TCONS_00017945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017945
Unique NameTCONS_00017945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017945 ID=TCONS_00017945|Name=TCONS_00017945|organism=Clytia hemisphaerica|type=transcript|length=1404bp
caaacactggTTCAAAGCTGGCGAAGAACAGTAAAATGGCGCTAACAGGA
AGTCAAATCTTCATATTCATCTGCATACAATGGTTTGCGTATACATCAGC
CACTGGTAATGAAACAGTAGATGTCTTAGTTGACCGATCAATTTCCAATC
TCCAGAAAATCAAACTGACCTACAAACTGAAGTTAAAATCGATAGCTCTC
ATAAAGAAATTATACGGACATTGTGCTCCTTGTAAGTTGATCCCTAAGAG
CGAATACTGCGACTGTACATTTGCTGACCCTATGAAAGATTGTCTGGAGT
TTCGACAAGCTGGCAATCAAGTTAATCGCTTTTATCAGCTGGTGGGGCCT
GTATTTAACAGACCACGAGTGTTCTGTGATCAAGCTACCCAAGGTGGAGG
ATGGACGGTATATCTCAGAAGAGAAGGCGGATCCTTAGACTTTAAACAGA
ACTGGAATAACTACAAATATGGTTTTGGAGAGTTAGCCAATGAATTCTAA
CTTGGAAATGAAATAGTCCATGATTTGACCAAAGAATCGATGGCACCGAA
TAAATCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACAAAACCAG
TTTATGCAAAATACGACACTTTTGAAATTGGAGATGAGGCGAGCAAATAC
ACATTGAAGATCAGCGGTGTGTCAGGCGATGCCAATGATTTGACTGCCCT
TAGTTACCATAACAATACGAAATTTTCAACGTATGATCAAGATAATGACA
ATTCTGGAGGGGATTGTTCAAATAACTGGGAAGGAACTGGGTGGTGGTTT
AATAATTGCTTGGAAACACTTTTAACTGCTATTCTTTCTGACGGTAATGC
GTATTGGACTATTCCTGGCATAGCAACTTTTGTAGAAATGAAATTTAGAC
GCAATGTCTGATGATAATCTAACTTGAGTATATTTAAAACTCTCTCTgaa
agaaacaaataaaattcattGTTTTACGACATGAGGCCGCAACATGagtt
tcagtttgagtttacCAATTTCGCACAACGAACANgtgttataatgttat
tggaatttgataaagtttacaaaagtacagctactgtctaaatttgataa
agactggatgcaatcgtgcttttttggacttgttggtggtttggacgtgt
ttgataaggcgaatcgcaaaaaattgtttggttcccgtcatttctacttt
aaaaagtgggggtaaTTCGGTCGgtcagtcgaaaatatttttcttttaag
aagcagctaccgtaacttggtctaatgtcgacatccctcctctaattccg
acaccctttttatcagctgaaattgatagaaaggctgaaactgtttttct
ttgcttagtggtcagagaggaataatcctttttcaatcagtgattcaagc
tttc
Run BLAST on NCBI

transcript from alignment at sc0000279:327871..333200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017945 ID=TCONS_00017945|Name=TCONS_00017945|organism=Clytia hemisphaerica|type=transcript|length=5330bp|location=Sequence derived from alignment at sc0000279:327871..333200- (Clytia hemisphaerica)
CAAACACTGGTTCAAAGCTGGCGAAGAACAGTAAAATGGCGCTAACAGGA
AGTCAAATCTTCATATTCATCTGCATACAATGGTTTGCGTATACATCAGC
CACTGGCAATGAAACAGTAGATGTCTTGATTGACCAATCAATTTCCAATC
TCCAGAAAATCAAACTAAAGATGAAGTTACTTTCCCTGCTCAAAAAGATG
TATGGTGATTGCTTGCCATGTAGATCAATCTTTAATAGCAAAAGCTGTGA
TTGTACAGCCATCACACCGATGAAAGATTGTCTGGAGTTTTTACAGAACG
GCTACACCAAGAATGGAATCTACAAAGTAACACAGAAAGAAAACGTCTAC
TGCGATCAAACCACTCAAAATGGTGGCTGGACAGTTTTCTTAAGGAGACA
