TCONS_00017873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017873
Unique NameTCONS_00017873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017873 ID=TCONS_00017873|Name=TCONS_00017873|organism=Clytia hemisphaerica|type=transcript|length=422bp
AACAGGATTCATTTTTATTGCTCAGTGAATCAATGTCTATTCTGCAAGAT
TAATATAAGTAGAATTTGCAGTCGTGTAAAAAATTCTCTGGCAGTTCTCA
TTAAGTTAGTCATTAGTGTTTACTGACCTTCGAGTGTTGCGGAACACATA
CGATACTGTTTTCACGAAAATATGTATGACGTCATTGTTATTGGGGCAGG
AATAAATGGCAGCGCAACAGCTTATGAGCTCAgaaataaacaacaaaaaa
atgttcttctCTTAGAACAGTTTCCACTACCTCACACCCGTGGAAGCTCA
CATGGTCATACAAGAATCACAAGATGTCTGTACGCCAAAAAGATTTATTC
GCAAATGACTCTCGATTCATTTCCAATATGGAGAGATCTTGAACAACAAA
CTGGAGAGCGTTTATACATGTA
Run BLAST on NCBI

transcript from alignment at sc0000278:248584..250632-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017873 ID=TCONS_00017873|Name=TCONS_00017873|organism=Clytia hemisphaerica|type=transcript|length=2049bp|location=Sequence derived from alignment at sc0000278:248584..250632- (Clytia hemisphaerica)
AACAGGATTCATTTTTATTGCTCAGTGAATCAATGTCTATTCTGCAAGAT
TAATATAAGTAGAATTTGCAGTCGTGTAAAAAATTCTCTGGCAGTTCTCA
TTAAGTTAGTCATTAGTGTTTACTGACCTTCGAGTGTTGCGGAACACATA
CGATACTGTTTTCACGAAAATATGTATGACGTCATTGTTATTGGGGCAGG
AATAAATGGCAGCGCAACAGCTTATGAGCTCAGAAATAAACAACAAAAAA
ATGTTCTTCTCTTAGAACAGGTTTGTATAATTCCATTCTAAAATATCTTT
GTAACGACTCATTATGAGCTCAGAAATTAAAAACACAAAAATGTCCTACT
TTAAGAACAGGTTTTCTAAAATATTTTTGCAAATAATTTCGAGCTCAGAA
ATAGCCAACACGAAAAAAAAATGTGTCTCTTGTAGAACAGGCTTTTAGAA
ATCCACTCTAAAATATCTTTACAATGAATTATGAGCTCAGTACAGATAAT
CAACACACAAAAAAGTTTTTTTTAACAGACTTTTAAAAATCCGTTTTAGA
ATATCTTTACAATGAATTATGTGCTCAGAAAAAAACAAGACAAAATTTTT
TTTTTTAAACAGGCTTTTAAAAATCCACTTTAAGATATATTTACAATGAA
TTTTCAGCTCAGAAAAAGCCAACACGAAAATGTGTCTCTTGTAGAACAGG
CTTTTTTAAAATCCACTCTTAAATATCTTTACAATGAATTATGAGCTCAG
TACAGATAATCAACACAAAAAAGTTTTTTTTTAACAGGCTTTTAAAAATC
CACTTTAAAATATCTTTACAATGAATTATGAGCTCAGTACAGATAATCAA
CACAAAAGAGTTTTTTTAACAGACTTTTAAAAATCCACTATTAAATATCT
TTACAATGAATTATAAGCTCAGAAAAAAAAACAGCACAAAAATGTGTCTA
TTGTAGAACAGGCTTTTTTTAAATCCACTTTAAAATATCTTTACAATGAA
TTATGAGCTCAGTACAGATAATCAACACAAAAAAGTTTTTTTTAACAGAC
TTTTTTAAATCCACTTTAAAATATCTTTACAATGAATTATGAGCTCAGTA
CAGATAATCAACACAAAAAAGTGTTTTTAACAGACTTTTAAAAATCCATT
ATTAAATATCTTTACAATGAATTATAAGCTCAGAAAAAAAAACAGCATAA
AAATGTGTCTATTGTAGAACAGGCTTTTTTTAAATCCACTTTAAAATATC
TTCACAATGAATTATGAGCTCAGTACAGACAATCAACACAAAAAAGATTT
TTTTAACAGACTTTTTTAAATCCACTTTAAAATATCTTTACAATGAATTG
TGTGCTCAGAAAAAAACAGCACAAAAATGTTCTTCTTTTCGAAATGGTAG
ACATAAATCCACTTTTTCATTTTAGAGAGTATCACTCTTGTGTAACTATT
CACGATAAATGTTTGAATTATTGAGCACATGGCACACTTACTAAAAACCC
TAGTAATGTCATTGGGTAGGTTGCTGGCATCCACCAACGGATTCGTGCTC
