TCONS_00017907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017907
Unique NameTCONS_00017907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017907 ID=TCONS_00017907|Name=TCONS_00017907|organism=Clytia hemisphaerica|type=transcript|length=1175bp
agAAAACAGAAAGTTAATAAGAAACATGGCCTCACTCACTGAACGAATAG
CACTACACGATGGAAACACTATGCCACTTTTTGGCTTAGGATGTTGGGCC
ATGGATGAAGAACCAACCTACAATGCTGTCCTAACAGCCTTGAATAAAGG
TTACAAATTAATCGATACCGCACACTGTTATAAAAATGAGCAATCGGTTG
GCAAGGCGATTAAAGATTCTGGACTTTccagaaatgatttttttcttgtc
aCAAAGTTGGATCCGCATCAGCATGGAGCTGAAGGAGTCAAACAAAGCTT
GAAAGAAAGTCTTGATAAACTGGGTTTGGAATATGTTGACTTGTTTTTGA
TTCATACTCCGATGTCTGGAAAAGTCTTGGAAACATGGAAAGCTATGATG
GAAATAAAGAAAGAGGGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAA
TGGAGAACATATTCAAGCACTCTTGGATGCTGGACTTGAGAAACCTGCTG
TCAATCAATTCGAAATTCATCCCACAAATAGACAGAATGAAACTGTCGAT
TATTGCAGATCACAAAATATTGCAGTAATGGGTTACTGCCCTTTAGCTCG
TGCTCGTTTGTTCGGGAAATATCCAGTCTTCGGGGAGCTCTCTGCAAAAC
TGAAGAAAACAGAAGCTCAAATATTTCTACGCTGGGCTTTGCAAAAGCGC
TTCATCACAATACCAAAGTCAGCAAATGCGTCCAGAATACAGGAAAACTG
CGATTtatatgattttgaaatttcccaagAAGATATGACCAGTATTGAGC
AGCTGGTTGATGGTGAGCAAATCTCAATGGCGGCGGGCGCTTTGAAGCAT
TCATGGGCGGAGATCAAAGAACGAGATGTCCCAGGTGGATGGTAAATTGT
TCAACGCCCTCTCAAACATTTTATAATGCATATTTTCATCACACATAGTT
TTGTAAACGAAATTTATACTTTTGTTTTATTAATGACATAGAATCGTAGT
GTCTTTTCGAGGTCttcctttaaaggttttgtttttaaatgagagTGATA
TAGTTTGCTTACTCaccaattttaattcacaagctttttcacattagatt
gacacggatgtggagcaagattggtcagaaagaggaaaagaaaaacactt
tttgcttatatcagcacaataaaAC
Run BLAST on NCBI

protein sequence of TCONS_00017907-protein

>TCONS_00017907-protein ID=TCONS_00017907-protein|Name=TCONS_00017907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
ENRKLIRNMASLTERIALHDGNTMPLFGLGCWAMDEEPTYNAVLTALNKG
YKLIDTAHCYKNEQSVGKAIKDSGLSRNDFFLVTKLDPHQHGAEGVKQSL
KESLDKLGLEYVDLFLIHTPMSGKVLETWKAMMEIKKEGKAKSIGVSNFN
GEHIQALLDAGLEKPAVNQFEIHPTNRQNETVDYCRSQNIAVMGYCPLAR
ARLFGKYPVFGELSAKLKKTEAQIFLRWALQKRFITIPKSANASRIQENC
DLYDFEISQEDMTSIEQLVDGEQISMAAGALKHSWAEIKERDVPGGW
Run BLAST on NCBI

transcript from alignment at sc0000279:82693..85094+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017907 ID=TCONS_00017907|Name=TCONS_00017907|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000279:82693..85094+ (Clytia hemisphaerica)
agAAAACAGAAAGTTAATAAGAAACATGGCCTCACTCACTGAACGAATAG
CACTACACGATGGAAACACTATGCCACTTTTTGGCTTAGGATGTTGGGCC
ATGGATGAAGAACCAACCTACAATGCTGTCCTAACAGCCTTGAATAAAGG