AGATGGATCAACAGACTTCAAACAGAACTGGCTGGACTACAAATATGGTT
TTGGTAAGCTGACCAGTGAATTTTGGCTTGGAAATGAAATGGTCCATGAT
TTGACCAAACCATCAGTGGCTCCAAAGAAGTCAGAGCTGTTGATCAACAT
GCGAATGAAAGGACAAACCAAACTAGTTTTCGCCAAATACGACACTTTTG
AAATTGGAGATGAGGTGAGCAAATACACATTGAAGATCAGTGGTGTATCA
GGCGATGCATCTCATTTAACTGGATCAAGTTCTTTTCTTGGTTATCATAA
CAACATGAAGTTTTCAACGTATGATCAGGATAATGACAAGTATTCTGGCC
ATTGTTCGTCTAGATACAGAGTTGGTTGGTGGTTCAAAAGTTGTTATAAC
ACGCTTTTGACTGGTAATTACAAATTTACAAAGGATAACGGTAATATCTA
TTGGGTTGGTAGTAACCAACCCGAANCTGGTAATTACAAATTCACGGGAC
ACAGCAATGGCGAGATCTCTTGGAATAATAATCCCGGTGATGTCGAACCC
AAGTTTGTCCAAATGATGATGCGCCGTAAGCTCTAATCATTAAAAAGTAA
GTTCATTTTATAGATTACGAGATGATTTCAAAATCTTTTAAATCAAAATA
AGAAAAGAATTTTTAATAAAAACTTCAACCACAGCGTCAACATTCGGATT
TTTGACATCGCACACGTAACAAAATTCTTCTTATGACTTGATTTTTTTCC
TCTGATGGTTCAATTTGAAGCAACTTCAAAAATTTACCGTGCACTTTAGA
AAATTGTGGCCATTTGTTATCAGGTTATTTAAAAATTTGTTTTGCTAAAT
AGGTTTTTTGGGCTATTTTTTGATTGGGTCAATCCTAAAATTTCCTCTGT
TGGATTCTCTATCCCTAAATCCACCTTAATTTTGATAACATCATCGGACG
TTCAGAAAATCGGACAGTTTCAATACATATATAACTTGTAAAATTACTCT
TTTTTTCAGAACAACCTCAAAATCGTGGACGCGAAGCAATGAAAACATTG
ATAAAGAAGTTCAAACGATCAGATGAGAATCAATACAATCATATTTTAAT
CTAATTTTCTAAGAAATTGTATGTTTCAAACTCTGAAAAAACTTGAATGT
TCTTAAAATGTTCTTAAATTTATAGCTTAGATATCGTATGTTCTTATTAT
ATAATCATATTGTTTTTTTTCGTTCTTTCGGTTAAATTTTTTTTGCAAGA
ACGTCTGAAGATTTTGAAACCTTCAGACCGTGGGTTTTAAGTCTAAAAAA
TGTTCGTAGTATGCTCCTATTTTTAGTCCAATTTTCTAAAAAAAAATTGG
ATGTTTTAGAATATGAAAAAACTTTCACGTTGTTTCTAGAATTTTCTTAA
TTCTACCTAAGGTACTAGCCTTTGCAGGACCTTAACCCTAAGAATCAACT
TATTAAGTGACTTTGCTTGGAGACTTGCGTTATCTTGCACGACCAAGGAG
ACCTATTTTGAATTGTTAGATTACAAGTGTAATGAAAGCGCATAGAAATA
AAGCATGTGCACGTCTGACGTTTCGGAAAAGTAAGACTTGAAAGTCAGTC
AATTTACGAAATTTACCACAGTGAAGACCTAGACGAATTGTTTAGATCTA
ACAATGCATGCACGTCAGACGCTTCGGAAATGTTGGACGTGAAAGTCCGT
CAATTTCGAATTTGACGGTAGTGAAAACCTGACGATTTCAGGTCTACATA
CATTGCGATACTTGCCCATTTTTTTATAGATTAGGGGTTGTCATTATAAA
ATATAACTATCGGCATCATCGATGCTACCGGTTTTCAAATGAATCTCTTT
ACAAAAATGTCTAACTAAATTTTGAACATTGCCATTTATGTTGACGATAA
GTTTATATACGGTTGACCCAAAGCTAATACCACGATATTTTCTCGGATAT
TTCGAAAATCTCTCTTAGACCCGTTATTTCAGTAAAAAAAATTTGGATAT
CGTTATTTTGAATCAGTTTGTAAAAAATTAGAAAAACCCAATGACCTAAT
CCCTAAAAAAAATCGTAACAGACCTAACAGAACGAACAGATAGGCGAACG
AAAGAACGAAAAACGGTTATGATTTGTAGGACCTTAAAGCCAAAAGTTAT
AATTAAGATTTTAGCGAATAAGACTATTTTACTCAGTAGATCATAAGTTT
TCCTTTTTATTCAAATTCAGTGACTAAAGCTAAATAAAAAGAGGCACACC
ACGTAATCCTTGCTCAACAAAAGTTTGCTAAACGGTAGCGTTTTTATGGG
TTGATTCACAACCTTTATAACATAAACTTTTCAGGGATAAAGGAACTGTT
