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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017878 ID=TCONS_00017878|Name=TCONS_00017878|organism=Clytia hemisphaerica|type=transcript|length=1614bp
cccttttctgctgagtcagcaaaatttcaaactctaatatctcatgatct
agcctagcaaaccctataaatgacccctttaatcgatagtactcttcgag
acgcataATTTAAAAGTGGTATCTTTCGCTGGAAATTCTCTCacaaatgc
tgacgtcagcataaaatattgcatttttgaagacgtatcagccAATTCCG
GGGGACTAAGTCCGCCAAATGAGACANggtcccaagggaccatataatga
gaaaataaaataaaaacccatatttactacttgtaaGGGTTGATGCAAAA
AAGCCCTTTTCGCCGCCGGACTAAAGTTGATTTCTTTGAACGgactgttt
tttgtttttttgcattttaacagaacttttacacgtttttattaGACCGA
ACTATaataacataaggcttcgattgccaaaatgttaataacaagctaag
aacattttaatgacctaaaacacccaatttcttaggaaaattgtgaaatt
aagaacatgttaagaacattttaaggcttaaaactcaaaaaattaagaac
atccgaaggcttcaaagattttggatgttcttatgaaaaaaactcttATA
AGAAATCAGGTACCAGGAACACGCTCAATTTTGCGGCCACAATACTTAAA
GAGCAAATCAAGAGTATACTGAACATAAGATAATATTTAAGCTTAGAACA
TAATTTACTGTCTATCCATACTACAAGAGTCTTTGATACTTTGATTTGAG
GATGTCagtatttttggatattttttcatGTAGGTCGTAGCAAAATGAAg
gaaatattatttttgtgTTTATATTGTATTGTGAtctagaaaataatttt
ttgtagtTAGAATATTCGAGAACTAAATTTGGTTAAGATCCGACCCCAGC
GCCTGAAAATCACAAAACTctcagaaaacaaaaatttgataacACTATGT
TTTAGAACCTTGATCCACTTAGAACTCATATGGAATTATGGGACATTTTG
TTTATGTTATAAACGCTTTCGATGAATCCAGGCACTAAGCCTTCCCAAAG
ATGAAAAGTTTCGATCGAATGTGAGGAAGATTATCTCAGGTCTTTGACTA
CTTCTTGTATAGACCAGAGACACCCGGCGAGGGAGGGGCACTCGATTCAT
AAACAGCCGTACGTGCGGCCTTTGaaatcagacccttacagtgcagaact
TTAGCCAAGTTTTagtaaatttgggcaaaaaagcgacccttacagtgctt
ttttttgaaattttttgaccatttaaaggtaaaatatggtcagattttct
aaattttgcacccttagagtgcacttttcTCGTCTTTGCTCAATTCGACC
CTtccagtgcactttgggaagctttgAAAAAGGAACCTTATGGGCCGCAC
GTATGCtcggtcgtttaccttgagtgctcCCCGGGCAGAGACAGAGTGTG
CATTTGGCTCCAAGACTTATACCAAATTTGTTCGTTGAAGAAGATAATAT
AAGATATTCTTaggatattttattttaatgtaatattatttatttgaatT
GGATTTTTGCTTTAGTATTAACATACGGAAAATAAAATCAGTGGGGAAAT
ATTGAAAACAGCAA Run BLAST on NCBI transcript from alignment at sc0000278:314605..316218- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017878 ID=TCONS_00017878|Name=TCONS_00017878|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0000278:314605..316218- (Clytia hemisphaerica)
CCCTTTTCTGCTGAGTCAGCAAAATTTCAAACTCTAATATCTCATGATCT
AGCCTAGCAAACCCTATAAATGACCCCTTTAATCGATAGTACTCTTCGAG
