TCONS_00017808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017808
Unique NameTCONS_00017808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017808 ID=TCONS_00017808|Name=TCONS_00017808|organism=Clytia hemisphaerica|type=transcript|length=1350bp
AAATATTATTGTACAATCGTCAATGAAAACAATCGCTTATCTATCTGGTT
TGGAATCACAACACTGGCAACAGATTATTTGGTGATTGATTGAGTGTTTC
TTCTCAAATGAGAATGCAGCTTAAACCAGCCATTGAAACCCAACAACAAA
CAAAATCGTGTGAAATATGGGAACAGCAAAATAATAAGGTGAATCAACAA
AACAACATGGCAACTTTGACACAACCGGTATTATCTAATACATCATTTTC
ACCTATCAAAACAACAATGGGAGATACCGATATCATAAATCAATGTGTCA
CAATGGCAAAAATTTCTAAACCACCAAGCTCACCGACCAGTGCAAAACCT
ACCGAAACATCTACGAATGAGTCACCAAAAATGAATGGTACATTGTCACC
TAAGCCATACACAACATCACAGAATAAGCCACCAAAGATAAAATTATTGA
ATAGAAGTGCAAATGTAGCTAGTCCAGTTGCAGACCTCAATGGGattGAG
GATAATAATACTCAAGATATTCAAGAGGGtgaaactcaaaaagaaaaaga
agaagctgTAGCGGTAATGGAACCTAGTCTAGAAACCCCTGAAGATATTG
TTAAAGTCCAACAGATAAAGATACAACCAGATGTGACGTCACAAACACTT
CACCGCCCGCCACAACAACAAACGCAGACACAACAACAAGCATATAATGT
GGAATACAGTTCATCTCCCTCGTCCACAACCTCTTCGTTGAACAGAGaaa
actcACTGGACTATAAAGATTCAACTGGTGTAGATTTACACGACTTCATG
GTAAAGACACTAAAAGAAAACCCAAGGGACAGGCTAATGCTCTTAAAATT
AGAACGAGATTTCACAGAGTTCATTGAAGATAAAAACAAGACAGGATACA
AGTACAACCAGATGACATCCTACCACAGGATGCTTGTACACAGAGTTGCT
GCATATTTTGGACTGGACCATAATATCGATAACACAGGAAAAGCTGTTGT
CATTAGCAAAACTCCCTCTTCAagagtTCCTGAGACCAAGTTCCAAGCTT
ACTGCAGTCGAGAGTATACCGATGAAGAAATTTCATCACCAAAAGTGATT
CTTCCACGGTCAGCGTCAACAGATGAACCAGGAGCTGGCACTCCAATTAA
TtcTTTTGATTCTGAAGTAGTCGCTTATTCTCCAAAACATACTGCAAGGT
CGACTGATTCATCAGTGTTGTCTGAAAAAGAAGCTGCTATTGCTGTTGTT
GCAGCCAGGACAGGAGGTAAACCTGGCTCAACTCCCAGTGTCACAACAAA
ACGAGTGAAACCATTTGAATTACAGCTTCAAGGCCATCAAGGACAAGGTA
Run BLAST on NCBI

transcript from alignment at sc0000276:285251..295549-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017808 ID=TCONS_00017808|Name=TCONS_00017808|organism=Clytia hemisphaerica|type=transcript|length=10299bp|location=Sequence derived from alignment at sc0000276:285251..295549- (Clytia hemisphaerica)
AAATATTATTGTACAATCGTCAATGAAAACAATCGCTTATCTATCTGGTT
TGGAATCACAACACTGGCAACAGATTATTTGGTGATTGATTGAGTGTTTC
TTCTCAAATGAGAATGCAGCTTAAACCAGCCATTGAAACCCAACAACAAA
CAAAATCGTGTGAAATATGGGAACAGCAAAATAATAAGGTATTACCTTCT
TAGTTTTGGTCTGTTCCTCTAAAGAATACTGCATTATAACACGCATGCGT
AATTTGTCGCTCTTTTAACCATATGTAGTTAATTCCCGTGATAACCAAAA
AGGAATGAATACGTAGGAGTGGTACAGTCACTTTCGGTCGAAATTTGTCG
TTCTTTATGAATTTGTCGTTCTTTTTGTCTATTTTTAGTAAGATTCTTTG
ATAAACCCCCTTAGGAAGGTTTGGTCTAAAATAGTACTCCATGTTTCTTT
TGCAATTTGCTGGAAGATTGCAAATAATCATCGATTTTTTCCAGTTTAAC
