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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017793 ID=TCONS_00017793|Name=TCONS_00017793|organism=Clytia hemisphaerica|type=transcript|length=3549bp
CTTCTCGAAAAACATCAATTGAACTTGCGGGACTCCATTCTGCTAGTGGA
CTTGGATACTGCACTGTCTTATTGTTCTGCTTTTTGATTCTCAAGAAATT
TGATGGATCGGTGTTCACCTCCTCATAATGGTTTATCCCCAAGTCAGAAA
AAGTACAATGGATTTCTTTTGTAGTAGGGATATGATGATCATCGGTTTCC
CTTGATACAAGAGTAGTTGGAACATGGGTTTCCTTTGATACAAGAGTAGT
AGGAACAGGGGCTTCCTTTGAGACGAGACTAGTGGGAACATTGGTTTCCT
TTGTGGTAGAAGAAAAAAGTTCTTGGTTTTCCTTTGAGACAGGAGAAGAT
ATTTTTCGGATTTCCTTTGAAGTTGGAGTATTCAGAAAACCGGTGGTTTG
TACTTTTTCTACAATATCGGGTTGGTTTTGGATTGTAAAGTTATTATAAA
TTGTGATTGGTCTTCGACCATCGACAATTTCATAAGGCTCATCATACACT
TCGTCACTTTCTGACGATTCGCTTTTTCGTCTCCTTGAGAAAGCTTTGaa
aggaaattttgattttttactgtccttattgtttttattgttttgtttgg
GTTTTGTTGAGTTGTTTTTGTTGTCTTTCGATTTTCCACCTGTTCCAGTT
ACTTGTTCTTGGCCGTCACTCGGTTTGGTATTTAGAATAAGTTGTTTTTG
GTTTATGTTGTTTTTAacgtttgttttttcttcagtATTACTATCTTTGT
GGATGTTTTTAGAAAAACCTGTGATCTGTTTATCTTGGTTCACACTATCC
CTTTTTTGGTATGGACTTTCCCTTTTTTGGTATATATGTTCCCTTTTTTG
GTATATATCTTCCCTTTTTTGGTATATATCTTCCCTTTTTTGGTATATAT
CCTCTCTTGTTTGATAGAGGCTTTCCTTATTAGCTTTTGTAGATAAATCA
CTTTTGTGTAGATTTTCAATGTACTGAACGATATCTAATTGGCGGGGTGG
TAATTTGTAAGCTGCTTTAGGTTGATGTTTCTGACCAGATTGTACATTTT
CCTCTGTGATTTCATTATAAATCACTTCAGGCGTTTGACCTGAATGCTTA
ACGgattgtttttgatttgatttctcTGAGTAGCCTCTCGTAGACAAATT
ATTCATGCGGTGGGCTTCATTAGTCACATGTTTTGTATTGTTTTGTGCCT
GTCGATACAAATTCTCCTGAATGACTTCTGATCTTTGATGTTTATCTGGG
TGTGTATTTCTTTGGGTATGTGTAGTATTGATGTCGTAGTTTTTGTCAGT
ATAATTGTCATTCGGCTCTCGGTAATCTTGCCGTGAGGTTTCCGACGATT
TAACTTGTTTTGAGTTTTCTGTGTACACCCTTGTATTGTTCATTGGGTAA
TTTTCATTGTACTGTTGTCTAGTGTCGATTGGCTCTTCTGGATAATGGTG
ATGATTCATTTGGTGTCTATTGTCTGCTTTTGGTGAAAAATGCTTTTCAT
TGTGGtcatgttgttttttatttgattcaAATTCATGTTGACTATAGATC
GATTCTTGAGGTTGTCGAGGCGGATCATACTCGGCTACCGTAGTTGCGCG
TTGTTCAACTATTCTTGGTTCGGGGTTGATATTTCCATCGTGTGTTGGAG
GCTTTATTGAATTTCGATGTTGCTTATGGTAAGGATTTGGTGCAAATGTT
TCTTCGTGTACTTGAGGTTTTATAGAGGCTTGGCGTTGTCTGTGTTTAGG
TTCATCTAGTGTTTCTTCGTGTGCTGAGGGCCTTATGCTTCTCCTTTTAT
CCATTATAATTCGCTCTGGTTCAAAAGTTTCTTCTTGAGCAGGAGGCCTT
GCCGACTTTCGGTGTGGCGTTTGTACAGCTTCTTGTTCAAAAGTTTCCTC
GTGTGTCGGAGGTCTTATTGACTTCCGGTGTGGCTCTTGTTTAGCGTTTG
ACACCAAGGTTTCTTCGTGTGCCGGAGGTCTTATTGATCTTCGCTGTGGT
