TCONS_00017821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017821
Unique NameTCONS_00017821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017821 ID=TCONS_00017821|Name=TCONS_00017821|organism=Clytia hemisphaerica|type=transcript|length=688bp
ttttttcacccccactgaattttctgctGGCAATTGATGAGCTCCAAATC
AAAGTTTAATTAAATGAAACTATATAACATCTCTCTTTCACTTCATTAGA
CCTAGACATAGACTAAgcaacaaaattgtttttgatatccactttttttg
cttagaaaagcttaaagcacttcatctagcccttcgggctttacataAAT
CTGTGGTTCATTCAGCTTAAGTCTGACATTTTATTTTACTCATACTTCAG
TTTCGTTGGAGGAACCATCAGAGTCTTTTATTCGAACCAAAATACCATCT
TTTTTGTAGATCAAACTTTCTCGTGTCATGAAACCCATTGATGATGACGA
TTGGGGTGAAAGAAATTTCCGGttgaaacttttcttcttttcccGTATCC
AAACCTGAATGACAGAGCGGAACTCTCGATTCAATACGGTATACATGACC
GGGTTGCACAATGACGTAAGCGTCTTCATGATGTAGAAAAGATTAAGTAT
GGTTAAGTTTATAGTAATTTGGTCTTGTGAAATATGAGATTGAATGTCTA
AATAGATACGGAATGTGAAATGAGGTAACGTCAGTGTCGCGAAACAGAAA
TACATGACGGCAAAAATGTAAACGGCACGTCGCTGTTGTCGTGTGACGTT
TAAAGAGAACTGTCCGGTATATGAGGGTGTCCGTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00017821-protein

>TCONS_00017821-protein ID=TCONS_00017821-protein|Name=TCONS_00017821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
LRTPSYTGQFSLNVTRQQRRAVYIFAVMYFCFATLTLPHFTFRIYLDIQS
HISQDQITINLTILNLFYIMKTLTSLCNPVMYTVLNREFRSVIQVWIREK
KKSFNRKFLSPQSSSSMGFMTRESLIYKKDGILVRIKDSDGSSNETEV
Run BLAST on NCBI

transcript from alignment at sc0000276:228070..228757

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017821 ID=TCONS_00017821|Name=TCONS_00017821|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0000276:228070..228757 (Clytia hemisphaerica)
TTTTACGGACACCCTCATATACCGGACAGTTCTCTTTAAACGTCACACGA
CAACAGCGACGTGCCGTTTACATTTTTGCCGTCATGTATTTCTGTTTCGC
GACACTGACGTTACCTCATTTCACATTCCGTATCTATTTAGACATTCAAT
CTCATATTTCACAAGACCAAATTACTATAAACTTAACCATACTTAATCTT
TTCTACATCATGAAGACGCTTACGTCATTGTGCAACCCGGTCATGTATAC
CGTATTGAATCGAGAGTTCCGCTCTGTCATTCAGGTTTGGATACgggaaa
agaagaaaagtttcaaCCGGAAATTTCTTTCACCCCAATCGTCATCATCA
ATGGGTTTCATGACACGAGAAAGTTTGATCTACAAAAAAGATGGTATTTT
GGTTCGAATAAAAGACTCTGATGGTTCCTCCAACGAAACTGAAGTATGAG
TAAAATAAAATGTCAGACTTAAGCTGAATGAACCACAGATTtatgtaaag
cccgaagggctagatgaagtgctttaagcttttctaagcaaaaaaagtgg
atatcaaaaacaattttgttgcTTAGTCTATGTCTAGGTCTAATGAAGTG
AAAGAGAGATGTTATATAGTTTCATTTAATTAAACTTTGATTTGGAGCTC
ATCAATTGCCagcagaaaattcagtgggggtgaaaaaa

Coding sequence (CDS) from alignment at sc0000276:228070..228757

>TCONS_00017821 ID=TCONS_00017821|Name=TCONS_00017821|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000276:228070..228757 (Clytia hemisphaerica)
TTACGGACACCCTCATATACCGGACAGTTCTCTTTAAACGTCACACGACA
ACAGCGACGTGCCGTTTACATTTTTGCCGTCATGTATTTCTGTTTCGCGA
CACTGACGTTACCTCATTTCACATTCCGTATCTATTTAGACATTCAATCT
CATATTTCACAAGACCAAATTACTATAAACTTAACCATACTTAATCTTTT
CTACATCATGAAGACGCTTACGTCATTGTGCAACCCGGTCATGTATACCG
TATTGAATCGAGAGTTCCGCTCTGTCATTCAGGTTTGGATACgggaaaag
aagaaaagtttcaaCCGGAAATTTCTTTCACCCCAATCGTCATCATCAAT
GGGTTTCATGACACGAGAAAGTTTGATCTACAAAAAAGATGGTATTTTGG
TTCGAATAAAAGACTCTGATGGTTCCTCCAACGAAACTGAAGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009995XLOC_009995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017821-proteinTCONS_00017821-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017821-exon-sc0000276-1491911889:228070..228757TCONS_00017821-exon-sc0000276-1491911889:228070..228757Clytia hemisphaericaexon
TCONS_00017821-exon-sc0000276-1510915933:228070..228757TCONS_00017821-exon-sc0000276-1510915933:228070..228757Clytia hemisphaericaexon
TCONS_00017821-exon-sc0000276-1575043694:228070..228757TCONS_00017821-exon-sc0000276-1575043694:228070..228757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:228070..228757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0722263	0	0	0	0	0.0952239	0	0.124828	0.23193	0	0.197311	0.147777	0	0	0.0451339	0.0556013	0	0.236202	0.247169	0.358057	0.209577	0.169846	0.772073	0.397608	0.354856	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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