TTACAAATTAATCGATACCGCACACTGTTATAAAAATGAGCAATCGGTTG
GCAAGGCGATTAAAGATTCTGGACTTTccagaaatgatttttttcttgtc
aCAAAGTTGGATCCGCATCAGCATGGAGCTGAAGGAGTCAAACAAAGCTT
GAAAGAAAGTCTTGATAAACTGGGTTTGGAATATGTTGACTTGTTTTTGA
TTCATACTCCGATGTCTGGAAAAGTCTTGGAAACATGGAAAGCTATGATG
GAAATAAAGAAAGAGGGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAA
TGGAGAACATATTCAAGCACTCTTGGATGCTGGACTTGAGAAACCTGCTG
TCAATCAATTCGAAATTCATCCCACAAATAGACAGGTTATTTTATTACTC
AGTTTTCATCATTATTTGTTAACTATTTAGCTTTCTTATGTGTGTTTTCG
tataatgttttctttttaaatgttttgcgATATTTACGAGAATAAGATAT
TAAAATCTACTGTCCTGTtgttcacgtttttttataagaaaaaactatat
aagaacataaggcttcgatggtcaaaatgttaagagcaaattaagaacat
tttaaggcatcATGGGCGCTACAAcatacaaaaatactcacaaaatggcg
aaattaagaacgaatttaaaaacattttcaggcttaaaactcaaaaagtt
aagaacatccaaaggcttcaaaatttttgaaacgtgTTTTATGTTTCCAT
ATATAATAAACCAGAATAAACCTGGATGAGAATCCTTTAATAATATATAT
ATGTTTTTTAACAAATGTCTCATTTTaaagtcttcggatgttcttgattt
tttttagtttgaagccctaaaaaaattttgttgaagtatccttattttca
ctattttgtgggtattttgtgccatttcctaaaaaattgagtgttttaaa
tgcttaaaaaagccgtaTAGGCCATGGCCAGTGCCaccaaaacgtttcac
tttttttcaaaatgtccgtgACCAagcttttaaaattgattttggtcaat
ttgagggtgctgaatccaaatttgaatgttaccaagcttttccaggcaaa
aaaggtcaaaaaagatgtttaattttgcataaattatgcagattgttggg
gaaattccctgttttccatcagtttttgaccacaaaaacgcccataactt
ttgatctagagagttgagactttgatgtaatacatttttttgctcggtct
gaagagctctatcacgttgTATAGGTcttgttttaattttaagacccccc
aaaaatcatgataaTTAaagccttgcaattttgcctggagaCGCAAAAAG
TCGCAAtttacgcaaaaactgcgggttttcacgcttggtaacattcaaat
ttgggttcagcaccctcaaattgaccaaaatcaatTGCCAAAGCTTGGTc
acagacattttgaattttttctttatttttgaacatttaaccatccactg
gccacggcctagtataatgttcttataattCTTGATAATTTGGCCATCAg
tgccttatgttcttacatagtttgttatCACAAAATTAACTGGTTTCTCT
ATCTTTCCACAGAATGAAACTGTCGATTATTGCAGATCACAAAATATTGC
AGTAATGGGTTACTGCCCTTTAGCTCGTGCTCGTTTGTTCGGGAAATATC
CAGTCTTCGGGGAGCTCTCTGCAAAACTGAAGAAAACAGAAGCTCAAATA
TTTCTACGCTGGGCTTTGCAAAAGCGCTTCATCACAATACCAAAGTCAGC
AAATGCGTCCAGAATACAGGAAAACTGCGATTtatatgattttgaaattt
cccaagAAGATATGACCAGTATTGAGCAGCTGGTTGATGGTGAGCAAATC
TCAATGGCGGCGGGCGCTTTGAAGCATTCATGGGCGGAGATCAAAGAACG
AGATGTCCCAGGTGGATGGTAAATTGTTCAACGCCCTCTCAAACATTTTA
TAATGCATATTTTCATCACACATAGTTTTGTAAACGAAATTTATACTTTT
GTTTTATTAATGACATAGAATCGTAGTGTCTTTTCGAGGTCttcctttaa
aggttttgtttttaaatgagagTGATATAGTTTGCTTACTCaccaatttt
aattcacaagctttttcacattagattgacacggatgtggagcaagattg
gtcagaaagaggaaaagaaaaacactttttgcttatatcagcacaataaa
AC

Coding sequence (CDS) from alignment at sc0000279:82693..85094+