GTCTGTCTGACCTCTGGCTCAAAGGTTTCGTCATGTGTAGGAGGCCTTGT
TGGTTTCCGGTTCGGCGTCTGTCTAGCAGCGTCCGGTTCAAAGGCTTCTT
CGTGTGCCGGAGGTCTTATTAATCTTCGCTGTGGTGTTTGTCTGCCCTCG
GGCTCAAAGGTTTCGTCATGTGTAGGAGGTCTTATTGATCTTCGGTGTGA
TGTCTGCCTGACCTCGGGTTCAAAGGATTCGGCATGTATAGAAGGCCTTA
TTGATTTTCGGTTTGGCGTCAGTCTATCAGTGTCCAGTTCAAAGGTTTCT
TCGTGTGTAGGAGGTCTTATTGATCTTCGGTGTGATGTCTGTCTGGCCTC
TGGCTCAAAGGATTCGTCATGTACCGGAGGCCTTATTGAGTTTCGGGTTG
GCGTCTGTCTAGCAGTGTCCAGTTCAAAGGTTTCTTCGTGTGTAGGAGGT
CTTATTGATCTTCGCTGTGGTGTCTGTCTGGCCTCGGGTTCAAAGGATTC
GGCATGTATAGAAGGCCTTATTGATTTTCGGTTTGGCGTCAGTCTATCAG
TGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGTCTTATTGATCTTCGG
TGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCGGAGG
CCTTATTGAGTTTCGGGTTGGCGTCTGTCTAGCAGTGTCCGGTTCAAAGG
TTTCTTCGTGTGTATGAGGTCTTATTGATCTTCGGTTTGGCGTCAGTCTA
TCAGTGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGTCTTATTGATCT
TCGATGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCG
GAGGCCTTATTGAGTTTCGGGTTGGCGTCTGTCTATCAGTGTCCGGTTCA
AAGGTTTCTTCGTGTGCCAAAGGTCTTATTGATCTTCGCTGTGGTGTCTG
TCTGGCCTCTGGCTCAAAGGTTTCGTCATGTGTAGGAGGCCTTATTGATT
TTCGGGTTGGCGTCAGTCTAGCAGTGTCCTGTTCAAAGGTTTCTTCGTGT
GCCAAAGGTCTTATTGATCTTCGCTGTGGTGTCTGTCTGGCCTCTGGCTC
AAAGGTTTCGTCATGTGTAGGAGGCCTTATTGATTTTCGGGTTGGCGTCT
GTCTAGCAGCGTCCTGTTCAAAGGTTTCTTCGTGTGCCAAAGGTCTTATT
GATCTTCGCTGTGGTGTCTGTCTGGCCTCGGGTTCAAAGATTTCTTCGTT
TAACGCAGGCCTTATTGATTTTCTGGTGGAGCTTTTTATAGGCTCATCTT
GTCTGTTTGTGTTAATTGATTTACGCTTTGAGTTGAGATCAGGTTCTAGA
GCCatcatttcttttgatttaCTTGATATATGTGATTCAGGTGTGAAAAG
TTGATCACGTGCCGGTGGTTTAATACTTGTACGTTGTGCGATTGGTTTAG
GATCAACTGAGAAGATTTCTTTACGAGCTGCTGACTGGTTTCGCTTAGGT
TTGATCGTTGATTTACGTTGAAATGCAGCTTCTTGAAAGGTTGTTGTCt Run BLAST on NCBI transcript from alignment at sc0000276:93365..97108- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017793 ID=TCONS_00017793|Name=TCONS_00017793|organism=Clytia hemisphaerica|type=transcript|length=3744bp|location=Sequence derived from alignment at sc0000276:93365..97108- (Clytia hemisphaerica)
CTTCTCGAAAAACATCAATTGAACTTGCGGGACTCCATTCTGCTAGTGGA
CTTGGATACTGCACTGTCTTATTGTTCTGCTTTTTGATTCTCAAGAAATT
TGATGGATCGGTGTTCACCTCCTCATAATGGTTTATCCCCAAGTCAGAAA
AAGTACAATGGATTTCTTTTGTAGTAGGGATATGATGATCATCGGTTTCC
CTTGATACAAGAGTAGTTGGAACATGGGTTTCCTTTGATACAAGAGTAGT
