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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017900 ID=TCONS_00017900|Name=TCONS_00017900|organism=Clytia hemisphaerica|type=transcript|length=2479bpRun BLAST on NCBI protein sequence of TCONS_00017900-protein >TCONS_00017900-protein ID=TCONS_00017900-protein|Name=TCONS_00017900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp MATEVDGESVDESNVLKILLATDCHIGYAEKDPIRQNDSFVSFEEILQLARun BLAST on NCBI transcript from alignment at sc0000279:2526..34722+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017900 ID=TCONS_00017900|Name=TCONS_00017900|organism=Clytia hemisphaerica|type=transcript|length=32197bp|location=Sequence derived from alignment at sc0000279:2526..34722+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000279:2526..34722+ >TCONS_00017900 ID=TCONS_00017900|Name=TCONS_00017900|organism=Clytia hemisphaerica|type=CDS|length=36828bp|location=Sequence derived from alignment at sc0000279:2526..34722+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017900 vs. Swiss-Prot (Human)
Match: MRE11 (Double-strand break repair protein MRE11 OS=Homo sapiens GN=MRE11 PE=1 SV=3) HSP 1 Score: 534.258 bits (1375), Expect = 2.653e-178 Identity = 260/505 (51.49%), Postives = 365/505 (72.28%), Query Frame = 1
Query: 361 GESVDESNVLKILLATDCHIGYAEKDPIRQNDSFVSFEEILQLAQKEKVDMILLGGDLFHENKPSRHTIHRTLSLLRKYCLGDKDCLLEFMSDAEVNFAHCDFKHANYLDPNLNVAYPLFSVHGNHDDPTGEGSLSAIDILSAAGVLNHFGKAENCDKIDMTPVLLKKGDTKLALYGLGSMRDERLYKTFCLKNVHMLRPREEPDSWFNIFVIHQNRAKHGPKNHIPESFLDEFLDLVVWGHEHECLITPVASESGKNFFVTQPGSSIATSLSEGESEQKKVGLLEISGKQFRIKEIELKTVRQFYIEHVVLSD-----TSLNSHEDEKVYNYLTEKIEQLITRAGNNRSGHEKQPELPLIRIKVEYSGGYEIINPHRFGQQFVGRVANSKDLLLFYKKKTYSATSRTKDETDGVGRGQEMTY-SQASGIKMEDLINEYL-TSDSNIGNLSILSERKLSKALNEFVLKDEKDAIPELVKYQLRKTQTELKRRNL-VEEEKIDAEI 1851
+++D+ N KIL+ATD H+G+ EKD +R ND+FV+ +EIL+LAQ+ +VD ILLGGDLFHENKPSR T+H L LLRKYC+GD+ E +SD VNF F NY D NLN++ P+FS+HGNHDDPTG +L A+DILS AG +NHFG++ + +KID++PVLL+KG TK+ALYGLGS+ DERLY+ F K V MLRP+E+ +SWFN+FVIHQNR+KHG N IPE FLD+F+DLV+WGHEHEC I P +E + F+++QPGSS+ TSLS GE+ +K VGLL I G++ + +I L TVRQF++E +VL++ N + + ++ EKIE+++ A R G+ QPE PL+R++V+YSGG+E + RF Q+FV RVAN KD++ F++ + +T +E + G+ +T S+ + +++EDL+ +Y T++ N+ LS+L+ER + +A+ EFV K+EKDAI ELVKYQL KTQ LK R++ E+KID E+
Sbjct: 4 ADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQ-QLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHR--EQKEKTGEE---INFGKLITKPSEGTTLRVEDLVKQYFQTAEKNV-QLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLKERHIDALEDKIDEEV 501 The following BLAST results are available for this feature:
BLAST of TCONS_00017900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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