TCONS_00017794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017794
Unique NameTCONS_00017794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017794 ID=TCONS_00017794|Name=TCONS_00017794|organism=Clytia hemisphaerica|type=transcript|length=2224bp
CATCGGTTTCCCTTGATACAAGAGTAGTTGGAACATGGGTTTCCTTTGAT
ACAAGAGTAGTAGGAACAGGGGCTTCCTTTGAGACGAGACTAGTGGGAAC
ATTGGTTTCCTTTGTGGTAGAAGAAAAAAGTTCTTGGTTTTCCTTTGAGA
CAGGAGAAGATATTTTTCGGATTTCCTTTGAAGTTGGAGTATTCAGAAAA
CCGGTGGTTTGTACTTTTTCTACAATATCGGGTTGGTTTTGGATTGTAAA
GTTATTATAAATTGTGATTGGTCTTCGACCATCGACAATTTCATAAGGCT
CATCATACACTTCGTCACTTTCTGACGATTCGCTTTTTCGTCTCCTTGAG
AAAGCTTTGaaaggaaattttgattttttactgtccttattgtttttatt
gttttgtttggGTTTTGTTGAGTTGTTTTTGTTGTCTTTCGATTTTCCAC
CTGTTCCAGTTACTTGTTCTTGGCCGTCACTCGGTTTGGTATTTAGAATA
AGTTGTTTTTGGTTTATGTTGTTTTTAacgtttgttttttcttcagtATT
ACTATCTTTGTGGATGTTTTTAGAAAAACCTGTGATCTGTTTATCTTGGT
TCACACTATCCCTTTTTTGGTATGGACTTTCCCTTTTTTGGTATATATGT
TCCCTTTTTTGGTATATATCTTCCCTTTTTTGGTATATATCTTCCCTTTT
TTGGTATATATCCTCTCTTGTTTGATAGAGGCTTTCCTTATTAGCTTTTG
TAGATAAATCACTTTTGTGTAGATTTTCAATGTACTGAACGATATCTAAT
TGGCGGGGTGGTAATTTGTAAGCTGCTTTAGGTTGATGTTTCTGACCAGA
TTGTACATTTTCCTCTGTGATTTCATTATAAATCACTTCAGGCGTTTGAC
CTGAATGCTTAACGgattgtttttgatttgatttctcTGAGTAGCCTCTC
GTAGACAAATTATTCATGCGGTGGGCTTCATTAGTCACATGTTTTGTATT
GTTTTGTGCCTGTCGATACAAATTCTCCTGAATGACTTCTGATCTTTGAT
GTTTATCTGGGTGTGTATTTCTTTGGGTATGTGTAGTATTGATGTCGTAG
TTTTTGTCAGTATAATTGTCATTCGGCTCTCGGTAATCTTGCCGTGAGGT
TTCCGACGATTTAACTTGTTTTGAGTTTTCTGTGTACACCCTTGTATTGT
TCATTGGGTAATTTTCATTGTACTGTTGTCTAGTGTCGATTGGCTCTTCT
GGATAATGGTGATGATTCATTTGGTGTCTATTGTCTGCTTTTGGTGAAAA
ATGCTTTTCATTGTGGtcatgttgttttttatttgattcaAATTCATGTT
GACTATAGATCGATTCTTGAGGTTGTCGAGGCGGATCATACTCGGCTACC
GTAGTTGCGCGTTGTTCAACTATTCTTGGTTCGGGGTTGATATTTCCATC
GTGTGTTGGAGGCTTTATTGAATTTCGATGTTGCTTATGGTAAGGATTTG
GTGCAAATGTTTCTTCGTGTACTTGAGGTTTTATAGAGGCTTGGCGTTGT
CTGTGTTTAGGTTCATCTAGTGTTTCTTCGTGTGCTGAGGGCCTTATGCT
TCTCCTTTTATCCATTATAATTCGCTCTGGTTCAAAAGTTTCTTCTTGAG
CAGGAGGCCTTGCCGACTTTCGGTGTGGCGTTTGTACAGCTTCTTGTTCA
AAAGTTTCCTCGTGTGTCGGAGGTCTTATTGACTTCCGGTGTGGCTCTTG
TTTAGCGTTTGACACCAAGGTTTCTTCGTGTGCCGGAGGTCTTATTGATC
TTCGCTGTGGTGTCTGTCTGACCTCTGGCTCAAAGGTTTCGTCATGTGTA
GGAGGCCTTGTTGGTTTCCGGTTCGGCGTCTGTCTAGCAGCGTCCGGTTC
AAAGGCTTCTTCGTGTGCCGGAGGTCTTATTGATCTTCGCTGTGGTGTCT
GTCTGGCCTCGGGTTCAAAGGATTCGGCATGTATAGAAGGCCTTATTGAT
TTTCGGTTTGGCGTCAGTCTATCAGTGTCCGGTTCAAAGGTTTCTACGTG
TGTAGGAGGTCTTATTGATCTTCGGTGTGATGTCTGTCTGGCCTCTGGCT
CAAAGGATTCGTCATGTACCGGAGGCCTTATTGAGTTTCGGGTTGGCGTC
TGTCTAGCAGTGTCCGGTTCAAAGGTTTCTTCGTGTGTATGAGGTCTTAT
TGATCTTCGCTGTGGTGTCTGTCT