AGGAACAGGGGCTTCCTTTGAGACGAGACTAGTGGGAACATTGGTTTCCT
TTGTGGTAGAAGAAAAAAGTTCTTGGTTTTCCTTTGAGACAGGAGAAGAT
ATTTTTCGGATTTCCTTTGAAGTTGGAGTATTCAGAAAACCGGTGGTTTG
TACTTTTTCTACAATATCGGGTTGGTTTTGGATTGTAAAGTTATTATAAA
TTGTGATTGGTCTTCGACCATCGACAATTTCATAAGGCTCATCATACACT
TCGTCACTTTCTGACGATTCGCTTTTTCGTCTCCTTGAGAAAGCTTTGAA
AGGAAATTTTGATTTTTTACTGTCCTTATTGTTTTTATTGTTTTGTTTGG
GTTTTGTTGAGTTGTTTTTGTTGTCTTTCGATTTTCCACCTGTTCCAGTT
ACTTGTTCTTGGCCGTCACTCGGTTTGGTATTTAGAATAAGTTGTTTTTG
GTTTATGTTGTTTTTAACGTTTGTTTTTTCTTCAGTATTACTATCTTTGT
GGATGTTTTTAGAAAAACCTGTGATCTGTTTATCTTGGTTCACACTATCC
CTTTTTTGGTATGGACTTTCCCTTTTTTGGTATATATGTTCCCTTTTTTG
GTATATATCTTCCCTTTTTTGGTATATATCTTCCCTTTTTTGGTATATAT
CCTCTCTTGTTTGATAGAGGCTTTCCTTATTAGCTTTTGTAGATAAATCA
CTTTTGTGTAGATTTTCAATGTACTGAACGATATCTAATTGGCGGGGTGG
TAATTTGTAAGCTGCTTTAGGTTGATGTTTCTGACCAGATTGTACATTTT
CCTCTGTGATTTCATTATAAATCACTTCAGGCGTTTGACCTGAATGCTTA
ACGGATTGTTTTTGATTTGATTTCTCTGAGTAGCCTCTCGTAGACAAATT
ATTCATGCGGTGGGCTTCATTAGTCACATGTTTTGTATTGTTTTGTGCCT
GTCGATACAAATTCTCCTGAATGACTTCTGATCTTTGATGTTTATCTGGG
TGTGTATTTCTTTGGGTATGTGTAGTATTGATGTCGTAGTTTTTGTCAGT
ATAATTGTCATTCGGCTCTCGGTAATCTTGCCGTGAGGTTTCCGACGATT
TAACTTGTTTTGAGTTTTCTGTGTACACCCTTGTATTGTTCATTGGGTAA
TTTTCATTGTACTGTTGTCTAGTGTCGATTGGCTCTTCTGGATAATGGTG
ATGATTCATTTGGTGTCTATTGTCTGCTTTTGGTGAAAAATGCTTTTCAT
TGTGGTCATGTTGTTTTTTATTTGATTCAAATTCATGTTGACTATAGATC
GATTCTTGAGGTTGTCGAGGCGGATCATACTCGGCTACCGTAGTTGCGCG
TTGTTCAACTATTCTTGGTTCGGGGTTGATATTTCCATCGTGTGTTGGAG
GCTTTATTGAATTTCGATGTTGCTTATGGTAAGGATTTGGTGCAAATGTT
TCTTCGTGTACTTGAGGTTTTATAGAGGCTTGGCGTTGTCTGTGTTTAGG
TTCATCTAGTGTTTCTTCGTGTGCTGAGGGCCTTATGCTTCTCCTTTTAT
CCATTATAATTCGCTCTGGTTCAAAAGTTTCTTCTTGAGCAGGAGGCCTT
GCCGACTTTCGGTGTGGCGTTTGTACAGCTTCTTGTTCAAAAGTTTCCTC
GTGTGTCGGAGGTCTTATTGACTTCCGGTGTGGCTCTTGTTTAGCGTTTG
ACACCAAGGTTTCTTCGTGTGCCGGAGGTCTTATTGATCTTCGCTGTGGT
GTCTGTCTGACCTCTGGCTCAAAGGTTTCGTCATGTGTAGGAGGCCTTGT
TGGTTTCCGGTTCGGCGTCTGTCTAGCAGCGTCCGGTTCAAAGGCTTCTT
CGTGTGCCGGAGGTCTTATTAATCTTCGCTGTGGTGTTTGTCTGCCCTCG
GGCTCAAAGGTTTCGTCATGTGTAGGAGGTCTTATTGATCTTCGGTGTGA
TGTCTGCCTGACCTCGGGTTCAAAGGATTCGGCATGTATAGAAGGCCTTA
TTGATTTTCGGTTTGGCGTCAGTCTATCAGTGTCCAGTTCAAAGGTTTCT
TCGTGTGTAGGAGGTCTTATTGATCTTCGGTGTGATGTCTGTCTGGCCTC
TGGCTCAAAGGATTCGTCATGTACCGGAGGCCTTATTGAGTTTCGGGTTG
GCGTCTGTCTAGCAGTGTCCAGTTCAAAGGTTTCTTCGTGTGTAGGAGGT
