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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017896 ID=TCONS_00017896|Name=TCONS_00017896|organism=Clytia hemisphaerica|type=transcript|length=1397bp
ataaacgactggattcccagtctatgGATTTCCAGGAGGTTAGAATTGTT
TTCTTTTACACACCAAAATGATAATGACTGAAAATATACATACTGAAAGA
ATAATAGCGTGTTCAGAAATATACGATTGTACCAGCGGTGCGAATAATCC
CCCAACAACATACGAGATATTGACCATAGTCTTTCGGACACCAGCTGCAA
AACTTTGAGTATTTAATGGTATAATTTTACCGAGTAAAGCCGCTAAGAAA
ACTTGATCAACAGACCATCCGGCTCCTGTTGATATTGAGAATAAAACCAA
CATTGATATTCCAAAAATCTTAAATTGATAAGTCACCACTGATAAAGAAA
TAGCTTGTAGGGCGATTAAAATTGAACATAGTCCAAGaatgataaaataa
atttcaCTGCCACCATGATCGAATTGGTTACTTATGAGCATTGTAATACC
AAAGACGCAGGCGTTTAGGGTGTAAAGAAGTCCAACGAATCTGACTTGAA
TGTGATATATACTATTCGATATGATTGGTATATAGATGGCATTGAAAACC
ATTGAAAAATACCCACACAGGTAACTGACAAGTAGGATATAATTAAATTC
GGTTATTTTCAGTAGATCGACCAGGGATAAAGGGTTTTCATTGTTTCTCA
GTTCTGTCTTATCTAATACTTTTCCTGTATCACTAAGGTTGTTATTCTCC
ACAGTCTTTTTGTTTTTCCATAAAAGTTGGTGAACTTCAGACTCTTTGGA
CAAGTCGGCAACGAAGAAAAAAGctgtcaaaaatatcaaaacccaTATCC
CACTCACTAGCAAGAATGGAAAATTATAAACTGTAACATCCAtcccaaaa
acatgaaaatctaCACCACCGCATATTGTTATAACCAAGGGGCTTCCAAT
GTATGCCGTATAATAGAGCACCATGAATGTTGATAGCTTTTGTAATTGCT
CTTCTCGAGAATAATTCCTTATAATCTCACCGAATAAAACCGAAATCAAT
GAATCTGCGAATCCTTGTATAGCACGTCCTAACATGACAATTAATTGATG
CTTAGGTGTGGCATATATTATGTTCCCGCATGCTGCAAATAGACTAGTTG
CCAATAAGATGAGACGAATGTTTTTAGTGTGGTCTGCATATTTGGTGATG
GTTAAACAGCCGATCATAGAAGCCAGAGGATAAGTTGATGCTATGATCCC
GAACCACAATTGAGGATTTGGTGCTTTCACTTCGTCTTTGATATAGCTGA
GGAGAGTTGGAATAGATAGACCGTATTCTAACCCCAAAACAAGAGAAAAT
AAACAGAACGCTCGAAAAGTTGTTCGACGTTTCTTTTCCCATAATTTGAT
CCTTTGAAGTTGTTCTTGGTGGTCAAGCTCAACGCCCTGCATTTCAC Run BLAST on NCBI protein sequence of TCONS_00017896-protein >TCONS_00017896-protein ID=TCONS_00017896-protein|Name=TCONS_00017896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
EMQGVELDHQEQLQRIKLWEKKRRTTFRAFCLFSLVLGLEYGLSIPTLLS
YIKDEVKAPNPQLWFGIIASTYPLASMIGCLTITKYADHTKNIRLILLAT
SLFAACGNIIYATPKHQLIVMLGRAIQGFADSLISVLFGEIIRNYSREEQ
LQKLSTFMVLYYTAYIGSPLVITICGGVDFHVFGMDVTVYNFPFLLVSGI
WVLIFLTAFFFVADLSKESEVHQLLWKNKKTVENNNLSDTGKVLDKTELR
NNENPLSLVDLLKITEFNYILLVSYLCGYFSMVFNAIYIPIISNSIYHIQ
VRFVGLLYTLNACVFGITMLISNQFDHGGSEIYFIILGLCSILIALQAIS
LSVVTYQFKIFGISMLVLFSISTGAGWSVDQVFLAALLGKIIPLNTQSFA
AGVRKTMVNISYVVGGLFAPLVQSYISEHAIILSVCIFSVIIILVCKRKQ
F Run BLAST on NCBI transcript from alignment at sc0000278:244673..246069 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017896 ID=TCONS_00017896|Name=TCONS_00017896|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at sc0000278:244673..246069 (Clytia hemisphaerica)
GTGAAATGCAGGGCGTTGAGCTTGACCACCAAGAACAACTTCAAAGGATC
AAATTATGGGAAAAGAAACGTCGAACAACTTTTCGAGCGTTCTGTTTATT
TTCTCTTGTTTTGGGGTTAGAATACGGTCTATCTATTCCAACTCTCCTCA
GCTATATCAAAGACGAAGTGAAAGCACCAAATCCTCAATTGTGGTTCGGG
ATCATAGCATCAACTTATCCTCTGGCTTCTATGATCGGCTGTTTAACCAT
CACCAAATATGCAGACCACACTAAAAACATTCGTCTCATCTTATTGGCAA
CTAGTCTATTTGCAGCATGCGGGAACATAATATATGCCACACCTAAGCAT
CAATTAATTGTCATGTTAGGACGTGCTATACAAGGATTCGCAGATTCATT
GATTTCGGTTTTATTCGGTGAGATTATAAGGAATTATTCTCGAGAAGAGC
AATTACAAAAGCTATCAACATTCATGGTGCTCTATTATACGGCATACATT
GGAAGCCCCTTGGTTATAACAATATGCGGTGGTGtagattttcatgtttt
