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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017951 ID=TCONS_00017951|Name=TCONS_00017951|organism=Clytia hemisphaerica|type=transcript|length=1785bp
cCAAAttgtctcactggtccactatttacccaaaatatgtcactggtcca
ctatttacccaagttgtctcactggtccactatttacccaaaaagTCTCA
CTGGTCCttacccaaaatatctcactGGTCCATTATATACCCAAAatgtc
tcactggtccactatttacccaaaatgtctcactggtccactatttaccc
aaaatgtctcactggtccactatttacccaaaatatctcactGGTCTATC
GTTTACCCAAACtatgtcactggtccactatttacccaaattgtctcact
ggtccactatttacccaaaatatgtcactggtccactatttacccaaatt
gTCTCACTGGTCCATTATATACCCAAAatgtctcactggtccactattta
cctaaaatatgtcactggtccactatttacccaaaatgtctcactggtcc
actatttacccaaaatgtctcactggtccactatttacccaaaatatctc
actggtccactatttacccaaaatgtctcactggtccactatttacccaa
aatgtctcactggtccactatttacccaaaatatctcaatggtccactat
ttacccaaaatatgtcactggtccatcgtttacccaaaatatgtcactgg
tccactatttacccaaaatatgtcactggtccactatttacccaaaatat
aagcataTATCTAGGCGTAGGCCAAAAACTCTTGAACCTTTCCGAGCTTG
ATTTAAGGAGACTgattgtttgtaatttttatctCTAAGTAATTTGGGCC
AACACGCGGTGGCTTAGAATTGACTCAGAGGTTTTATTGCCCGTATACTC
ATACAAATACTTCGTGGAAAGGccaaaaaagttcgaaaatttgatgttta
aaaagagattttatAGTGGCGTTGAAGGTTTAATCGGAAAGAAATGGATT
AATCAAGCTTTAGCAAATAACAGTAATAATTATCTTTTTTGTTTAACAGA
AATCAAAAGAACAATGAAAAGTACAAACTGGGTTACCTATTTACATAAAC
TTATCCTTCTTAAGAACACACATCAGGAGGGATCACGACAcaattttgac
aaataaaaGCTCTCGATTTGTATGTTAGACATAACTGGATTTGATAGACG
GGGAGCTTTGAACAAATGTAGTGTACGATTCGATTGCACTTCTTATTTAT
GTTAcaataaaatttgttttgtgCTTTGCTGAGTTTGCAAGAAAGTGGAG
GGCCATGCTCCCGGTCCTGAATAGTCAAAATCATCCTTGCTTTTGTTCAA
TGAAAggaattaaaattaaatatttcttgataatttttgttaatttttat
ttgctCGGAAAGAAAGTTGGTTAGACAAGATTTTAAATATCACTTCTTTA
AAATGGGGTGAGAAAAGAGCCTGAAGTGTTTTGtaaaatcttaaataaaa
cGACAATAACTGAAAGGTGAGAAGGCGTGAGCGGTTTGTAATCTAAGGAG
GCCCCAACATGGTTTGGGCCGACGGACGAAGAAAATGGTCTCTAATTGTA
TTGCAGCGAAAGTCTATTATTAAAAGGTTTAGTATCAGGCCATAGGACCT
ATGGTATCATTTTTTACGATCCCGCTGAACGGTAAATTTTATGCCATCAC
GCCTCAACCTCGATCCCATGACCAttagcttttttatattgatagACGCT
AATGGATGTTTCTCGCTTCCATCAGATTACACGATCACGCCACGACTCAA
TTTAACGCCATCACGCCgaattctttgaattttca Run BLAST on NCBI protein sequence of TCONS_00017951-protein >TCONS_00017951-protein ID=TCONS_00017951-protein|Name=TCONS_00017951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
KLSHWSTIYPKYVTGPLFTQVVSLVHYLPKKSHWSLPKISHWSIIYPKCL
TGPLFTQNVSLVHYLPKMSHWSTIYPKYLTGLSFTQTMSLVHYLPKLSHW
STIYPKYVTGPLFTQIVSLVHYIPKMSHWSTIYLKYVTGPLFTQNVSLVH
YLPKMSHWSTIYPKYLTGPLFTQNVSLVHYLPKMSHWSTIYPKYLNGPLF
TQNMSLVHRLPKICHWSTIYPKYVTGPLFTQNISIYLGVGQKLLNLSELD
LRRLIVCNFYL Run BLAST on NCBI transcript from alignment at sc0000279:54658..56442 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017951 ID=TCONS_00017951|Name=TCONS_00017951|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at sc0000279:54658..56442 (Clytia hemisphaerica)
tgaaaattcaaagaattcGGCGTGATGGCGTTAAATTGAGTCGTGGCGTG
ATCGTGTAATCTGATGGAAGCGAGAAACATCCATTAGCGTctatcaatat
aaaaaagctaaTGGTCATGGGATCGAGGTTGAGGCGTGATGGCATAAAAT
TTACCGTTCAGCGGGATCGTAAAAAATGATACCATAGGTCCTATGGCCTG
ATACTAAACCTTTTAATAATAGACTTTCGCTGCAATACAATTAGAGACCA
TTTTCTTCGTCCGTCGGCCCAAACCATGTTGGGGCCTCCTTAGATTACAA
ACCGCTCACGCCTTCTCACCTTTCAGTTATTGTCgttttatttaagattt
