NACHT_NTPase
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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