ACGCATAATTTAAAAGTGGTATCTTTCGCTGGAAATTCTCTCACAAATGC
TGACGTCAGCATAAAATATTGCATTTTTGAAGACGTATCAGCCAATTCCG
GGGGACTAAGTCCGCCAAATGAGACANGGTCCCAAGGGACCATATAATGA
GAAAATAAAATAAAAACCCATATTTACTACTTGTAAGGGTTGATGCAAAA
AAGCCCTTTTCGCCGCCGGACTAAAGTTGATTTCTTTGAACGGACTGTTT
TTTGTTTTTTTGCATTTTAACAGAACTTTTACACGTTTTTATTAGACCGA
ACTATAATAACATAAGGCTTCGATTGCCAAAATGTTAATAACAAGCTAAG
AACATTTTAATGACCTAAAACACCCAATTTCTTAGGAAAATTGTGAAATT
AAGAACATGTTAAGAACATTTTAAGGCTTAAAACTCAAAAAATTAAGAAC
ATCCGAAGGCTTCAAAGATTTTGGATGTTCTTATGAAAAAAACTCTTATA
AGAAATCAGGTACCAGGAACACGCTCAATTTTGCGGCCACAATACTTAAA
GAGCAAATCAAGAGTATACTGAACATAAGATAATATTTAAGCTTAGAACA
TAATTTACTGTCTATCCATACTACAAGAGTCTTTGATACTTTGATTTGAG
GATGTCAGTATTTTTGGATATTTTTTCATGTAGGTCGTAGCAAAATGAAG
GAAATATTATTTTTGTGTTTATATTGTATTGTGATCTAGAAAATAATTTT
TTGTAGTTAGAATATTCGAGAACTAAATTTGGTTAAGATCCGACCCCAGC
GCCTGAAAATCACAAAACTCTCAGAAAACAAAAATTTGATAACACTATGT
TTTAGAACCTTGATCCACTTAGAACTCATATGGAATTATGGGACATTTTG
TTTATGTTATAAACGCTTTCGATGAATCCAGGCACTAAGCCTTCCCAAAG
ATGAAAAGTTTCGATCGAATGTGAGGAAGATTATCTCAGGTCTTTGACTA
CTTCTTGTATAGACCAGAGACACCCGGCGAGGGAGGGGCACTCGATTCAT
AAACAGCCGTACGTGCGGCCTTTGAAATCAGACCCTTACAGTGCAGAACT
TTAGCCAAGTTTTAGTAAATTTGGGCAAAAAAGCGACCCTTACAGTGCTT
TTTTTTGAAATTTTTTGACCATTTAAAGGTAAAATATGGTCAGATTTTCT
AAATTTTGCACCCTTAGAGTGCACTTTTCTCGTCTTTGCTCAATTCGACC
CTTCCAGTGCACTTTGGGAAGCTTTGAAAAAGGAACCTTATGGGCCGCAC
GTATGCTCGGTCGTTTACCTTGAGTGCTCCCCGGGCAGAGACAGAGTGTG
CATTTGGCTCCAAGACTTATACCAAATTTGTTCGTTGAAGAAGATAATAT
AAGATATTCTTAGGATATTTTATTTTAATGTAATATTATTTATTTGAATT
GGATTTTTGCTTTAGTATTAACATACGGAAAATAAAATCAGTGGGGAAAT
ATTGAAAACAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017878-exon-sc0000278-1575043694:314605..316218 | TCONS_00017878-exon-sc0000278-1575043694:314605..316218 | Clytia hemisphaerica | exon |
| TCONS_00017878-exon-sc0000278-1510915933:314605..316218 | TCONS_00017878-exon-sc0000278-1510915933:314605..316218 | Clytia hemisphaerica | exon |
| TCONS_00017878-exon-sc0000278-1491911889:314605..316218 | TCONS_00017878-exon-sc0000278-1491911889:314605..316218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000278 | supercontig | sc0000278:314605..316218 - |
Blast
The following BLAST results are available for this feature:
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