taCAAAACACTTCAGGCTCTTTTCTCACCCCATTTTAAAGAAGTGATATT
TAAAATCTTGTCTAACCAACTTTCTTTCCGagcaaataaaaattaacaaa
aattatcaagaaatatttaattttaattccTTTCATTGAACAAAAGCAAG
GATGATTTTGACTATTCAGGACCGGGAGCATGGCCCTCCACTTTCTTGCA
AACTCAGCAAAGcacaaaacaaattttattgTAACATAAATAAGAAGTGC
AATCGAATCGTACACTACATTTGTTCAAAGCTCCCCGTCTATCAAATCCA
GTTATGTCTAACATACAAATCGAGAGCttttatttgtcaaaattgTGTCG
TGATCCCTCCTGATGTGTGTTCTTAAGAAGGATAAGTTTATGTAAATAGG
TAACCCAGTTTGTACTTTTCATTGTTCTTTTGATTTCTGTTAAACAAAAA
AGATAATTATTACTGTTATTTGCTAAAGCTTGATTAATCCATTTCTTTCC
GATTAAACCTTCAACGCCACTataaaatctctttttaaacatcaaatttt
cgaacttttttggCCTTTCCACGAAGTATTTGTATGAGTATACGGGCAAT
AAAACCTCTGAGTCAATTCTAAGCCACCGCGTGTTGGCCCAAATTACTTA
GagataaaaattacaaacaatcAGTCTCCTTAAATCAAGCTCGGAAAGGT
TCAAGAGTTTTTGGCCTACGCCTAGATAtatgcttatattttgggtaaat
agtggaccagtgacatattttgggtaaatagtggaccagtgacatatttt
gggtaaacgatggaccagtgacatattttgggtaaatagtggaccattga
gatattttgggtaaatagtggaccagtgagacattttgggtaaatagtgg
accagtgagacattttgggtaaatagtggaccagtgagatattttgggta
aatagtggaccagtgagacattttgggtaaatagtggaccagtgagacat
tttgggtaaatagtggaccagtgacatattttaggtaaatagtggaccag
tgagacatTTTGGGTATATAATGGACCAGTGAGAcaatttgggtaaatag
tggaccagtgacatattttgggtaaatagtggaccagtgagacaatttgg
gtaaatagtggaccagtgacataGTTTGGGTAAACGATAGACCagtgaga
tattttgggtaaatagtggaccagtgagacattttgggtaaatagtggac
cagtgagacattttgggtaaatagtggaccagtgagacatTTTGGGTATA
TAATGGACCagtgagatattttgggtaaGGACCAGTGAGActttttgggt
aaatagtggaccagtgagacaacttgggtaaatagtggaccagtgacata
ttttgggtaaatagtggaccagtgagacaaTTTGg Coding sequence (CDS) from alignment at sc0000279:54658..56442 >TCONS_00017951 ID=TCONS_00017951|Name=TCONS_00017951|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000279:54658..56442 (Clytia hemisphaerica)
TTAGagataaaaattacaaacaatcAGTCTCCTTAAATCAAGCTCGGAAA
GGTTCAAGAGTTTTTGGCCTACGCCTAGATAtatgcttatattttgggta
aatagtggaccagtgacatattttgggtaaatagtggaccagtgacatat
tttgggtaaacgatggaccagtgacatattttgggtaaatagtggaccat
tgagatattttgggtaaatagtggaccagtgagacattttgggtaaatag
tggaccagtgagacattttgggtaaatagtggaccagtgagatattttgg
gtaaatagtggaccagtgagacattttgggtaaatagtggaccagtgaga
cattttgggtaaatagtggaccagtgacatattttaggtaaatagtggac
cagtgagacatTTTGGGTATATAATGGACCAGTGAGAcaatttgggtaaa
tagtggaccagtgacatattttgggtaaatagtggaccagtgagacaatt
tgggtaaatagtggaccagtgacataGTTTGGGTAAACGATAGACCagtg
agatattttgggtaaatagtggaccagtgagacattttgggtaaatagtg
gaccagtgagacattttgggtaaatagtggaccagtgagacatTTTGGGT
ATATAATGGACCagtgagatattttgggtaaGGACCAGTGAGActttttg
ggtaaatagtggaccagtgagacaacttgggtaaatagtggaccagtgac
atattttgggtaaatagtggaccagtgagacaaTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017951-exon-sc0000279-1491911889:54658..56442 | TCONS_00017951-exon-sc0000279-1491911889:54658..56442 | Clytia hemisphaerica | exon |
| TCONS_00017951-exon-sc0000279-1510915933:54658..56442 | TCONS_00017951-exon-sc0000279-1510915933:54658..56442 | Clytia hemisphaerica | exon |
| TCONS_00017951-exon-sc0000279-1575043694:54658..56442 | TCONS_00017951-exon-sc0000279-1575043694:54658..56442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:54658..56442 . |
Blast
The following BLAST results are available for this feature:
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