CTTATTGATCTTCGCTGTGGTGTCTGTCTGGCCTCGGGTTCAAAGGATTC
GGCATGTATAGAAGGCCTTATTGATTTTCGGTTTGGCGTCAGTCTATCAG
TGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGTCTTATTGATCTTCGG
TGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCGGAGG
CCTTATTGAGTTTCGGGTTGGCGTCTGTCTAGCAGTGTCCGGTTCAAAGG
TTTCTTCGTGTGTATGAGGTCTTATTGATCTTCGGTTTGGCGTCAGTCTA
TCAGTGTCCGGTTCAAAGGTTTCTACGTGTGTAGGAGGTCTTATTGATCT
TCGATGTGATGTCTGTCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCG
GAGGCCTTATTGAGTTTCGGGTTGGCGTCTGTCTATCAGTGTCCGGTTCA
AAGGTTTCTTCGTGTGTAGGAGGTCTTATTGATCTTCGATGTGATGTCTG
TCTGGCCTCTGGCTCAAAGGATTCGTCATGTACCGGAGGCCTTATTGAGT
TTCGGGTTGGCGTCTGTCTATCAGTGTCCGGTTCAAAGGTTTCTTCGTGT
GCCAAAGGTCTTATTGATCTTCGCTGTGGTGTCTGTCTGGCCTCTGGCTC
AAAGGTTTCGTCATGTGTAGGAGGCCTTATTGATTTTCGGGTTGGCGTCA
GTCTAGCAGTGTCCTGTTCAAAGGTTTCTTCGTGTGCCAAAGGTCTTATT
GATCTTCGCTGTGGTGTCTGTCTGGCCTCTGGCTCAAAGGTTTCGTCATG
TGTAGGAGGCCTTATTGATTTTCGGGTTGGCGTCTGTCTAGCAGCGTCCT
GTTCAAAGGTTTCTTCGTGTGCCAAAGGTCTTATTGATCTTCGCTGTGGT
GTCTGTCTGGCCTCGGGTTCAAAGATTTCTTCGTTTAACGCAGGCATTAT
TGATTTTCGGGTTTGTCTAGCGTCTAGTTCAAAGGTTTCATCGTGTACTA
CAGGCCTTATTGATTTTCTGGTGGAGCTTTTTATAGGCTCATCTTGTCTG
TTTGTGTTAATTGATTTACGCTTTGAGTTGAGATCAGGTTCTAGAGCCAT
CATTTCTTTTGATTTACTTGATATATGTGATTCAGGTGTGAAAAGTTGAT
CACGTGCCGGTGGTTTAATACTTGTACGTTGTGCGATTGGTTTAGGATCA
ACTGAGAAGATTTCTTTACGAGCTGCTGACTGGTTTCGCTTAGGTTTGAT
CGTTGATTTACGTTGAAATGCAGCTTCTTGAAAGGTTGTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017793-exon-sc0000276-1575043694:94299..97108 | TCONS_00017793-exon-sc0000276-1575043694:94299..97108 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1575043694:93716..94163 | TCONS_00017793-exon-sc0000276-1575043694:93716..94163 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1575043694:93365..93655 | TCONS_00017793-exon-sc0000276-1575043694:93365..93655 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1510915933:94299..97108 | TCONS_00017793-exon-sc0000276-1510915933:94299..97108 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1510915933:93716..94163 | TCONS_00017793-exon-sc0000276-1510915933:93716..94163 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1510915933:93365..93655 | TCONS_00017793-exon-sc0000276-1510915933:93365..93655 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1491911889:94299..97108 | TCONS_00017793-exon-sc0000276-1491911889:94299..97108 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1491911889:93716..94163 | TCONS_00017793-exon-sc0000276-1491911889:93716..94163 | Clytia hemisphaerica | exon |
