TCONS_00017906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017906
Unique NameTCONS_00017906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017906 ID=TCONS_00017906|Name=TCONS_00017906|organism=Clytia hemisphaerica|type=transcript|length=1255bp
ggaaaaaaaaacaaataatagcAGGGAAAAAATTTCAGTGATTAAAATGG
CTTCGATTGGAGAAAAAGTTGATTTGTGTGACGGAAATTCAATGCCTCTG
TTTGGTTTTGGATGTTGGGACCTAGACAACGAAGGTGACGTTGCTTACAA
TTCTGTTACTGCTGCTCTTAAGGAAGGCTATCGACTTATTGACACAGCTG
CTTTGTATGGAAATGAAGAGTCTGTCGGCAGAGCTTTGAAAGCTAGTTCC
ATCAAACGCGTAGACCTATTTGTTGTGANTCGGCAGAGCTTTAAAAGCTA
GTTCCATCAAACGTGAAGACCTATTTGTTGTGACTAAACTGGATCTTCAT
AAACACGGTTATGAGACAGCTAAAGAAAGCTTGAAAGAAAGTCTTGATAA
ACTGGGCTTGGATTATGTTGACTTATTTTTGATTCATACTCCGATGCCTG
GAAAAGTCTTGGATTCATGGAAAGCTATGATGGAACTAAAGAAAGAGGGA
AAAGCAAAAAGTATTGGAGTTTCCAATTTCAATGGAGAACATATTCAAGC
ACTCTTAGATGCGGGACTTGAGAAACCTGCTGTTAATCAATTCGAAATTC
ATCCTATGCATAGGAGGGATGAAGTTGTCAAATATTGCCGTGACAATGAT
ATTACCGTCATGGGTTACTGTCCCTTAGCACGTGGACAAATCCTTAAACC
TGGAACATGTCCATTAGCCGAAGAGATATCTAACAAAGTTAACAAAACTG
TTTCTCAGGTTTGCTTACGGTGGGCCCTTCAAAAACGTTATATCACAATT
CCAAAGTCAACAAGCGCTGTACATATCCGTGAGAATTGTCAATTATATGA
TTTTGTTCTTTCTGATGAAGAGATGTCCAGATTTGAGAATCTGAAAACTG
ACATGCAAATTTCGGTAGCTTGTGAAGCTATGAAGCATACTTGGAATGAA
ATCAAAGGTAATGATAAGCCTGGCCAATGGGAAATGTAAATGTGGCTCTG
GATGATGCGAGTGTAGCCCTGGAAGATGCGAGAATGTGCAGTTATAATTC
ACAACCTTCAAAAATGTTGTAGATTTTTTATAAAgaggaaatattttcaa
atcattgTATTCTCTTTTGTAGACGGATTATTTTTCAGACATTTTTTATC
GATAGCACATTTAGGTTATACATACACGCCCTTTAAATCGTTCAAATACA
GAAAAGTGAGAgagaaaaatgttttgacaATTTAACGTTAAGCTTGCGAT
TATCT
Run BLAST on NCBI

protein sequence of TCONS_00017906-protein

>TCONS_00017906-protein ID=TCONS_00017906-protein|Name=TCONS_00017906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MPGKVLDSWKAMMELKKEGKAKSIGVSNFNGEHIQALLDAGLEKPAVNQF
EIHPMHRRDEVVKYCRDNDITVMGYCPLARGQILKPGTCPLAEEISNKVN
KTVSQVCLRWALQKRYITIPKSTSAVHIRENCQLYDFVLSDEEMSRFENL
KTDMQISVACEAMKHTWNEIKGNDKPGQWEM
Run BLAST on NCBI