TTTGCCTCTTTCGATTGTGACTAATAGTTTTTATTTCGGAATGAAATCAA
ACATGTTTTTCTTTTTTCAACTGTTTTGTTCTCGCAGAATATTTAAAATG
TGTATATAAGATAGTGATAGACAAAAGGAAGTACTGTATTGAATGCTCTG
TAGCAAGCTCTTATCGGCTGAGTCCTTCCTCTAACCTCCTTCTCTGTTCG
TGGAAATATTCGTAGTTGAATACACTTTGTTTTTAAAGGTTTTATTTTTA
CATAAGTGTTCCCGTTTCATACCAGACACATATTTCATATCAGGACGGTG
TCTTGCTATTGTTATGTTATGCTGATATAAGCAAAAAATGTTTTTCTGTT
CCTCTTTCTGACCAATCTTGCTCCACATCCGTGTCAATCCAATGTGAAAA
AGCTCGTGAATTAAAATTATGAGTAAGCAAACGACATCACTCTTATTCAA
AAACAAAACCTTTAAAAGTCAATGGTCGCTTATCTTGCGTGATTGCGTGT
TCGCGTGTTCGCGTGTTCGCGTGCTCAACGCGAACGTCGTGTGATTGAGC
AGATTTGACAATGTAAAGGAAAACTTGATAATATAGTCGTATAGGATCAA
CCTAGCTTTGATTTGAACGCATCCTTTAGAATATTCGCTTAGATCTCTCT
TGGTTATCAGACTTATCGAATGTGAGTCCATAACCTGAAACAAAGTCTTA
TTTAGTATATATTGAGTAAGATGAAATTATAGTTTATCAACTAACTATAA
TAATATGATTTCACGATGTGATATTATTCATATTGGATCAGATTTTGGTG
CCACTTATATTTTTTAAAGTCTTGACTTTTCTCTTGCAATTTTTTGTAAC
TCGACTCTTTGCTTGCTTTAGAGTTTCTAGGAAAAAAGGTCGAAAGTTGC
TTGATACCAAACAACGAACTTGATCGTTGTGGTCTCATACGATACTTCAT
AGTAACCCTTTCATCCTTCGCAATAAGAAGTTTTCTTACAGCCGACCAAT
TTATACCATTTTGATAATTGATCTCGTTTTTTAAAGTGTGAAAGATGTTT
AATGAAATTTATTTTGTAACATACCTTTTTCACTCTCTCTCTTTAATAAG
TTATAATACAGTAATGACATGTAAAACTTTATAGTTGTTCTAATCGGGTT
AAAGGATTTACTTAGTTGGTCATAAGCAATGTTAAACCATTCAATGTATC
TTTTGGTCAGATTCTAATTATTTTGCATGTACATGATAGGAAATAGTTTA
CAAAATTTGGTCCGTTCCCTCCGACTCATTTCAATACTTAATTCATTGCC
ATAAAACATCAATGTTCTTCTACCTTGCTCAAAGTTTTTGTTGTTGAATA
TTATGGATATTTTGTACTTTTGATTTTACACGCTTTTTATAAGAAAACTC
AAAATTTTTGAAGCCTTAGGATAATCATAACTTTTTGAGTTTTAAGCCTA
AAAATGTTCTTATCATGTTCTTATGTTCACCATTTTTTGCGTACTTTCAT
ACATTTCCCTTAGAAATTGGATGTTTTTGAGTCAATGAAGCTTTAATATG
TTCTTAACTTCTTCTTAAAATTTTGGCCATCGAAGCTTTATGTTTTTATA
TAGTTTGTTCTTATAAAAATCGTGTATATGATAAAGTTTTCCACTATTAT
AGAGGGGCCTTTCTTATAATCGTTTGATTTGCTAATAAAAAACATACCAG
TCTATAACACTGAAAGGTTTACGCTCTCTTTGAGAGGATAATGTTTTTGT
TAGCAACTGATTAGCATAAACTCTTTGATAATATGATACATTAAAAATTT
CTTGAAGACTTCTTTTCTCTATACTTCCAGAGAGATGTCATTTTGGAAAA
ATCTCAAATTTCACCTTTCACTCACTCTTGAAAAACAAAAAAAATTCAGT
TGGTTTAGACGAAGATAATTAGCTTTGGAACAAACTTCTTTTTTTGTTGT
TGTTCTTGTGTCTGCTCCTCAATAGTAACTGTTACAATATAGAGTTTCCC
TCCATGTTATAGCAAATATTAAGTTTTACTGTACATGATATGTCAGGAAA
TTAAGAACATGGAAGTTGTTCTCTCTTCGTTCGTTTGTTTTGCTTACGTT
TTTATTTTAAAGACTTTCGTTTGCGAGTGATATATAGTTCAGTTACTCTG
GATAACATAAATTTTATTCTTTTTGGTCTTATACCAAATATTTAGAAAAT
GTTAAACTTTAACCTTGTACCAATACTTTTTAGAATACTCTGTCTAGGAA
TGGAAAGCCATCAAGCATCATGAAAGTCTTAATTGTCACTACTACCATTA
CTTATAATAATATGGAAGTTAATATCTTTTGAAATTAGTTTGTCTGGATG
AAGCTTCCATATTTCTGATAGCACATACAGTACTAGCACAATAAGTTCTA
CACGTTTTTTTATTATTATAAGGAACCTTAACTTTCCTCCAAGGCTGGAG
