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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017799 ID=TCONS_00017799|Name=TCONS_00017799|organism=Clytia hemisphaerica|type=transcript|length=780bp
CAAAAAATccacttttataaaaaaacatcataGCATtgattttgaataaa
aaggaGTATGGAcatttttcttttgtgtttCTACGGTAATTGATCATTAT
GTCAAATTGCTCTTTTCTTATTCATATGCAAATGAGCGTCATTCCATTGT
TTCACAGTCCTATACACGAgagaatttgattttaattgcAATGTCAAAGA
GCGCAAGACAAGTAAATTTATTTTAGCTCAAATACACGCTACAGGAGACA
AGGAGCTTAGAGAAGGGCTTTTGTATATTGgtgctatttttttgtttgtg
tgTGGAAAGGACTCACATTTGACGACTCTTGTATAGAACAAGAATTCTAA
TTAACAGAGACACATCACTGACGCTGATAATCTATTTAATTCACATCGAC
TGCAAAATATTGAAGGAATTTGAAGCAAAAGGATATCCACATAGAGTGAA
CATCGAGTTTCATTTGCAAGAATGGTTGTAACAAGCGATGAAAAACCTAG
CGATGCTATTTCACCAAGTTTAGCAAGTGCGGCAATGAGTTTCCCACCGC
CACCACAATTTCAAGGACTACTGCCACCTTCTGGGTTGAAAATTCCCCGA
TTTGGTGGAATGATGATGGACGATACAATGAAAATGAATCCATTCGGATT
CTCGTTGCCTTTTACAACGATGTCACATGTCCCGTATTTGAAACCGGTTT
CCCCGAAACCAGAAGATCAATCTGAAGATGATAAAGCTGGAAGTTCGGAT
GatgAATCAAAAGATGGTGATGATAAAAAC Run BLAST on NCBI transcript from alignment at sc0000276:163474..166684- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017799 ID=TCONS_00017799|Name=TCONS_00017799|organism=Clytia hemisphaerica|type=transcript|length=3211bp|location=Sequence derived from alignment at sc0000276:163474..166684- (Clytia hemisphaerica)
CAAAAAATCCACTTTTATAAAAAAACATCATAGCATTGATTTTGAATAAA
AAGGAGTATGGACATTTTTCTTTTGTGTTTCTACGGTAATTGATCATTAT
GTCAAATTGCTCTTTTCTTATTCATATGCAAATGAGCGTCATTCCATTGT
TTCACAGTCCTATACACGAGAGAATTTGATTTTAATTGCAATGTCAAAGA
GCGCAAGACAAGTAAATTTATTTTAGCTCAAATACACGCTACAGGAGACA
AGGAGCTTAGAGAAGGGCTTTTGTATATTGGTGCTATTTTTTTGTTTGTG
TGTGGAAAGGACTCACATTTGACGACTCTTGTATAGAACAAGAATTCTAA
TTAACAGAGACACATCACTGACGCTGATAATCTATTTAATTCACATCGAC
TGCAAAATATTGAAGGAATTTGAAGCAAAAGGATATCCACATAGAGTGAA
CATCGAGTTTCATTTGCAAGAATGGTTGTAACAAGCGATGAAAAACCTAG
CGATGCTATTTCACCAAGTTTAGCAAGTGCGGCAATGAGTTTCCCACCGC
CACCACAATTTCAAGGACTACTGCCACCTTCTGGGTTGAAAATTCCCCGA
TTTGGTGGAATGATGATGGACGATACAATGAAAATGAATCCATTCGGATT
CTCGTTGCCTTTTACAACGATGTCACATGTCCCGTATTTGAAACCGGTTT
CCCCGAAACCAGAAGATCAATCTGAAGATGATAAAGCTGGAAGTTCGGAT
GATGGTAAGAAAATATTTGAGTTTTATTTTGAAATTCTTTTTATTCTTGT
CTAAATCGTAAATAAACTGTAAGTTGGTCTAATGTCGACATCCCTCTTAT
AATTTTTTTTGAATTGTGAAACAAGAATATATTTACCAGTACATCGTTTT
AAACTGGTGTAATAAGGCTAACTATATAATACAAATTTACAGAGTTAAAA
ATGTTTGGGTCAAATATTTACAGTTAAAAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
TAAAAAAAACTAGAATAAAAATATAGTATACATACTAAGGATATTTCCTA
AGCGCCAAAAATAGGGAAGTAAATGAAAATAAAAATATATTTAGATTTTG
ATATTTGTTGTTAAGAGGCTTGTTGATATATCCTCGTTAATGTTCAGGTC
TTTCTTACAGAAGACTGATCTGCTACCACGTAGACAGATACCTACAGCTT
TGCAAAGCCCAATGGATAGCTTTTGCCTCATCCAGGTGATTACTTCACTG
TATGGCTTGTCCTGTTTGCTTGCCATCATTTCGGCCAAACGCGAGATAAA