>TCONS_00017907 ID=TCONS_00017907|Name=TCONS_00017907|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000279:82693..85094+ (Clytia hemisphaerica)
gAAAACAGAAAGTTAATAAGAAACATGGCCTCACTCACTGAACGAATAGC
ACTACACGATGGAAACACTATGCCACTTTTTGGCTTAGGATGTTGGGCCA
TGGATGAAGAACCAACCTACAATGCTGTCCTAACAGCCTTGAATAAAGGT
TACAAATTAATCGATACCGCACACTGTTATAAAAATGAGCAATCGGTTGG
CAAGGCGATTAAAGATTCTGGACTTTccagaaatgatttttttcttgtca
CAAAGTTGGATCCGCATCAGCATGGAGCTGAAGGAGTCAAACAAAGCTTG
AAAGAAAGTCTTGATAAACTGGGTTTGGAATATGTTGACTTGTTTTTGAT
TCATACTCCGATGTCTGGAAAAGTCTTGGAAACATGGAAAGCTATGATGG
AAATAAAGAAAGAGGGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAAT
GGAGAACATATTCAAGCACTCTTGGATGCTGGACTTGAGAAACCTGCTGT
CAATCAATTCGAAATTCATCCCACAAATAGACAGAATGAAACTGTCGATT
ATTGCAGATCACAAAATATTGCAGTAATGGGTTACTGCCCTTTAGCTCGT
GCTCGTTTGTTCGGGAAATATCCAGTCTTCGGGGAGCTCTCTGCAAAACT
GAAGAAAACAGAAGCTCAAATATTTCTACGCTGGGCTTTGCAAAAGCGCT
TCATCACAATACCAAAGTCAGCAAATGCGTCCAGAATACAGGAAAACTGC
GATTtatatgattttgaaatttcccaagAAGATATGACCAGTATTGAGCA
GCTGGTTGATGGTGAGCAAATCTCAATGGCGGCGGGCGCTTTGAAGCATT
CATGGGCGGAGATCAAAGAACGAGATGTCCCAGGTGGATGGTAAgAAAAC
AGAAAGTTAATAAGAAACATGGCCTCACTCACTGAACGAATAGCACTACA
CGATGGAAACACTATGCCACTTTTTGGCTTAGGATGTTGGGCCATGGATG
AAGAACCAACCTACAATGCTGTCCTAACAGCCTTGAATAAAGGTTACAAA
TTAATCGATACCGCACACTGTTATAAAAATGAGCAATCGGTTGGCAAGGC
GATTAAAGATTCTGGACTTTccagaaatgatttttttcttgtcaCAAAGT
TGGATCCGCATCAGCATGGAGCTGAAGGAGTCAAACAAAGCTTGAAAGAA
AGTCTTGATAAACTGGGTTTGGAATATGTTGACTTGTTTTTGATTCATAC
TCCGATGTCTGGAAAAGTCTTGGAAACATGGAAAGCTATGATGGAAATAA
AGAAAGAGGGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAATGGAGAA
CATATTCAAGCACTCTTGGATGCTGGACTTGAGAAACCTGCTGTCAATCA
ATTCGAAATTCATCCCACAAATAGACAGAATGAAACTGTCGATTATTGCA
GATCACAAAATATTGCAGTAATGGGTTACTGCCCTTTAGCTCGTGCTCGT
TTGTTCGGGAAATATCCAGTCTTCGGGGAGCTCTCTGCAAAACTGAAGAA
AACAGAAGCTCAAATATTTCTACGCTGGGCTTTGCAAAAGCGCTTCATCA
CAATACCAAAGTCAGCAAATGCGTCCAGAATACAGGAAAACTGCGATTta
tatgattttgaaatttcccaagAAGATATGACCAGTATTGAGCAGCTGGT
TGATGGTGAGCAAATCTCAATGGCGGCGGGCGCTTTGAAGCATTCATGGG
CGGAGATCAAAGAACGAGATGTCCCAGGTGGATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010041XLOC_010041Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017907-proteinTCONS_00017907-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017907-exon-sc0000279-1491911889:82693..83227TCONS_00017907-exon-sc0000279-1491911889:82693..83227Clytia hemisphaericaexon
TCONS_00017907-exon-sc0000279-1510915933:82693..83227TCONS_00017907-exon-sc0000279-1510915933:82693..83227Clytia hemisphaericaexon