TTCGTTATTTTTCCAGAGAATTTCCATTCCAGCCTCAAAGTTCCTTATCG
AGTTCCTTATTTACTTAGCTGCCAAGATTGGATTTGCTAAGTATGTAACT
TATGTATAAGTATAACAATGGACTACAATAAGGAAAAAGATGTTTATTGA
ATGTTGCTCTGTCCACGTTTTGTCATATTTTTGTTTAGGGTTTTGTAAAT
GCGTGCAAGTTCAAGTTTAACTCTCTGTTCCTTAACTTGTTTTCTTATTC
TCAGCCTGACCAGTTCGTTATAACAATACTATAATTTTGGAACCATTTTC
AGCCTCAAGTTCCTTATAAACGTGTTTCTGAAAATAAAAAAAAACGTGTA
TGTATTACTGTAACTGTATTTTGAGGGGTATTGCTACTACTACTTAAAAA
TAAATCATTTTTACAGAGTGTTAAACTTGTCTGATTACTCATTTATGGTC
TTGGGTCTTATGGTAGGAAATTAAATAATCTTTTCCATTCTATAAAAGAA
AAGCCAACATGTAACATGCTGCATCACGTTGATAGTCTTTGATTGAAAAG
TCGAATCAAGTTTCCATTGTTCTTAATTAGTTAATTTAATAATAGACAAG
TAAATTAATTTTCACTCATCTTGATACTAATAATGGTTTCTATAATACTA
TGCCAAGCGTCAGCATTTTGTCACTTAATTTATTTTTTGATAGTTACAAA
TCAAACAACTTTTTTTTTCTAATTTGATGACTTGTTTCTTGGAAAGATTT
TTATTAATGTGTGTAGAAATGAGTTGATGTTCTTTCGGTAAGTAATTGAA
CATTTTTAAAGTTCTCCTTTTTGGAAAATTTTCAAATTTCGATTTCGTAA
GTAAAGGACAGTAGTTGCTGTTAACTAATTTGATTCCCCTGAGAGTAAGC
TTTGACTGATCTAGAAATAAAAAGCAGTTGTTTTTGGAAAAACTTTCAAT
GTTTAAAGGTTATTTTTATAGATTTGTACAAATTTGAAGGTGTACAACTG
GTTATATTTTTCACATGTTTGTTAATAATTGTTGTGTTAATTAATTGTGT
GTATATTTAACACATGTTGGTATAAATTTCTATTGACTTTTTTTCTTCTT
GAGTTGTTTATTTGCCCTTGCTTTCTTAATGTATGAATGCGGTTTTATTT
GATTGTAAAATCCATGGCATTTTTCGTCTGGACTTCTCTTCAATGTGGGA
GCTGTTTACATTATGAGTAGTTTTGTTTGTTTGGTCCCTTTCGNCTTCTC
TTCAATGTGGGAGCTGTTTACATTATGAGTAGTTTTGTTTGTTTGGTCCC
TTTCGCTTTTTTTTCTTTTAATTTTCTTCTCCCGTTATTATTATATGTTA
GTTTGTTGTTCTGTGAACACAAGCTTTCTCAGAATTTTATATTTTTGTGA
GTTGAAGATTATGTTTTTGATGATGTTTTAAAGAAAAGTTATGAGCTATA
AGAAAGTCTGAATTATAATCTTAAACTTTTGAAATTATATTAATACTGCA
ATTATATCAAGTCTTCTTGAAAGATAATATAAAGTTATTCTTTCTTCATA
TCATCATATTTTTGACACTAATTACTTTTAATAAGAGCTTCAGATTTGAA
CTTGATTTAACAGTAAAAAAAATTAGATTTCTAGCTTTTTAATTGGACAT
ACTTATTTCTTTCGTTAAGCTTTTGATAATTTTTTTCATTAAAACTTTAG
CTCAGGAGTAAATTTCATCCTAATCAGATATTAAACACACAGTAGAAGAC
TTTAGGTTTTGGTCAGGTATGGGTGCCCATGAATCTGGCAGATATTTGGA
CACAAACAATCCTCAGAAAAATCTTTGAAATAATAATCCTAAACCAAGAC
ACTTTTTGTCTTTCTAGGATTTGGTTTAGCTATACTTGGCTCACTCTGTA
TGTTTCAATTTCTTTTTGTCCTTCCTTCATCTTAAGGTGAATCAACAAAA
CAACATGGCAACTTTGACACAACCGGTATTATCTAATACATCATTTTCAC
CTATCAAAACAACAATGGGAGATACCGATATCATAAATCAATGTGTCACA
ATGGCAAAAATTTCTAAACCACCAAGCTCACCGACCAGTGCAAAACCTAC
CGAAACATCTACGAATGAGTCACCAAAAATGAATGGTACATTGTCACCTA
AGCCATACACAACATCACAGGTATTAATAAAGGTTTTTCAATGAATCGTC
CAGATTTGAACTGAGATTCAGAATCCATCTTCACTCCAAAGAAAGTAGAA
TACTTTGTAAATTCAATGATCGGGCACAGTTTAGAATTTCAAACCTTCGG
TCGAAAACAGTGGGAGCATCAAAGTTAAATAAAAAAGTCTACAGCTTAGA
TACCGAGGCTAATCTTACCCTCTCCCTTCCTTTCTGGATTTGGAATTTTT
TAGTTTTTATAGTTCATTAATTACTGAGTAACAATGGTAATTTTGCAGCT