CTTATACCCTATGGGCTCCTATACTACTTGGGGTTTTGTAGAGGTCTGCG
ATTCAGACTAGTCATTGGGTAGATAGAGCAGTAAAGTAATTTCGTGAAAT
CATCAGATGAGATGGAAATTTTATAAGATATTTTAATAATTGGTCATTTG
AAGTAATAAAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTAT
TACTCGTTAATGACCAACCGAATCAAATAAGAGCTTGTAAAAAACCACCT
GGTCCCGAAATTGCATTGCTTGGTGCTTATCATGGATGAAGGTTTTGAAA
AATATTGACAATTCTACAATTTTAAATCTTGTTATTTTCATGTTTAGTTT
CCACTACCTCACACCCGTGGAAGCTCACATGGTCATACAAGAATCACAAG
ATGTCTGTACGCCAAAAAGATTTATTCGCAAATGACTCTCGATTCATTTC
CAATATGGAGAGATCTTGAACAACAAACTGGAGAGCGTTTATACATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010015XLOC_010015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017873-exon-sc0000278-1575043694:250363..250632TCONS_00017873-exon-sc0000278-1575043694:250363..250632Clytia hemisphaericaexon
TCONS_00017873-exon-sc0000278-1575043694:248584..248735TCONS_00017873-exon-sc0000278-1575043694:248584..248735Clytia hemisphaericaexon
TCONS_00017873-exon-sc0000278-1510915933:250363..250632TCONS_00017873-exon-sc0000278-1510915933:250363..250632Clytia hemisphaericaexon
TCONS_00017873-exon-sc0000278-1510915933:248584..248735TCONS_00017873-exon-sc0000278-1510915933:248584..248735Clytia hemisphaericaexon
TCONS_00017873-exon-sc0000278-1491911889:250363..250632TCONS_00017873-exon-sc0000278-1491911889:250363..250632Clytia hemisphaericaexon
TCONS_00017873-exon-sc0000278-1491911889:248584..248735TCONS_00017873-exon-sc0000278-1491911889:248584..248735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:248584..250632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228645	0.184237	0.942951	0.92253	0	0	5.19512	3.48594	4.7715	2.1164	5.49209	3.77129	9.35047	13.5025	6.89917	10.4571	2.28382	1.78643	5.13472	1.48224	4.78958	6.36259	1.90977	3.08934	3.15436	2.10987	1.17364	2.37023	12.233	11.6968
Blast
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BLAST of TCONS_00017873 vs. Swiss-Prot (Human)
Match: SOX (Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.343e-21
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  166 ENMYDVIVIGAGINGSATAYELRNKQQKNVLLLEQFPLPHTRGSSHGHTRITRCLYAKKIYSQMTLDSFPIWRDLEQQTGERLY 417
            ++++D IVIGAGI G  TAY L  K +K +LLLEQF LPH+RGSSHG +RI R  Y +  Y++M  + + IW  LE + G +L+
Sbjct:    5 KDLWDAIVIGAGIQGCFTAYHL-AKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRMMHECYQIWAQLEHEAGTQLH 87
The following BLAST results are available for this feature:
BLAST of TCONS_00017873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX8.343e-2150.00Peroxisomal sarcosine oxidase OS=Homo sapiens GN=P... [more]
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