transcript from alignment at sc0000279:80350..82473+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017906 ID=TCONS_00017906|Name=TCONS_00017906|organism=Clytia hemisphaerica|type=transcript|length=2124bp|location=Sequence derived from alignment at sc0000279:80350..82473+ (Clytia hemisphaerica)
ggaaaaaaaaacaaataatagcAGGGAAAAAATTTCAGTGATTAAAATGG
CTTCGATTGGAGAAAAAGTTGATTTGTGTGACGGAAATTCAATGCCTCTG
TTTGGTTTTGGATGTTGGGACCTAGACAACGAAGGTGACGTTGCTTACAA
TTCTGTTACTGCTGCTCTTAAGGAAGGCTATCGACTTATTGACACAGCTG
CTTTGTATGGAAATGAAGAGTCTGTCGGCAGAGCTTTGAAAGCTAGTTCC
ATCAAACGCGTAGACCTATTTGTTGTGANTCGGCAGAGCTTTAAAAGCTA
GTTCCATCAAACGTGAAGACCTATTTGTTGTGACTAAACTGGATCTTCAT
AAACACGGTTATGAGACAGCTAAAGAAAGCTTGAAAGAAAGTCTTGATAA
ACTGGGCTTGGATTATGTTGACTTATTTTTGATTCATACTCCGATGCCTG
GAAAAGTCTTGGATTCATGGAAAGCTATGATGGAACTAAAGAAAGAGGGA
AAAGCAAAAAGTATTGGAGTTTCCAATTTCAATGGAGAACATATTCAAGC
ACTCTTAGATGCGGGACTTGAGAAACCTGCTGTTAATCAATTCGAAATTC
ATCCTATGCATAGGAGGGTATGttttaatgaaaaaagtttgaaaattgag
cCATCAAAAGTTTACTGTTCAAATAgttcaaaaaaattaagtttaaacAG
AGACAAGCTTTTTTGTAGCGAACCCGGTACTTTTTTCCCCTAAAGATGTA
CACGAATAAAAGATGTCTTCCAAACTTCTTCAAAATGTAAGATCTGTATT
CTAAAATCGATCCAATCGcttctttcaatgaaaaaagagaacggcatttt
ttgaaaatgtaaaaaaagcttTTCGCTATAATGCCGTCATCAGTTGCTAT
GGGCTTGGGCTATTACTCTGTACCAGaatgtatctcacgtttatcgcttg
gaagtacactctgtgcgcattgtctgtttgctAAAAAGATTCCCGTACGg
aaacctctgcgatgaagtatgatttataaataacaACACTCCTCTAtctc
gtcgtctcccctctctcaccaacatcccattgcagcggtcggtttgaaaa
atttcaaaagagaaaagacaatgacaacagaccctctacggcaatgaatt
ttgaaattggccGTAGATactagtgaggttaagtaaatcgatATAATCAT
GACGAAAGTTTcaagtgagtttcaaccaatcaattttcgtattttcacta
gcctgttacatttttcgtccgtcgtcgcgATTATGTCGGTATAATTAACC
TCACTaatgggtctgtgtacagacaaggNtataacaggctagtgagtttc
aaccaatcaattttcgtattttcactagcctgttacatttttcgtccgtc
gtcgcgATTATGTCGGTATAATTAACCTCACTaatgggtctgtgtacaga
caagggCTATATCCGGTTCTGGTTCTTTTCTTACAGGATGAAGTTGTCAA
ATATTGCCGTGACAATGATATTACCGTCATGGGTTACTGTCCCTTAGCAC
GTGGACAAATCCTTAAACCTGGAACATGTCCATTAGCCGAAGAGATATCT
AACAAAGTTAACAAAACTGTTTCTCAGGTTTGCTTACGGTGGGCCCTTCA
AAAACGTTATATCACAATTCCAAAGTCAACAAGCGCTGTACATATCCGTG
AGAATTGTCAATTATATGATTTTGTTCTTTCTGATGAAGAGATGTCCAGA
TTTGAGAATCTGAAAACTGACATGCAAATTTCGGTAGCTTGTGAAGCTAT
GAAGCATACTTGGAATGAAATCAAAGGTAATGATAAGCCTGGCCAATGGG
AAATGTAAATGTGGCTCTGGATGATGCGAGTGTAGCCCTGGAAGATGCGA
GAATGTGCAGTTATAATTCACAACCTTCAAAAATGTTGTAGATTTTTTAT
AAAgaggaaatattttcaaatcattgTATTCTCTTTTGTAGACGGATTAT
TTTTCAGACATTTTTTATCGATAGCACATTTAGGTTATACATACACGCCC
TTTAAATCGTTCAAATACAGAAAAGTGAGAgagaaaaatgttttgacaAT
TTAACGTTAAGCTTGCGATTATCT