TTTCCTGTTCTGTTACTTACCCTTTTTACTTTACAGAATAAGCCACCAAA
GATAAAATTATTGAATAGAAGTGCAAATGTAGCTAGTCCAGTTGCAGACC
TCAATGGGGTGAGTTGTATTTTTTTAAAGACCAAACATATTCTTTTTGAC
TTCATTTGCTACATTCAATCTTTGAATCAATCAATCAATCTGAATCAATC
CATCATTCGACCCTTGCCATCATGTCATGTTTTAAAAATGTTTTGTTTTT
CTTTAGATTGAGGATAATAATACTCAAGATATTCAAGAGGGTGAAACTCA
AAAAGAAAAAGAAGAAGCTGTAGCGGTAATGGAACCTAGTCTAGAAACCC
CTGAAGATATTGTTAAAGTCCAACAGATAAAGATACAACCAGATGTGACG
TCACAAACACTTCACCGCCCGCCACAACAACAAACGCAGACACAACAACA
AGCATATAATGTGGAATACAGTTCATCTCCCTCGTCCACAACCTCTTCGT
TGAACAGAGGTAAGTACAGTCTGTATTGTTTGAGATGTTTTGAGATGTAA
TAACTCACCTCCATGCACAACCAATATCTATGAAGAGGGTGAGGCACAGA
TTATAGACAGTATAAGCAGAGTAAATCTGCTTGACATTTTTGTCAATATT
TTTATTAACATTTTCAGTCCTGGAGTTTTCACGGCTACTTTCTCGGAACT
AAAAATTACATTTAGAGACTACCTCAGTCAAGTCTAGATTAGTTTTAAAC
CACAACTGTTATGTTTCTAAAAATTTTGCTCTTTTTTTCTAAACGATAGA
GGAGCATGTAAAAATCACATTTTTTAGGGCCTACAGTTTTTGCCTGTAGA
AATTTCCAATAATCTTTATGTGAACTAAACTTAGTATTCGATCATACATT
TTGCATGCGGTTTTCTGCACACAGCATGCTATATTATTTGATTTTAAAGT
TATATAGAAGATTCTCTATATTTTGCTTCAAAAAATTAGAGACCATAAAG
AAAGTAAAGAACCGCTGTGTGGTTCTCTGGAAAATAACAAAGGGTCCAAA
GGAACCGCCGTGCGGTACCGCGGGACTGAAAGAATTAATAGAATGACAAT
GAAATCAAAAGCTAGAAGAATTGTCATGTTGTGCAAGGAGATCTACCTAT
GTATTCAAATTTATTGGTCCATGTATTAGTTGATTTGTTTGGTTACAGTC
CAACCCAACCCTGATCTATCTAAATTTAGTTCTTCAGTGTTATTTTCAAT
CAAAGATTTTGAGAAGTTGAAATCCCTTGTGATGAAATTGCATTCAAGTC
TCCTATTCTCATTGTCTTTGAAGTGTGAAATTGCTATTAATTATTAATCT
TTCGCAACGCTTCATCCCCAGATCTTAAGAATATCTTAATTTTGTTTAAT
TTTAAATTTTAGAAAACTCACTGGACTATAAAGATTCAACTGGTGTAGAT
TTACACGACTTCATGGTAAAGACACTAAAAGAAAACCCAAGGTAAAAAAT
GATTTCTTATTCTAAAAATCTTTATGCCAATCCAGAAGGTTATCTAGTTG
TTTGTATTTCTTAATTTCACTCAATCTCTCAAACCTGTAGTGTAAGTATA
AAAAGTTTATTTGAAGGACACTTTTCACTAGACTTTTGGTATTCCATTTA
AATCTATGTCTTGAAATGATGAAGATTTTATTTTATTTTAGCTTACCTTT
TACTTGACATGTATTCTCCCCTTTATCTGCCCCTCCTCCCCTTTATCTGC
CCCCTCCCCTTAAAGTTATTATCTTGGTAAATGTATGATTTCTACCTTTC
CTTTCTTATACAGGGACAGGCTAATGCTCTTAAAATTAGAACGAGATTTC
ACAGAGTTCATTGAAGATAAAAACAAGACAGGATACAAGTACAACCAGAT
GACATCCTACCACAGGATGCTTGTACACAGAGTTGCTGCATATTTTGGAC
TGGACCATAATATCGATAACACAGGAAAAGCTGTTGTCATTAGCAAAACT
CCCTCTTCAAGAGTGTAAGAAAATATTGAAAATTTAGAAATTCAACTACA
AACATTAAGTTGCAAATAACAATATATCTTCAATCTTTATTGAGTTGTTT
TGAGATATGCCAAACATAAGATACAGCTAAATTTCACCAAATTATGATAA
AATGGCTTTCATAAATAGACTCTTTTCCAATTTCAGGTATAAGATTTATC
GAGAGAGAGTTTGCTTTATAGGTTTTGAGCAAACTTTAATTTTTCTTATA
GTCCTGAGACCAAGTTCCAAGCTTACTGCAGTCGAGAGTATACCGATGAA
GAAATTTCATCACCAAAAGTGATTCTTCCACGGTCAGCGTCAACAGATGA
ACCAGGAGCTGGCACTCCAATTAATGTAAGATTTGTTTAGTAAAATTCAA
