TCONS_00017957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017957
Unique NameTCONS_00017957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017957 ID=TCONS_00017957|Name=TCONS_00017957|organism=Clytia hemisphaerica|type=transcript|length=527bp
acctaactcagcccctagagtataatttaaatataatataatatatctTT
TTAGTATTTCTTAGTTTTAATTGCTTAGATTAGATAAACTATTTAACAGG
TTCTTTTTCATAGTTTTAGATCCCTTCAAGAAAATTTGTTTAAGGTATGA
ATCATGAAAATCTTAGGCAACTCCACCTTTTTGTTATACTTGAAGCTGTT
ATAATTTATCGCTTTAAGGGACTCTTATAGAGAAAAAGGTTGCCATAGTT
TTTGTCTGGAGGTAGTTTGTGGTGTTCTGgtggtgaaaatcaaaatgaac
aGGGGGGTTATCAAAAAAACAACATATCATCTGACTTCGTgtataatttt
tctttgatttgccGATGGACGCCAGAAAACCCACAGATTTTTTGCCAGTG
ATGGTTCTGCATTTTctagttttgttttgttttgttttgtttttcgtttg
gtattttttataaggCTCTCTTAAAAAGCCGATCAGTCCCTGTTGTATTT
TCTCAaggtaaaatagaaaaatgtggA
Run BLAST on NCBI

protein sequence of TCONS_00017957-protein

>TCONS_00017957-protein ID=TCONS_00017957-protein|Name=TCONS_00017957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
HIFLFYLEKIQQGLIGFLREPYKKYQTKNKTKQNKTRKCRTITGKKSVGF
LASIGKSKKNYTRSQMICCFFDNPPVHFDFHHQNTTNYLQTKTMATFFSI
RVP
Run BLAST on NCBI

transcript from alignment at sc0000279:169286..169812

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017957 ID=TCONS_00017957|Name=TCONS_00017957|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000279:169286..169812 (Clytia hemisphaerica)
TccacatttttctattttacctTGAGAAAATACAACAGGGACTGATCGGC
TTTTTAAGAGAGccttataaaaaataccaaacgaaaaacaaaacaaaaca
aaacaaaactagAAAATGCAGAACCATCACTGGCAAAAAATCTGTGGGTT
TTCTGGCGTCCATCggcaaatcaaagaaaaattatacACGAAGTCAGATG
ATATGTTGTTTTTTTGATAACCCCCCtgttcattttgattttcaccacCA
GAACACCACAAACTACCTCCAGACAAAAACTATGGCAACCTTTTTCTCTA
TAAGAGTCCCTTAAAGCGATAAATTATAACAGCTTCAAGTATAACAAAAA
GGTGGAGTTGCCTAAGATTTTCATGATTCATACCTTAAACAAATTTTCTT
GAAGGGATCTAAAACTATGAAAAAGAACCTGTTAAATAGTTTATCTAATC
TAAGCAATTAAAACTAAGAAATACTAAAAagatatattatattatattta
aattatactctaggggctgagttaggt

Coding sequence (CDS) from alignment at sc0000279:169286..169812

>TCONS_00017957 ID=TCONS_00017957|Name=TCONS_00017957|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000279:169286..169812 (Clytia hemisphaerica)
cacatttttctattttacctTGAGAAAATACAACAGGGACTGATCGGCTT
TTTAAGAGAGccttataaaaaataccaaacgaaaaacaaaacaaaacaaa
acaaaactagAAAATGCAGAACCATCACTGGCAAAAAATCTGTGGGTTTT
CTGGCGTCCATCggcaaatcaaagaaaaattatacACGAAGTCAGATGAT
ATGTTGTTTTTTTGATAACCCCCCtgttcattttgattttcaccacCAGA
ACACCACAAACTACCTCCAGACAAAAACTATGGCAACCTTTTTCTCTATA
AGAGTCCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010069XLOC_010069Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017957-proteinTCONS_00017957-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017957-exon-sc0000279-1491911889:169286..169812TCONS_00017957-exon-sc0000279-1491911889:169286..169812Clytia hemisphaericaexon
TCONS_00017957-exon-sc0000279-1510915933:169286..169812TCONS_00017957-exon-sc0000279-1510915933:169286..169812Clytia hemisphaericaexon
TCONS_00017957-exon-sc0000279-1575043694:169286..169812TCONS_00017957-exon-sc0000279-1575043694:169286..169812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:169286..169812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0456616	0	0	0	0.758304	0.102603	0.558778	0	0	0	0	0	0.67527	0	0	0	0	0	0	0	0	0	0.0400756	0.185703	1.12703	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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