|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017792 ID=TCONS_00017792|Name=TCONS_00017792|organism=Clytia hemisphaerica|type=transcript|length=2240bp
CTTTGAATTCTTCGACGACATTTAGTAGTATTTTGAAGCCTCCACCGGTC
ACCCATCCACAGGTGTTAATGATGCAACCACTGGTCGCCGCTTGGAGAAG
GAAAGAACAAAACGATTAAAACGATTGTTATTTTGGTGAGTTGTTGGGCA
CTAGGACGCATGAATTCTGACCGGAAATTGTGGGTTTAAGCCACAAATCT
ACATTCCATGATctaagccccccccccagaaatctgaagggcacctaggc
caggttagtagtAGCAGGCTATTgttttgcaattctttggggttacctat
tcattaagggtacctagctgtcttgatggaggctctgggggctggttata
ttttccaaatcgaatattttaaaatatttcaaattattgaatttttttac
cccagcaccattaagattttaggaatgaaaaaagaacaaaaggtgttaat
tcaaaaaaatcatcggctgaataggggtacctaactcaaagcaatttctc
aaggggacctaacTCGTTGGGGGCACCATGCTTCAATGGGCGCAACtaaa
aagtgggctgaaaccatgcaTTCAAGAGCCAGAAAGTCACTTCAGAATTT
AAGTTAATAAAAGTTGCAACACCTTATTCAGTCAGAATAAAAGTGATTTG
TCTCTCAAATCTCGATGGCTTGCCGAGAAATGGGGAATTTAAAGTTTTCT
AAATGGAATTGCAAGTGTGAATTTCAAAAATGGCTTTGGTCaacttttaa
agaaatttagCAGTTTATACGTCTATTGTTATCCGTGGTTACGAATTTTA
TATTACTAAAGTGAttaaattttgtaaatgaaATTCTAGCGTAAACAAAT
TCCTGAAGCGAATGCCTATCTTGAAACACATAAAAATACGCGTATTAATA
ATGtacaaattttaaaatgatAATGTTTCAACAATGTCTAAGGGAGTCAA
CATTTTGCAAAAGGTTCATCATTTCGCCAAAACTGACGATCGTTTTTCTT
TCGTCCAATTCATTATCACGGATAAGGTGGAAATCTTTCGTGTGGCTGAA
CGCAGTTCTTTATTATTCTTTCCGTAAAATATAATGTTCAAAATGCTTGC
TAAAAGACATGGTACCATCACCCAATTATTATATCTAGTTTTTTCGTACT
GGCCCCTTATACCTCTGTCAAAGTAGCCAGTCATAATGAGTAGCCAAAAG
ATACCGAAAGGTAACCACGTCACTAAAAACACACTGATCAAAATGCCTAT
ATATCTGATAACCTTCATCCTATGTTTCTCCTTTGTGCGACTCTTGAAAT
CCTCGTGTTTCTTTGTCCGCCGACGACACATCAGAAATATGACAAGCATA
TAGGTAAAACACATGGTAGTCACAGGAAGAATGAGGCCGACCATTAGGAG
AAAAGCTTTGTAAAAGAAATTGAATGATTGGCCGAAAACATCGTTACGGA
CACAGAAACCATGCTTGTAATCCAGTTTGAATGTCAAGAAATTTGGTGTC
ACTAAAATAAAGCCTGTCAACCACAAGGTGATGACGTATCCCGAAATATA
TcgcttttttgtgtttttgacaATAAACGGCTTTTTAATGATTCTATACC
AATTGACCGACATAAAACAAATGATATAAACCGTCACAAAAGCTGCCGTG
AAAAACACCGACAGCCCATCAATAAACCCGCACTGTATTGCTTCGAGATA
CCAGTACCCTGACTGTATATGACGACGGTTCTTAACAGCTATGAAAGGAA
TAAACCCTATTTGTTGCACCATGTTACTAACAGCTAACTGAAACAAACAA
AAGTTGAAATTGGTATGCCGTATTCTTCTCGTCAGATATATGTAAATAAA
CATCAGGTTCAAAgcacatgcgcagaaaatgatTGTTATTGTCAACGAAT
AGTAGATAAGTGTGACATTAcgattgaaaatttcttccactGTGCCCAGT
GTTTCGTTGGTCGTGTTTcccatttttggaaaaatggtCAATGTTACTGC
GGGAAGTTGAGAAGTTTTTGTGTGAAGATTTGATCTATATCATTTTTTCT
GAAATGTGAAAGATAATAAGCGATACAAAGCTAAACTTATTCTCTCAACC
CGGAATCTAATCGACTAATTTTATCTTTTCCGACAATTTTCATATATATG
CTAAATTGACTGTGTATACATATAAAAGATTCCAAATGTTTTACTTTAAT
AAGGGCAAGATGAAATCTCCTATGAAAGACAAAATAAATC Run BLAST on NCBI transcript from alignment at sc0000276:81823..84125- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017792 ID=TCONS_00017792|Name=TCONS_00017792|organism=Clytia hemisphaerica|type=transcript|length=2303bp|location=Sequence derived from alignment at sc0000276:81823..84125- (Clytia hemisphaerica)
CTTTGAATTCTTCGACGACATTTAGTAGTATTTTGAAGCCTCCACCGGTC
ACCCATCCACAGGTGTTAATGATGCAACCACTGGTCGCCGCTTGGAGAAG
GAAAGAACAAAACGATTAAAACGATTGTTATTTTGGTGAGTTGTTGGGCA
CTAGGACGCATGAATTCTGACCGGAAATTGTGGGTTTAAGCCACAAATCT
ACATTCCATGATCTAAGCCCCCCCCCCAGAAATCTGAAGGGCACCTAGGC
CAGGTTAGTAGTAGCAGGCTATTGTTTTGCAATTCTTTGGGGTTACCTAT