TTTTGTACATTCACGTCCCATGCCGCCAGTCGCAGAGAAGACCAAAGGTG
TGAACGATCCATGTTCAATCTCTAACACACGTTGGTTGTATGCTCTCTTC
TTTTCCCGTTCGTTTGAATCAAAACACTTCTTGAGGTCCTGGGAGACATG
TCGTTTTGCAAGTGGGTTAAAAACCCTTATGTCGAAATCGCTTGTACAAA
AGATTTCTCCTCTCTGACCGCTAAGCAAAGAAATATAGTTTCCATCAGCG
ACTCCAACCCTTCTACTATTCCTATCTCTAAAGAAGGGTGTCGACATTAG
ACCAAGTTACGGTATAGGGTGTAAAGCATAAAATACCTCAATTTTGCGGT
AAAAATAAAGGACACAACAAGAACAATTGGAGACTTAAATGTGTCAGAAA
GGTTCATTTTTTAAAAATTTTAATAATTATTTCAAGAAAATTATTGAAAA
AGACCTTGGGAAATAATTCAAACGGCGTAAAAATAATGATAATCTTTGGA
TGACATTCAAACGCTAGATTTGATTTTTATATTAGGCGTAGAAGTATTTG
AATTTAAAGATGTTGTTAAGAATTGAAAATCTCAAAGACTGTGAAATATT
TTTGTACGATATCATATGTCGCTCGCATGCCCAATTGGGACTTGATAAGT
GCAATGCAATTAAGATGAAAGAAAGACCGCTAAATTACATCGGGTTATTG
TTTAATTCACATCACTAATTATCGCCGTTTTATTATTCGAGAAAATACGA
ATTCAAAAAAAAAATTGTACAATAAAAGCATAAAGCACTGTGAAAGAAAA
TCTTGTCAAAAAAACTTGTCTCACAAAAATAATTTTTGAATATATTGCTG
TGTTTATTTCAAAAATGACAATATTCAAATTGCAATCTATTCCTGTTTTC
ACTCTAGCATTCCTTATTTTCCTAAAAACTTAATATATAAAATTAATATT
GGATTTCAACTTCTCAAAAGTCTTCGTAAATAATTCAAATTCAGTTGCAA
TTCAACGTAAATGTCTCGACGTTTATGACCGTTAACAAGACCTTGTGACG
GGACTTTAATAAAGTAGCTTGACAGAAAATTTTCTTCGACGTGACTCTCC
AAATTTTATCTAACACTGATAAAATTGACTTAATTACCCATGGGAGGTCT
TTAAACCATTCCATCATCAAATTTAAGGAGGTCTCTCAATTTAACTTAAG
CAATATTTTCTTGGCATGGCAATCACTTTCGTTTTCTATTCTAAAATTTT
CTTCTTCTTTCGAAACCTACATCTTTTGTTAACATGTACTACAATAACAA
AATTTAACAAAAATCCTTAAGAGGGAACATCTTCTTCGGCATAGTCAAGT
CACTAGTAAAATATCTTACACGTTTTTTTTATAAGAGCATACAAAAGTTT
CGAAACCTTTGGATGTTTTAATTTTTTTGAGTTTTAAAAATGTCTAAAAA
TGTTCTTAACTTGTTCTTAAGATTTTGGCCATCGAAGCCTTGTGTTCTTA
TAAAAAACGTGTAACTGAAAAGCCTCTTCTGTAAGTTGTAAAACTGAAAC
TTTGAAAATAATTTCGCCTTGTTTAATCTTTCTAGAATCAAAAGATGGTG
ATGATAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017799-exon-sc0000276-1575043694:165931..166684 | TCONS_00017799-exon-sc0000276-1575043694:165931..166684 | Clytia hemisphaerica | exon |
| TCONS_00017799-exon-sc0000276-1575043694:163474..163499 | TCONS_00017799-exon-sc0000276-1575043694:163474..163499 | Clytia hemisphaerica | exon |
| TCONS_00017799-exon-sc0000276-1510915933:165931..166684 | TCONS_00017799-exon-sc0000276-1510915933:165931..166684 | Clytia hemisphaerica | exon |
| TCONS_00017799-exon-sc0000276-1510915933:163474..163499 | TCONS_00017799-exon-sc0000276-1510915933:163474..163499 | Clytia hemisphaerica | exon |
| TCONS_00017799-exon-sc0000276-1491911889:165931..166684 | TCONS_00017799-exon-sc0000276-1491911889:165931..166684 | Clytia hemisphaerica | exon |
| TCONS_00017799-exon-sc0000276-1491911889:163474..163499 | TCONS_00017799-exon-sc0000276-1491911889:163474..163499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:163474..166684 - |
Blast
The following BLAST results are available for this feature:
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