TCONS_00017907-exon-sc0000279-1575043694:82693..83227TCONS_00017907-exon-sc0000279-1575043694:82693..83227Clytia hemisphaericaexon
TCONS_00017907-exon-sc0000279-1491911889:84455..85094TCONS_00017907-exon-sc0000279-1491911889:84455..85094Clytia hemisphaericaexon
TCONS_00017907-exon-sc0000279-1510915933:84455..85094TCONS_00017907-exon-sc0000279-1510915933:84455..85094Clytia hemisphaericaexon
TCONS_00017907-exon-sc0000279-1575043694:84455..85094TCONS_00017907-exon-sc0000279-1575043694:84455..85094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:82693..85094 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.9622	72.9477	18.1861	11.989	6.79494	6.50883	13.8382	15.1048	28.9787	27.5599	44.3563	31.0177	32.6231	31.9558	51.3563	58.8495	29.9233	32.1455	18.1982	20.4164	17.2549	17.5985	38.7857	36.2851	12.3839	13.211	20.5429	14.6786	22.7784	20.8662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020471Aldo/keto_reductase
IPR023210NADP_OxRdtase_dom
IPR018170Aldo/ket_reductase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00017907 vs. Swiss-Prot (Human)
Match: AK1C3 (Aldo-keto reductase family 1 member C3 OS=Homo sapiens GN=AKR1C3 PE=1 SV=4)

HSP 1 Score: 179.489 bits (454), Expect = 4.224e-52
Identity = 110/299 (36.79%), Postives = 167/299 (55.85%), Query Frame = 2 
Query:   26 MASLTERIALHDGNTMPLFGLGCWAMDEEPTYNAVLT---ALNKGYKLIDTAHCYKNEQSVGKAIK----DSGLSRNDFFLVTKLDPHQHGAEGVKQSLKESLDKLGLEYVDLFLIHTPMS-------------GKVL-------ETWKAMMEIKKEGKAKSIGVSNFNGEHIQALLD-AGLE-KPAVNQFEIHPTNRQNETVDYCRSQNIAVMGYCPLARAR----------LFGKYPVFGELSAKLKKTEAQIFLRWALQKRFITIPKSANASRIQENCDLYDFEISQEDMTSIEQL 805
            M S  + + L+DG+ MP+ G G +A  E P   A+     A+  G++ ID+AH Y NE+ VG AI+    D  + R D F  +KL    H  E V+ +L+ SL K  L+YVDL+LIH+PMS             GKV+        TW+AM + K  G AKSIGVSNFN   ++ +L+  GL+ KP  NQ E HP   +++ +D+C+S++I ++ Y  L   R          +  + PV   L+ K K+T A I LR+ LQ+  + + KS N  RI++N  +++F+++ EDM +I+ L
Sbjct:    1 MDSKHQCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYSALGSQRDKRWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGL 299
The following BLAST results are available for this feature:
BLAST of TCONS_00017907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1C34.224e-5236.79Aldo-keto reductase family 1 member C3 OS=Homo sap... [more]
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