tgggaTGGATGTTACAGTTTATAATTTTCCATTCTTGCTAGTGAGTGGGA
TAtgggttttgatatttttgacagCTTTTTTCTTCGTTGCCGACTTGTCC
AAAGAGTCTGAAGTTCACCAACTTTTATGGAAAAACAAAAAGACTGTGGA
GAATAACAACCTTAGTGATACAGGAAAAGTATTAGATAAGACAGAACTGA
GAAACAATGAAAACCCTTTATCCCTGGTCGATCTACTGAAAATAACCGAA
TTTAATTATATCCTACTTGTCAGTTACCTGTGTGGGTATTTTTCAATGGT
TTTCAATGCCATCTATATACCAATCATATCGAATAGTATATATCACATTC
AAGTCAGATTCGTTGGACTTCTTTACACCCTAAACGCCTGCGTCTTTGGT
ATTACAATGCTCATAAGTAACCAATTCGATCATGGTGGCAGtgaaattta
ttttatcattCTTGGACTATGTTCAATTTTAATCGCCCTACAAGCTATTT
CTTTATCAGTGGTGACTTATCAATTTAAGATTTTTGGAATATCAATGTTG
GTTTTATTCTCAATATCAACAGGAGCCGGATGGTCTGTTGATCAAGTTTT
CTTAGCGGCTTTACTCGGTAAAATTATACCATTAAATACTCAAAGTTTTG
CAGCTGGTGTCCGAAAGACTATGGTCAATATCTCGTATGTTGTTGGGGGA
TTATTCGCACCGCTGGTACAATCGTATATTTCTGAACACGCTATTATTCT
TTCAGTATGTATATTTTCAGTCATTATCATTTTGGTGTGTAAAAGAAAAC
AATTCTAACCTCCTGGAAATCcatagactgggaatccagtcgtttat Coding sequence (CDS) from alignment at sc0000278:244673..246069 >TCONS_00017896 ID=TCONS_00017896|Name=TCONS_00017896|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000278:244673..246069 (Clytia hemisphaerica)
GAAATGCAGGGCGTTGAGCTTGACCACCAAGAACAACTTCAAAGGATCAA
ATTATGGGAAAAGAAACGTCGAACAACTTTTCGAGCGTTCTGTTTATTTT
CTCTTGTTTTGGGGTTAGAATACGGTCTATCTATTCCAACTCTCCTCAGC
TATATCAAAGACGAAGTGAAAGCACCAAATCCTCAATTGTGGTTCGGGAT
CATAGCATCAACTTATCCTCTGGCTTCTATGATCGGCTGTTTAACCATCA
CCAAATATGCAGACCACACTAAAAACATTCGTCTCATCTTATTGGCAACT
AGTCTATTTGCAGCATGCGGGAACATAATATATGCCACACCTAAGCATCA
ATTAATTGTCATGTTAGGACGTGCTATACAAGGATTCGCAGATTCATTGA
TTTCGGTTTTATTCGGTGAGATTATAAGGAATTATTCTCGAGAAGAGCAA
TTACAAAAGCTATCAACATTCATGGTGCTCTATTATACGGCATACATTGG
AAGCCCCTTGGTTATAACAATATGCGGTGGTGtagattttcatgtttttg
ggaTGGATGTTACAGTTTATAATTTTCCATTCTTGCTAGTGAGTGGGATA
tgggttttgatatttttgacagCTTTTTTCTTCGTTGCCGACTTGTCCAA
AGAGTCTGAAGTTCACCAACTTTTATGGAAAAACAAAAAGACTGTGGAGA
ATAACAACCTTAGTGATACAGGAAAAGTATTAGATAAGACAGAACTGAGA
AACAATGAAAACCCTTTATCCCTGGTCGATCTACTGAAAATAACCGAATT
TAATTATATCCTACTTGTCAGTTACCTGTGTGGGTATTTTTCAATGGTTT
TCAATGCCATCTATATACCAATCATATCGAATAGTATATATCACATTCAA
GTCAGATTCGTTGGACTTCTTTACACCCTAAACGCCTGCGTCTTTGGTAT
TACAATGCTCATAAGTAACCAATTCGATCATGGTGGCAGtgaaatttatt
ttatcattCTTGGACTATGTTCAATTTTAATCGCCCTACAAGCTATTTCT
TTATCAGTGGTGACTTATCAATTTAAGATTTTTGGAATATCAATGTTGGT
TTTATTCTCAATATCAACAGGAGCCGGATGGTCTGTTGATCAAGTTTTCT
TAGCGGCTTTACTCGGTAAAATTATACCATTAAATACTCAAAGTTTTGCA
GCTGGTGTCCGAAAGACTATGGTCAATATCTCGTATGTTGTTGGGGGATT
ATTCGCACCGCTGGTACAATCGTATATTTCTGAACACGCTATTATTCTTT
CAGTATGTATATTTTCAGTCATTATCATTTTGGTGTGTAAAAGAAAACAA
TTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017896-exon-sc0000278-1491911889:244673..246069 | TCONS_00017896-exon-sc0000278-1491911889:244673..246069 | Clytia hemisphaerica | exon |
| TCONS_00017896-exon-sc0000278-1510915933:244673..246069 | TCONS_00017896-exon-sc0000278-1510915933:244673..246069 | Clytia hemisphaerica | exon |
| TCONS_00017896-exon-sc0000278-1575043694:244673..246069 | TCONS_00017896-exon-sc0000278-1575043694:244673..246069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000278 | supercontig | sc0000278:244673..246069 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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