TCATTAAGGGTACCTAGCTGTCTTGATGGAGGCTCTGGGGGCTGGTTATA
TTTTCCAAATCGAATATTTTAAAATATTTCAAATTATTGAATTTTTTTAC
CCCAGCACCATTAAGATTTTAGGAATGAAAAAAGAACAAAAGGTGTTAAT
TCAAAAAAATCATCGGCTGAATAGGGGTACCTAACTCAAAGCAATTTCTC
AAGGGGACCTAACTCGTTGGGGGCACCATGCTTCAATGGGCGCAACTAAA
AAGTGGGCTGAAACCATGCATTCAAGAGCCAGAAAGTCACTTCAGAATTT
AAGTTAATAAAAGTTGCAACACCTTATTCAGTCAGAATAAAAGTGATTTG
TCTCTCAAATCTCGATGGCTTGCCGAGAAATGGGGAATTTAAAGTTTTCT
AAATGGAATTGCAAGTGTGAATTTCAAAAATGGCTTTGGTCAACTTTTAA
AGAAATTTAGCAGTTTATACGTCTATTGTTATCCGTGGTTACGAATTTTA
TATTACTAAAGTGATTAAATTTTGTAAATGAAATTCTAGCGTAAACAAAT
TCCTGAAGCGAATGCCTATCTTGAAACACATAAAAATACGCGTATTAATA
ATGTACAAATTTTAAAATGATAATGTTTCAACAATGTCTAAGGGAGTCAA
CATTTTGCAAAAGGTTCATCATTTCGCCAAAACTGACGATCGTTTTTCTT
TCGTCCAATTCATTATCACGGATAAGGTGGAAATCTTTCGTGTGGCTGAA
CGCAGTTCTTTATTATTCTTTCCGTAAAATATAATGTTCAAAATGCTTGC
TAAAAGACATGGTACCATCACCCAATTATTATATCTAGTTTTTTCGTACT
GGCCCCTTATACCTCTGTCAAAGTAGCCAGTCATAATGAGTAGCCAAAAG
ATACCGAAAGGTAACCACGTCACTAAAAACACACTGATCAAAATGCCTAT
ATATCTGATAACCTTCATCCTATGTTTCTCCTTTGTGCGACTCTTGAAAT
CCTCGTGTTTCTTTGTCCGCCGACGACACATCAGAAATATGACAAGCATA
TAGGTAAAACACATGGTAGTCACAGGAAGAATGAGGCCGACCATTAGGAG
AAAAGCTTTGTAAAAGAAATTGAATGATTGGCCGAAAACATCGTTACGGA
CACAGAAACCATGCTTGTAATCCAGTTTGAATGTCAAGAAATTTGGTGTC
ACTAAAATAAAGCCTGTCAACCACAAGGTGATGACGTATCCCGAAATATA
TCGCTTTTTTGTGTTTTTGACAATAAACGGCTTTTTAATGATTCTATACC
AATTGACCGACATAAAACAAATGATATAAACCGTCACAAAAGCTGCCGTG
AAAAACACCGACAGCCCATCAATAAACCCGCACTGTATTGCTTCGAGATA
CCAGTACCCTGACTGTATATGACGACGGTTCTTAACAGCTATGAAAGGAA
TAAACCCTATTTGTTGCACCATGTTACTAACAGCTAACTGAAACAAACAA
AAGTTGAAATTGGTATGCCGTATTCTTCTCGTCAGATATATGTAAATAAA
CATCAGGTTCAAAGCACATGCGCAGAAAATGATTGTTATTGTCAACGAAT
AGTAGATAAGTGTGACATCACGATTGAAAATTTCTTCCACTGTGCCCAGT
GTTTCGTTGGTNTAGTAGATAAGTGTGACATTACGATTGAAAATTTCTTC
CACTGTGCCCAGTGTTTCGTTGGTCGTGTTTCCCATTTTTGGAAAAATGG
TCAATGTTACTGCGGGAAGTTGAGAAGTTTTTGTGTGAAGATTTGATCTA
TATCATTTTTTCTGAAATGTGAAAGATAATAAGCGATACAAAGCTAAACT
TATTCTCTCAACCCGGAATCTAATCGACTAATTTTATCTTTTCCGACAAT
TTTCATATATATGCTAAATTGACTGTGTATACATATAAAAGATTCCAAAT
GTTTTACTTTAATAAGGGCAAGATGAAATCTCCTATGAAAGACAAAATAA
ATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017792-exon-sc0000276-1575043694:82210..84125 | TCONS_00017792-exon-sc0000276-1575043694:82210..84125 | Clytia hemisphaerica | exon |
| TCONS_00017792-exon-sc0000276-1575043694:81823..82146 | TCONS_00017792-exon-sc0000276-1575043694:81823..82146 | Clytia hemisphaerica | exon |
| TCONS_00017792-exon-sc0000276-1510915933:82210..84125 | TCONS_00017792-exon-sc0000276-1510915933:82210..84125 | Clytia hemisphaerica | exon |
| TCONS_00017792-exon-sc0000276-1510915933:81823..82146 | TCONS_00017792-exon-sc0000276-1510915933:81823..82146 | Clytia hemisphaerica | exon |
| TCONS_00017792-exon-sc0000276-1491911889:82210..84125 | TCONS_00017792-exon-sc0000276-1491911889:82210..84125 | Clytia hemisphaerica | exon |
| TCONS_00017792-exon-sc0000276-1491911889:81823..82146 | TCONS_00017792-exon-sc0000276-1491911889:81823..82146 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:81823..84125 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