| TCONS_00017793-exon-sc0000276-1491911889:93365..93655 | TCONS_00017793-exon-sc0000276-1491911889:93365..93655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:93365..97108 - |
Blast
BLAST of TCONS_00017793 vs. Swiss-Prot (Human)
Match: MUC1 (Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=3) HSP 1 Score: 134.035 bits (336), Expect = 1.726e-31 Identity = 171/518 (33.01%), Postives = 195/518 (37.64%), Query Frame = -3
Query: 1637 EETFEQDAARQTPTRKSIR---PPTHDETFEPEARQTPQRRSIRPLAHEETFEQDTARLTPTRKSIRPPTHDETFEPEARQTPQRRSIRPLAHEETFEPDTDRQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHVETFEPDTDRLTPNRRSIRPHTHEETFEPDTARQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHVETFEPDTDRLTPNRKSIRPSIHAESFEPEARQTPQRRSIRPPTHEETFELDTARQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHEETFELDTDRLTPNRKSIRPSIHAESFEPEVRQTSHRRSIRPPTHDETFEPEGRQTPQRRLIRPPAHEEAFEPDAARQTPNRKPTRPPTHDETFEPEVRQTPQRRSIRPPAHEETLVSNAKQEPHRKSIRPPTHEETFEQEAVQTPHRKSARPPAQEETFEPERIIMDKRRSIRPSAHEETLDEPKHRQRQASIKPQVHEETFAPNPYHKQHRNSIKPPTHD 3181
T+ QD TR ++ PP HD T P+ + P S P AH T DT P S PP H T P+ R P S P AH T PDT P S PP H + P+ R S PP H T PDT R P S P H T PDT R P S PP H + P+ R S PP H T PDT P S P H + P+ R P S PP H T DT R P S PP H + P+ R S PP H T DT P S P H + P+ R S PP H T P+ R P PPAH PD R P T PP H T P+ R P S PPAH T + + P S PP H T + P S PPA T P+ S P AH T P R S P H T AP+ + S PP H
Sbjct: 91 AATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPG--STAPPAHGVTSAPDT---RPAPGSTAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDT-RPAPG--STAPPAHGVTSAPDT-RPAP--GSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDT-RPAP--GSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTRPAPGS--TAPPAHGVTSAPD-TRPAPGS--TAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDTRPAP--GSTAPPAHGVTSAPD--TRPAPGSTAPPAHGVTSAPD--TRPAPGSTAPPAHGVT-SAPDTRPAPGSTAPPAHGVTSAPD--TRPAPGSTAPPAHG 557
The following BLAST results are available for this feature:
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