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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017918 ID=TCONS_00017918|Name=TCONS_00017918|organism=Clytia hemisphaerica|type=transcript|length=1201bp
CTTCTCCTGGTAATCACCGTCATTTCCACGGTAGAATCAAGCCGTTGCGG
GCACTACCCTAGATACCCGCAAGATTTCCGTTTCAGTTATCGTGGGATTG
TCAATGGATGGACATGTATACGGATCATTGAACCATCGGATCCGATATGG
AAAAACGGGAATAATTATTTCTGTCATAAAGCAGGCCCTCAATTTCGCGG
AGTAGGGATGAGGTGGTCATACGCAGGTGCTATCCGTGGTATGAAATGTT
TTCGTGTTTTCGAACCATCCGAACCGAAACATTATCACTGGCGTGATAAT
TATATCTGTGTACCAGCCAACTCACCTTACAATCTCAAATTCTATAATTC
TAACCCAAAATATGCAAGATGTCGTTGTGTTCAATGGCTGAAACCATCAG
ATCCTCACACGTGGAAAGATAACTGGCTCTGTACTGCTAAATAATAAAAG
AACGATTGATACTCAATCTCTTCAATACATTTCTTCACTAATTCATTGTA
ATCTATAAATTACTACCGGAATCAGAAGTCGTCCTTTCTTAAACgttgtt
ttttattagaacaaactatataagaacataaggcttcgatgaccaaaata
ttaagaacaagtttcaagaacattttaaggctttttgaactCAAACACTT
aggaaaattggtaaaaatggtgaaaataagaacattttaagaacattttt
aggctggaaacccaaaaagttaaaaacatcccaaggctttaaaaactttg
gatgttcttataaaaaattgagcATTGGGTTGTTGTgatgggaaaaatca
aaatgagaCACTTTTTGGGCGAATTCGCAGTTTAAAGCTGCAATTTTAAT
TGATCTTTTGGAAATGGCAGCTTTTGGGTGAAGTAACATCGAATGTTTTA
CTCTTTTTCTTAAATTGGGTCAttccagaaagaaatttttctccctatgt
tgaggaggtcttttttggGAAAGAAGAGGGGGAGGACCACCCTGGATTCT
TGATCCCGTTTTACTGACCGCCCTGGATTTTCCACTTCATTTTAACTGTA
CACactggatttttacactcgaaaaaccagGCCATTTCTTTTTGATCGTa
ctaatttttgtatttttgcgaagcgaatatacatgagcgaagcagttttg
ctatcgtgtatatgtacctttaaatctcacctacgctggggagcgcaaat
g Run BLAST on NCBI protein sequence of TCONS_00017918-protein >TCONS_00017918-protein ID=TCONS_00017918-protein|Name=TCONS_00017918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
LLLVITVISTVESSRCGHYPRYPQDFRFSYRGIVNGWTCIRIIEPSDPIW
KNGNNYFCHKAGPQFRGVGMRWSYAGAIRGMKCFRVFEPSEPKHYHWRDN
YICVPANSPYNLKFYNSNPKYARCRCVQWLKPSDPHTWKDNWLCTAK Run BLAST on NCBI transcript from alignment at sc0000279:249046..250786+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017918 ID=TCONS_00017918|Name=TCONS_00017918|organism=Clytia hemisphaerica|type=transcript|length=1741bp|location=Sequence derived from alignment at sc0000279:249046..250786+ (Clytia hemisphaerica)
CTTCTCCTGGTAATCACCGTCATTTCCACGGTAGAATCAAGCCGTTGCGG
GCACTACCCTAGATACCCGCAAGATTTCCGTTTCAGTTATCGTGGGATTG
TCAATGGATGGACATGTATACGGATCATTGAACCATCGGATCCGATATGG
AAAAACGGGAATAATTATTTCTGTCATAAAGCAGGCCCTCAATTTCGCGG
AGTAGGGATGAGGTGGTCATACGCAGGtaagattttatattttgtagTTT
ATCATCTTCAGTGATGtatctataactcgaacacgcacggggaacacaaa
tttggaCCATAACTCGAGTAAGGTTTATTAGGCATTGtcaacaataataa
taaaagagacttgttcgagttaagaagacaccccagttatagaggttcaa
gtCAAAGAGACTCCGTTGTATATCGTTTAACATCTGTCTTAATACAGAAG
TTTTCTATATAGAGGTAAAGGTAGTTgagttcgaatgtttttttgtcCTA
TTGGATGGAATAAGTATTATATGAAATAATCCTAACTTTCTCGAAATTTA
ATTAAGTTGCCCAACTTTTTTAGAGGACTTTGTTTAGTTTGGGGATAAAG
AAAAATGTTCGAGTTTggaaagttttcaaaagtttctaagCTTCCGAACT
ccaatgtcttcatttaaagttttttttatcgatgaataatttccaatttt
tagAGTGTGTGCCTTAACTAAGAATTTTATTGACTTCatatgatttcatt
ttttttttatcctCAGGTGCTATCCGTGGTATGAAATGTTTTCGTGTTTT
CGAACCATCCGAACCGAAACATTATCACTGGCGTGATAATTATATCTGTG
TACCAGCCAACTCACCTTACAATCTCAAATTCTATAATTCTAACCCAAAA
TATGCAAGATGTCGTTGTGTTCAATGGCTGAAACCATCAGATCCTCACAC