TCGCAAAGAAAGGCTCCAAAGTTTGTCTCAAATGTCTCAATATGTAGACA
CTTTACTTTTTTTTGATAATTTCTCAGCACCCATTAATGCTATGTTAAAA
CAAACTAGATACTCTGAATGGACATACCTAATGATGAAAGTTAGATAGCA
ATAAGGAGAAAAACGAAAACAATCAGTCAGAAAATATAGCGTTTAGCGAA
AATGCATAGCGCATTAAATTTCATCATTGATTGTTGACAGGGGAAAGGGA
AGGGGAGTGTGTTAATTTAAAGGACCTTCGAGGTAGGTTCAAAAAGCTAT
ACACCGTTGGAATGATAATTTCCAGGAGAATTATCAAATATTATTGAAAA
TTTCCGTTGAATCGAAAATTGAAGATGAAAAACTTAAGATTCAAAAATAG
TGACAACAACAAGCTGAAAACAGATTTGAAATCGGCGAAGTTCAAATATT
CTAAAAAGTATATTATGTCATGAAACCAGTAGTTTCATCTGTATTTTTCG
TCTCCAATTTTCAATATATTTGATAGTTCTCCTTGAGAATATCTTTCCAA
CAGTGTATAACCTCTTATCATACCATAAATCATGTATCATAACAAACTTG
CAGGACTTTAATATGGATTTCTAAAACTTCACAATTGTTTCAATTGTTTC
AAGATCCAGTGAGATGATGAGTTTTGAGGGTTTTACTTTATACAAAATTT
GTTCACAACTCATTCACCAAACGATAATACTTCTTTATCTAATTCCTTAT
GATGACTTTATTTCGCCGCAGAATCAACCATTTGGGTTTCAGTTCTGTTG
TGACTCAATGTTTTAAAAAGTTTGTTAGAAAAGAAGAGAAATTACACTAA
TGTAGATGTTCATTTATGAGATTGGCTAAATTCTAAGACCACGCTACATG
GAGATTTTTACCGTTTAATTTGCGGCTAAAATTTAATTCGAATGCATCTT
TGTCATTGGTAAAATGCCAATTTTTTTGTTCTTTCTTTGGCACTGTGTAC
AAATGACAAAGACAAAGCATTCCAATTAAACTGTAGCCGCAAATTAAACG
GCAAAAGTTTTTGAAACGTTCCAAACCAACATTATTGTTTGGAGCAATAA
GGCAAACGAAACTCGATACGTCAAGAAATTCATAAACCTACATGTATAAA
AAGACCACTAAATTTCAACAAAACACCTAACACTGGTTCAAAGCTGGCGA
AGGACAGTAAAATGGCGCTAACAGGAAGTCAAATCTTCATATTCATCTGC
ATACAATGGTTTGCGTATACATCAGCCACTGGTAATGAAACAGTAGATGT
CTTAGTTGACCGATCAATTTCCAATCTCCAGAAAATCAAACTGACCTACA
AACTGAAGTTAAAATCGATAGCTCTCATAAAGAAATTATACGGACATTGT
GCTCCTTGTAAGTTGATCCCTAAGAGCGAATACTGCGACTGTACATTTGC
TGACCCTATGAAAGATTGTCTGGAGTTTCGACAAGCTGGCAATCAAGTTA
ATCGCTTTTATCAGCTGGTGGGGCCTGTATTTAACAGACCACGAGTGTTC
TGTGATCAAGCTACCCAAGGTGGAGGATGGACGGTATATCTCAGAAGAGA
AGGCGGATCCTTAGACTTTAAACAGAACTGGAATAACTACAAATATGGTT
TTGGAGAGTTAGCCAATGAATTCTAACTTGGAAATGAAATAGTCCATGAT
TTGACCAAAGAATCGATGGCACCGAATAAATCAGAGCTGTTGATCAACAT
GCGAATGAAAGGACAAACAAAACCAGTTTATGCAAAATACGACACTTTTG
AAATTGGAGATGAGGCGAGCAAATACACATTGAAGATCAGCGGTGTGTCA
GGCGATGCCAATGATTTGACTGCCCTTAGTTACCATAACAATACGAAATT
TTCAACGTATGATCAAGATAATGACAATTCTGGAGGGGATTGTTCAAATA
ACTGGGAAGGAACTGGGTGGTGGTTTAATAATTGCTTGGAAACACTTTTA
ACTGCTATTCTTTCTGACGGTAATGCGTATTGGACTATTCCTGGCATAGC
AACTTTTGTAGAAATGAAATTTAGACGCAATGTCTGATGATAATCTAACT
TGAGTATATTTAAAACTCTCTCTGAAAGAAACAAATAAAATTCATTGTTT
TACGACATGAGGCCGCAACATGAGTTTCAGTTTGAGTTTACCAATTTCGC
ACAACGAACANGTGTTATAATGTTATTGGAATTTGATAAAGTTTACAAAA
GTACAGCTACTGTCTAAATTTGATAAAGACTGGATGCAATCGTGCTTTTT
TGGACTTGTTGGTGGTTTGGACGTGTTTGATAAGGCGAATCGCAAAAAAT
TGTTTGGTTCCCGTCATTTCTACTTTAAAAAGTGGGGGTAATTCGGTCGG