GAAATAGTTGAAATCCTCTAAAGGACAGCTTTTGAGCTGAGAAACTTTAG
GCTCTTGAACAGTATTGCATCAGACCCACCTTTTAGGTTTTCAAAATATA
GAGCAGAGGCAACTCAATTCTGTCTTATCAGGATTTTCCACAAATGTTTT
AAAAATTCAAATTTTTAATCTTAATTTTTTTATAGCATAAGTCCTTCTTA
ACCCAAACCAAGTCATACTTTAAATATCATCAAAAATATTAACTAAAGAT
TGAAAATAAGGGAAGAAAGAGAAGCATTAGTAATTATCTATTAACTGCAA
GAAGGGGAAGCTGAAATTTTGCATGAAATGATTAAAATTTAAAAAGTCCT
GTTTAAAAAAGTAACCTTTTTTTCATGATGAAGTAATCATTGATAGTTTT
TTTAGTGCTACTCACTTTGGTATTAAAAATAGATGACTGAATTTAGAAAG
GGTTACTTGTTTCTTACTTCCTTTGAAACACTGGTCTATTTTTAGTCATA
TTGTTCTTAAATGGAGCAAGATTTGTGTTTCTGTACGTCCACAAGGGATA
AGGTCCACTCTGAGACAGATGTTTTCTTCTTTTTATCCCATCCTCTCCTA
NAAAAAGTAACCTTTTTTTGATGATGAAGTAATCATTGATAGTTTTTTTA
GTGCTACTCACTTCGGTATTAAAAATAGATGACTGAATCTAGAAAGGGTT
ACTTGTTTCTTACTTCCTTTGAAACACTAGTCTATTTTTAGTCATATTGT
TCTTAAATGGAGCAAGATTTGTGTTTCAGTACGTCCACAAGGGATAAGGT
CCACTCTGAGACAGATGTTTTCTTCTTTTTCTCCCATCCTTCTCTTTTGG
TTTATTTTCTTTCTCTCTGCTGCTGATAACCTTAAAAACCTTATTTATGT
TTTTTATTTTTGCAAAGAAAAGAGATATAATAAAAGAAGAATAGCTTTAA
GGAAGATCAGATTTGAAAATTTTATTTTGGCAATGTAAGTGGGAATATAT
TTTCCATTTTTATTTATTTCCTTCTTTATCATTGTTTTCTTTTTAGTCTT
TTGATTCTGAAGTAGTCGCTTATTCTCCAAAACATACTGCAAGGTAAGTC
TTCTGCTCTTTATATGGTTGTTTTTTCAGAACTTGATTCCTCTCTCTATT
ATAAGATTGTAATCAAGACTTTTGTGCTCTTGTCAATCATTTCATTTCAT
CATTTCTGTAATAACTATATTTACTCTTAAGTTCAATACAAGAGGAGAAA
ACTGATTTAAAAAATGGTCATATTTTTTCAGACAAAGCTTCCTGATCAGT
CTGGAACTAAATAATCACAACTTTAAAATAATATTCAAGCTTCATATATT
AAATGAGCAACAATAAAGAAATTTTATAATCTTATAATCTCAATAAAAGA
GGAAATCCAATCTCAACCCCACTTGTTCTGGAGACAATGAAATATCTATC
ATGCAAAATGAATTATTGAAGTATCATTTTATGTCGATCACACCCTTTTC
TGTAAAAAAAGATGAAAAAATGTAAATGTCAAGCTATTGCGATTTTTAAG
CTTTGGTCCGAAAAGTCATCTAATGTAACATTTACACTGAGAAATTTGAA
AATAGTCTGCACTATCTTTATAAGTAAGGTATATGCTATATACACCTGTT
TTAATCATAAAAATATTCTCTCCTTTTTTAGGTCGACTGATTCATCAGTG
TTGTCTGAAAAAGAAGCTGCTATTGCTGTTGTTGCAGCCAGGACAGGTAT
TAGTGATAAACATTTTTCTGTATTCTCATAATAAGGGTCAAATAAGAAAG
GAAAAGTGAACCTCATCAAGTAAACATGAATAGTGGTGATTTGCATCTCA
ATTAAAAAATGTCAAGAATTTTATACTTCTAGCTAAAGCTTTGAGCTGTT
GGCGTTTGTGATTTTGAACTAAAGGTTGAATTACTTTATTACTTTGAATA
AACGCCCCTCCCTTATAATAAACGCATCCTCTAATAAACACCCCTCCTTT
GAGGAAAAGTCATTAAAGAACATCCCTCAAATAAACGCACCCCTCCCCCC
TAGGAGGGGCATTTATTTGAAACAGGTAGATGTAAGGCAGTATAATATGA
AGGAAAACTGAGATATATGATAAAAATTGTATCCTTTTAGTATTCAAATT
GATGTTGACCCGTTTCTACAGCCGAAATTGATATATTTGTACTTGATAAT
TATGAGAAGACAAAATAAGGTTTCAATTCAAACTATTAAAGTGGCCTCAG
TTATGAATTGTTTAATAAGCGCCCCCTTCTTTTAAACGCCTCCCTCAGAT
ACCCAGGGTATTTATATGAAGTAAATACGGTATATTTATGTACTAGTACA
CTTTATTCTTACATTTTAAATTCAATGTTAATAGTAATTTAAACCTTTCT
TAATTTATTCAGGAGGTAAACCTGGCTCAACTCCCAGTGTCACAACAAAA