GTGGAAAGATAACTGGCTCTGTACTGCTAAATAATAAAAGAACGATTGAT
ACTCAATCTCTTCAATACATTTCTTCACTAATTCATTGTAATCTATAAAT
TACTACCGGAATCAGAAGTCGTCCTTTCTTAAACgttgttttttattaga
acaaactatataagaacataaggcttcgatgaccaaaatattaagaacaa
gtttcaagaacattttaaggctttttgaactCAAACACTTaggaaaattg
gtaaaaatggtgaaaataagaacattttaagaacatttttaggctggaaa
cccaaaaagttaaaaacatcccaaggctttaaaaactttggatgttctta
taaaaaattgagcATTGGGTTGTTGTgatgggaaaaatcaaaatgagaCA
CTTTTTGGGCGAATTCGCAGTTTAAAGCTGCAATTTTAATTGATCTTTTG
GAAATGGCAGCTTTTGGGTGAAGTAACATCGAATGTTTTACTCTTTTTCT
TAAATTGGGTCAttccagaaagaaatttttctccctatgttgaggaggtc
ttttttggGAAAGAAGAGGGGGAGGACCACCCTGGATTCTTGATCCCGTT
TTACTGACCGCCCTGGATTTTCCACTTCATTTTAACTGTACACactggat
ttttacactcgaaaaaccagGCCATTTCTTTTTGATCGTactaatttttg
tatttttgcgaagcgaatatacatgagcgaagcagttttgctatcgtgta
tatgtacctttaaatctcacctacgctggggagcgcaaatg Coding sequence (CDS) from alignment at sc0000279:249046..250786+ >TCONS_00017918 ID=TCONS_00017918|Name=TCONS_00017918|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000279:249046..250786+ (Clytia hemisphaerica)
CTTCTCCTGGTAATCACCGTCATTTCCACGGTAGAATCAAGCCGTTGCGG
GCACTACCCTAGATACCCGCAAGATTTCCGTTTCAGTTATCGTGGGATTG
TCAATGGATGGACATGTATACGGATCATTGAACCATCGGATCCGATATGG
AAAAACGGGAATAATTATTTCTGTCATAAAGCAGGCCCTCAATTTCGCGG
AGTAGGGATGAGGTGGTCATACGCAGGTGCTATCCGTGGTATGAAATGTT
TTCGTGTTTTCGAACCATCCGAACCGAAACATTATCACTGGCGTGATAAT
TATATCTGTGTACCAGCCAACTCACCTTACAATCTCAAATTCTATAATTC
TAACCCAAAATATGCAAGATGTCGTTGTGTTCAATGGCTGAAACCATCAG
ATCCTCACACGTGGAAAGATAACTGGCTCTGTACTGCTAAATAACTTCTC
CTGGTAATCACCGTCATTTCCACGGTAGAATCAAGCCGTTGCGGGCACTA
CCCTAGATACCCGCAAGATTTCCGTTTCAGTTATCGTGGGATTGTCAATG
GATGGACATGTATACGGATCATTGAACCATCGGATCCGATATGGAAAAAC
GGGAATAATTATTTCTGTCATAAAGCAGGCCCTCAATTTCGCGGAGTAGG
GATGAGGTGGTCATACGCAGGTGCTATCCGTGGTATGAAATGTTTTCGTG
TTTTCGAACCATCCGAACCGAAACATTATCACTGGCGTGATAATTATATC
TGTGTACCAGCCAACTCACCTTACAATCTCAAATTCTATAATTCTAACCC
AAAATATGCAAGATGTCGTTGTGTTCAATGGCTGAAACCATCAGATCCTC
ACACGTGGAAAGATAACTGGCTCTGTACTGCTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017918-exon-sc0000279-1491911889:249046..249271 | TCONS_00017918-exon-sc0000279-1491911889:249046..249271 | Clytia hemisphaerica | exon |
| TCONS_00017918-exon-sc0000279-1510915933:249046..249271 | TCONS_00017918-exon-sc0000279-1510915933:249046..249271 | Clytia hemisphaerica | exon |
| TCONS_00017918-exon-sc0000279-1575043694:249046..249271 | TCONS_00017918-exon-sc0000279-1575043694:249046..249271 | Clytia hemisphaerica | exon |
| TCONS_00017918-exon-sc0000279-1491911889:249812..250786 | TCONS_00017918-exon-sc0000279-1491911889:249812..250786 | Clytia hemisphaerica | exon |
| TCONS_00017918-exon-sc0000279-1510915933:249812..250786 | TCONS_00017918-exon-sc0000279-1510915933:249812..250786 | Clytia hemisphaerica | exon |
| TCONS_00017918-exon-sc0000279-1575043694:249812..250786 | TCONS_00017918-exon-sc0000279-1575043694:249812..250786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:249046..250786 + |
Blast
The following BLAST results are available for this feature:
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