TCAGTCGAAAATATTTTTCTTTTAAGAAGCAGCTACCGTAACTTGGTCTA
ATGTCGACATCCCTCCTCTAATTCCGACACCCTTTTTATCAGCTGAAATT
GATAGAAAGGCTGAAACTGTTTTTCTTTGCTTAGTGGTCAGAGAGGAATA
ATCCTTTTTCAATCAGTGATTCAAGCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010058XLOC_010058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017945-exon-sc0000279-1575043694:333107..333200TCONS_00017945-exon-sc0000279-1575043694:333107..333200Clytia hemisphaericaexon
TCONS_00017945-exon-sc0000279-1575043694:327871..329180TCONS_00017945-exon-sc0000279-1575043694:327871..329180Clytia hemisphaericaexon
TCONS_00017945-exon-sc0000279-1510915933:333107..333200TCONS_00017945-exon-sc0000279-1510915933:333107..333200Clytia hemisphaericaexon
TCONS_00017945-exon-sc0000279-1510915933:327871..329180TCONS_00017945-exon-sc0000279-1510915933:327871..329180Clytia hemisphaericaexon
TCONS_00017945-exon-sc0000279-1491911889:333107..333200TCONS_00017945-exon-sc0000279-1491911889:333107..333200Clytia hemisphaericaexon
TCONS_00017945-exon-sc0000279-1491911889:327871..329180TCONS_00017945-exon-sc0000279-1491911889:327871..329180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:327871..333200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28955	2.1024	3.41118	2.66657	5.08686	5.0291	5.00871	4.62277	0	3.143	2.04576	1.34016	3.66735	2.41673	15.2626	17.4686	6.37172	7.35344	6.62495	7.42923	6.15084	6.43841	14.8802	13.219	8.85222	9.20209	1.85823	1.57819	52.8047	64.71
Blast
[Close]
BLAST of TCONS_00017945 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.438e-26
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3 
Query:  285 KDCLEFRQAGNQVNRFYQLVGPVFNRPR-VFCDQATQGGGWTVYLRREGGSLDFKQNWNNYKYGFGELANEF*LGNEIVHDLTKESMAPNKSELLINMRMKGQTKPVYAKYDTFEIGDEASKYTLKISGVSGDANDLTALSYHNNTKFSTYXXXXXXXXXXXXXXWEGTGWWFNNC 809
            +DC E +++G   +  Y +      +PR VFCD  + GG WT+  RRE G+++F++NW +YK GFG+ A E  LGNE+VH LT+ +    + EL        +    YA+Y+ F +G E   Y L + G SG A   ++L    NT FST D DND+    C+    G GWWF+ C
Sbjct:  289 QDCAEIQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRRENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLTRRAAYSLRVEL-----QDWEGHEAYAQYEHFHLGSENQLYRLSVVGYSGSAGRQSSLVLQ-NTSFSTLDSDNDHCLCKCAQVMSG-GWWFDAC 457
The following BLAST results are available for this feature:
BLAST of TCONS_00017945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP43.438e-2638.64Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1[more]
back to top