Coding sequence (CDS) from alignment at sc0000279:80350..82473+

>TCONS_00017906 ID=TCONS_00017906|Name=TCONS_00017906|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000279:80350..82473+ (Clytia hemisphaerica)
ATGCCTGGAAAAGTCTTGGATTCATGGAAAGCTATGATGGAACTAAAGAA
AGAGGGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAATGGAGAACATA
TTCAAGCACTCTTAGATGCGGGACTTGAGAAACCTGCTGTTAATCAATTC
GAAATTCATCCTATGCATAGGAGGGATGAAGTTGTCAAATATTGCCGTGA
CAATGATATTACCGTCATGGGTTACTGTCCCTTAGCACGTGGACAAATCC
TTAAACCTGGAACATGTCCATTAGCCGAAGAGATATCTAACAAAGTTAAC
AAAACTGTTTCTCAGGTTTGCTTACGGTGGGCCCTTCAAAAACGTTATAT
CACAATTCCAAAGTCAACAAGCGCTGTACATATCCGTGAGAATTGTCAAT
TATATGATTTTGTTCTTTCTGATGAAGAGATGTCCAGATTTGAGAATCTG
AAAACTGACATGCAAATTTCGGTAGCTTGTGAAGCTATGAAGCATACTTG
GAATGAAATCAAAGGTAATGATAAGCCTGGCCAATGGGAAATGTAAATGC
CTGGAAAAGTCTTGGATTCATGGAAAGCTATGATGGAACTAAAGAAAGAG
GGAAAAGCAAAAAGTATTGGAGTTTCCAATTTCAATGGAGAACATATTCA
AGCACTCTTAGATGCGGGACTTGAGAAACCTGCTGTTAATCAATTCGAAA
TTCATCCTATGCATAGGAGGGATGAAGTTGTCAAATATTGCCGTGACAAT
GATATTACCGTCATGGGTTACTGTCCCTTAGCACGTGGACAAATCCTTAA
ACCTGGAACATGTCCATTAGCCGAAGAGATATCTAACAAAGTTAACAAAA
CTGTTTCTCAGGTTTGCTTACGGTGGGCCCTTCAAAAACGTTATATCACA
ATTCCAAAGTCAACAAGCGCTGTACATATCCGTGAGAATTGTCAATTATA
TGATTTTGTTCTTTCTGATGAAGAGATGTCCAGATTTGAGAATCTGAAAA
CTGACATGCAAATTTCGGTAGCTTGTGAAGCTATGAAGCATACTTGGAAT
GAAATCAAAGGTAATGATAAGCCTGGCCAATGGGAAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010040XLOC_010040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017906-proteinTCONS_00017906-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017906-exon-sc0000279-1491911889:80350..80966TCONS_00017906-exon-sc0000279-1491911889:80350..80966Clytia hemisphaericaexon
TCONS_00017906-exon-sc0000279-1510915933:80350..80966TCONS_00017906-exon-sc0000279-1510915933:80350..80966Clytia hemisphaericaexon
TCONS_00017906-exon-sc0000279-1575043694:80350..80966TCONS_00017906-exon-sc0000279-1575043694:80350..80966Clytia hemisphaericaexon
TCONS_00017906-exon-sc0000279-1491911889:81836..82473TCONS_00017906-exon-sc0000279-1491911889:81836..82473Clytia hemisphaericaexon
TCONS_00017906-exon-sc0000279-1510915933:81836..82473TCONS_00017906-exon-sc0000279-1510915933:81836..82473Clytia hemisphaericaexon
TCONS_00017906-exon-sc0000279-1575043694:81836..82473TCONS_00017906-exon-sc0000279-1575043694:81836..82473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:80350..82473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.2574	50.7989	21.7012	14.5749	14.7243	10.7169	21.3091	24.1674	28.3627	24.2067	46.9887	23.7381	33.0414	36.6597	41.0189	49.6352	21.8718	20.3557	21.7394	22.1087	13.6376	13.8089	41.016	31.6789	16.2459	18.4583	15.4498	11.882	24.9764	22.2138
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020471Aldo/keto_reductase
IPR023210NADP_OxRdtase_dom
IPR018170Aldo/ket_reductase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00017906 vs. Swiss-Prot (Human)
Match: AK1D1 (3-oxo-5-beta-steroid 4-dehydrogenase OS=Homo sapiens GN=AKR1D1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.780e-39
Identity = 79/232 (34.05%), Postives = 123/232 (53.02%), Query Frame = 3 
Query:  306 IKREDLFVVTKLDLHKHGYETAKESLKESLDKLGLDYVDLFLIHTPMPGKVLD--------------------SWKAMMELKKEGKAKSIGVSNFNGEHIQALLD-AGLE-KPAVNQFEIHPMHRRDEVVKYCRDNDITVMGYCPL--ARGQILKPGTCP------LAEEISNKVNKTVSQVCLRWALQKRYITIPKSTSAVHIRENCQLYDFVLSDEEMSRFENLKTDMQI 911
            ++RED+F   KL    H  E  + +L+ +L  L LDYVDL++I  PM  K  D                    +W+AM   K  G  KS+GVSNFN   ++ +L+  GL+ KP  NQ E HP   + +++K+C+ +DI +  Y PL  +R  I    + P      L   +  + NKT +Q+ LR+ +Q+  + IPKS +   I+EN Q++DF L++EEM   E L  +++ 
Sbjct:   77 VRREDIFYCGKLWATNHVPEMVRPTLERTLRVLQLDYVDLYIIEVPMAFKPGDEIYPRDENGKWLYHKSNLCATWEAMEACKDAGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQPKLLKFCQQHDIVITAYSPLGTSRNPIWVNVSSPPLLKDALLNSLGKRYNKTAAQIVLRFNIQRGVVVIPKSFNLERIKENFQIFDFSLTEEEMKDIEALNKNVRF 308

HSP 2 Score: 49.6766 bits (117), Expect = 4.780e-39
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 2 
Query:   47 MASIGEKVDLCDGNSMPLFGFGCWDLDN---EGDVAYNSVTAALKEGYRLIDTAALYGNEESVGRALKAS----SIKRVDLF 271
            +++   ++ L DGNS+P+ G G +       +G  A  SV  A+  GYR ID A +Y NE  VG A++       ++R D+F
Sbjct:    3 LSAASHRIPLSDGNSIPIIGLGTYSEPKSTPKGACA-TSVKVAIDTGYRHIDGAYIYQNEHEVGEAIREKIAEGKVRREDIF 83
The following BLAST results are available for this feature:
BLAST of TCONS_00017906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1D14.780e-3934.053-oxo-5-beta-steroid 4-dehydrogenase OS=Homo sapie... [more]
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