CGAGTGAAACCATTTGAATTACAGCTTCAAGGCCATCAAGGACAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009983XLOC_009983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017808-exon-sc0000276-1575043694:295362..295549TCONS_00017808-exon-sc0000276-1575043694:295362..295549Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:290430..290663TCONS_00017808-exon-sc0000276-1575043694:290430..290663Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:290042..290113TCONS_00017808-exon-sc0000276-1575043694:290042..290113Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:289641..289893TCONS_00017808-exon-sc0000276-1575043694:289641..289893Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:288659..288737TCONS_00017808-exon-sc0000276-1575043694:288659..288737Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:288136..288336TCONS_00017808-exon-sc0000276-1575043694:288136..288336Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:287775..287898TCONS_00017808-exon-sc0000276-1575043694:287775..287898Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:286657..286703TCONS_00017808-exon-sc0000276-1575043694:286657..286703Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:286004..286068TCONS_00017808-exon-sc0000276-1575043694:286004..286068Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1575043694:285251..285337TCONS_00017808-exon-sc0000276-1575043694:285251..285337Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:295362..295549TCONS_00017808-exon-sc0000276-1510915933:295362..295549Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:290430..290663TCONS_00017808-exon-sc0000276-1510915933:290430..290663Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:290042..290113TCONS_00017808-exon-sc0000276-1510915933:290042..290113Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:289641..289893TCONS_00017808-exon-sc0000276-1510915933:289641..289893Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:288659..288737TCONS_00017808-exon-sc0000276-1510915933:288659..288737Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:288136..288336TCONS_00017808-exon-sc0000276-1510915933:288136..288336Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:287775..287898TCONS_00017808-exon-sc0000276-1510915933:287775..287898Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:286657..286703TCONS_00017808-exon-sc0000276-1510915933:286657..286703Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:286004..286068TCONS_00017808-exon-sc0000276-1510915933:286004..286068Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1510915933:285251..285337TCONS_00017808-exon-sc0000276-1510915933:285251..285337Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:295362..295549TCONS_00017808-exon-sc0000276-1491911889:295362..295549Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:290430..290663TCONS_00017808-exon-sc0000276-1491911889:290430..290663Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:290042..290113TCONS_00017808-exon-sc0000276-1491911889:290042..290113Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:289641..289893TCONS_00017808-exon-sc0000276-1491911889:289641..289893Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:288659..288737TCONS_00017808-exon-sc0000276-1491911889:288659..288737Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:288136..288336TCONS_00017808-exon-sc0000276-1491911889:288136..288336Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:287775..287898TCONS_00017808-exon-sc0000276-1491911889:287775..287898Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:286657..286703TCONS_00017808-exon-sc0000276-1491911889:286657..286703Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:286004..286068TCONS_00017808-exon-sc0000276-1491911889:286004..286068Clytia hemisphaericaexon
TCONS_00017808-exon-sc0000276-1491911889:285251..285337TCONS_00017808-exon-sc0000276-1491911889:285251..285337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:285251..295549 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825942	1.24755	0	0.757658	5.09949	4.90179	26.8964	31.2087	8.94766	7.94176	4.67424	6.57698	7.74252	10.2905	7.49507	13.3726	7.74523	6.35642	6.67035	7.92332	6.81532	4.42954	4.26979	6.18551	12.3348	18.3369	8.90858	4.12934	1.48952	2.64203
Blast
[Close]
BLAST of TCONS_00017808 vs. Swiss-Prot (Human)
Match: R3HD2 (R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.593e-41
Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 3 
Query:  738 LNRENSLDYKDSTGVDLHDFMVKTLKENPRDRLMLLKLERDFTEFIEDKNKTGYKYNQMTSYHRMLVHRVAAYFGLDHNIDNTGKAVVISKTPSSRVPETKFQAYCSREYTDE 1076
            L+R++S +Y DSTG+DLH+F+V TLK+NPRDR+MLLKLE++  EFI D N    K+ QMTSYHRML+HRVAAYFG+DHN+D TGKAV+I+KT ++R+PE +F  +   E   E
Sbjct:  138 LSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTE 250
The following BLAST results are available for this feature:
BLAST of TCONS_00017808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
R3HD23.593e-4160.18R3H domain-containing protein 2 OS=Homo sapiens GN... [more]
back to top