Run BLAST on NCBI

transcript from alignment at sc0000276:94021..96919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017794 ID=TCONS_00017794|Name=TCONS_00017794|organism=Clytia hemisphaerica|type=transcript|length=2899bp|location=Sequence derived from alignment at sc0000276:94021..96919- (Clytia hemisphaerica)
CATCGGTTTCCCTTGATACAAGAGTAGTTGGAACATGGGTTTCCTTTGAT
ACAAGAGTAGTAGGAACAGGGGCTTCCTTTGAGACGAGACTAGTGGGAAC
ATTGGTTTCCTTTGTGGTAGAAGAAAAAAGTTCTTGGTTTTCCTTTGAGA
CAGGAGAAGATATTTTTCGGATTTCCTTTGAAGTTGGAGTATTCAGAAAA
CCGGTGGTTTGTACTTTTTCTACAATATCGGGTTGGTTTTGGATTGTAAA
GTTATTATAAATTGTGATTGGTCTTCGACCATCGACAATTTCATAAGGCT
CATCATACACTTCGTCACTTTCTGACGATTCGCTTTTTCGTCTCCTTGAG
AAAGCTTTGAAAGGAAATTTTGATTTTTTACTGTCCTTATTGTTTTTATT
GTTTTGTTTGGGTTTTGTTGAGTTGTTTTTGTTGTCTTTCGATTTTCCAC
CTGTTCCAGTTACTTGTTCTTGGCCGTCACTCGGTTTGGTATTTAGAATA
AGTTGTTTTTGGTTTATGTTGTTTTTAACGTTTGTTTTTTCTTCAGTATT
ACTATCTTTGTGGATGTTTTTAGAAAAACCTGTGATCTGTTTATCTTGGT
TCACACTATCCCTTTTTTGGTATGGACTTTCCCTTTTTTGGTATATATGT
TCCCTTTTTTGGTATATATCTTCCCTTTTTTGGTATATATCTTCCCTTTT
TTGGTATATATCCTCTCTTGTTTGATAGAGGCTTTCCTTATTAGCTTTTG
TAGATAAATCACTTTTGTGTAGATTTTCAATGTACTGAACGATATCTAAT
TGGCGGGGTGGTAATTTGTAAGCTGCTTTAGGTTGATGTTTCTGACCAGA
TTGTACATTTTCCTCTGTGATTTCATTATAAATCACTTCAGGCGTTTGAC
CTGAATGCTTAACGGATTGTTTTTGATTTGATTTCTCTGAGTAGCCTCTC
GTAGACAAATTATTCATGCGGTGGGCTTCATTAGTCACATGTTTTGTATT
GTTTTGTGCCTGTCGATACAAATTCTCCTGAATGACTTCTGATCTTTGAT
GTTTATCTGGGTGTGTATTTCTTTGGGTATGTGTAGTATTGATGTCGTAG
TTTTTGTCAGTATAATTGTCATTCGGCTCTCGGTAATCTTGCCGTGAGGT
TTCCGACGATTTAACTTGTTTTGAGTTTTCTGTGTACACCCTTGTATTGT
TCATTGGGTAATTTTCATTGTACTGTTGTCTAGTGTCGATTGGCTCTTCT
GGATAATGGTGATGATTCATTTGGTGTCTATTGTCTGCTTTTGGTGAAAA
ATGCTTTTCATTGTGGTCATGTTGTTTTTTATTTGATTCAAATTCATGTT
GACTATAGATCGATTCTTGAGGTTGTCGAGGCGGATCATACTCGGCTACC
GTAGTTGCGCGTTGTTCAACTATTCTTGGTTCGGGGTTGATATTTCCATC
GTGTGTTGGAGGCTTTATTGAATTTCGATGTTGCTTATGGTAAGGATTTG
GTGCAAATGTTTCTTCGTGTACTTGAGGTTTTATAGAGGCTTGGCGTTGT
CTGTGTTTAGGTTCATCTAGTGTTTCTTCGTGTGCTGAGGGCCTTATGCT
TCTCCTTTTATCCATTATAATTCGCTCTGGTTCAAAAGTTTCTTCTTGAG
CAGGAGGCCTTGCCGACTTTCGGTGTGGCGTTTGTACAGCTTCTTGTTCA
AAAGTTTCCTCGTGTGTCGGAGGTCTTATTGACTTCCGGTGTGGCTCTTG
TTTAGCGTTTGACACCAAGGTTTCTTCGTGTGCCGGAGGTCTTATTGATC
TTCGCTGTGGTGTCTGTCTGACCTCTGGCTCAAAGGTTTCGTCATGTGTA
GGAGGCCTTGTTGGTTTCCGGTTCGGCGTCTGTCTAGCAGCGTCCGGTTC
AAAGGCTTCTTCGTGTGCCGGAGGTCTTATTAATCTTCGCTGTGGTGTTT
GTCTGCCCTCGGGCTCAAAGGTTTCGTCATGTGTAGGAGGTCTTATTGAT
CTTCGGTGTGATGTCTGCCTGACCTCGGGTTCAAAGGATTCGGCATGTAT
AGAAGGCCTTATTGATTTTCGGTTTGGCGTCAGTCTATCAGTGTCCAGTT
CAAAGGTTTCTTCGTGTGTAGGAGGTCTTATTGATCTTCGGTGTGATGTC
TGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCGGAGGCCTTATTGA
GTTTCGGGTTGGCGTCTGTCTAGCAGTGTCCAGTTCAAAGGTTTCTTCGT
GTGTAGGAGGTCTTATTGATCTTCGCTGTGGTGTCTGTCTGGCCTCGGGT
TCAAAGGATTCGGCATGTATAGAAGGCCTTATTGATTTTCGGTTTGGCGT
CAGTCTATCAGTGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGTCTTA
TTGATCTTCGGTGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCA
TGTACCGGAGGCCTTATTGAGTTTCGGGTTGGCGTCTGTCTAGCAGTGTC
CGGTTCAAAGGTTTCTTCGTGTGTATGAGGTCTTATTGATCTTCGGTTTG
GCGTCAGTCTATCAGTGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGT
CTTATTGATCTTCGATGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTC
GTCATGTACCGGAGGCCTTATTGAGTTTCGGGTTGGCGTCTGTCTATCAG
TGTCCGGTTCAAAGGTTTCTTCGTGTGTAGGAGGTCTTATTGATCTTCGA
TGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCGGAGG
CCTTATTGAGTTTCGGGTTGGCGTCTGTCTATCAGTGTCCGGTTCAAAGG
TTTCTTCGTGTGCCAAAGGTCTTATTGATCTTCGCTGTGGTGTCTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009974XLOC_009974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017794-exon-sc0000276-1575043694:94997..96919TCONS_00017794-exon-sc0000276-1575043694:94997..96919Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1575043694:94391..94660TCONS_00017794-exon-sc0000276-1575043694:94391..94660Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1575043694:94021..94051TCONS_00017794-exon-sc0000276-1575043694:94021..94051Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1510915933:94997..96919TCONS_00017794-exon-sc0000276-1510915933:94997..96919Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1510915933:94391..94660TCONS_00017794-exon-sc0000276-1510915933:94391..94660Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1510915933:94021..94051TCONS_00017794-exon-sc0000276-1510915933:94021..94051Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1491911889:94997..96919TCONS_00017794-exon-sc0000276-1491911889:94997..96919Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1491911889:94391..94660TCONS_00017794-exon-sc0000276-1491911889:94391..94660Clytia hemisphaericaexon
TCONS_00017794-exon-sc0000276-1491911889:94021..94051TCONS_00017794-exon-sc0000276-1491911889:94021..94051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:94021..96919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.014539	0.0470008	0	0	0.415407	0.100843	0.109227	0.15762	0	0.0884466	0.385848	0.182985	0	0.0930477	0	0	0	0.00940549	0	0	0.087272	0.201555	0.0746793	0	0	0.119094	0	0.0515309	0.0548075	0.0786906
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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