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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017788 ID=TCONS_00017788|Name=TCONS_00017788|organism=Clytia hemisphaerica|type=transcript|length=1279bpRun BLAST on NCBI protein sequence of TCONS_00017788-protein >TCONS_00017788-protein ID=TCONS_00017788-protein|Name=TCONS_00017788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp PEDQEIINRESKQGRKLKDKLLLQHVPDDAVEKEKDAGLQRALDHKNRLLRun BLAST on NCBI transcript from alignment at sc0000276:18693..32199- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017788 ID=TCONS_00017788|Name=TCONS_00017788|organism=Clytia hemisphaerica|type=transcript|length=13507bp|location=Sequence derived from alignment at sc0000276:18693..32199- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000276:18693..32199- >TCONS_00017788 ID=TCONS_00017788|Name=TCONS_00017788|organism=Clytia hemisphaerica|type=CDS|length=10620bp|location=Sequence derived from alignment at sc0000276:18693..32199- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017788 vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4) HSP 1 Score: 273.863 bits (699), Expect = 6.843e-85 Identity = 153/370 (41.35%), Postives = 230/370 (62.16%), Query Frame = 3
Query: 6 EDQEIINRESKQGRKLKDKLLLQHVPDDAV-----------EKEKDAGLQRALDHKNRLLQYDRNFTKRTKVIDDESDYFASD-NRWLSNKQRNLLKKKEQDLRDKRFASRLDKKFTIDFAGRKIVESEENNHMYIE--DDISTPIDSLKRNEQLTDTESDDRHS------LIDPRIGVQPPTFHPAERDETSEEA-RPKNVWKGSSTNNHKKRLQDNQLQEISDQGMCMSMHQPWASLLVHGIKKLEGRSWYTPHRGRLWIASTAQRTDQEDIKHVVDDYKRMYS-DIPSHRYPKDYPSSALLGCVNVVDCASNEEYFQKHPMCTEENGSAYLFVCENPEQLKIKFQISGKHKIYKLEPHIHVAAKKNL 1049
E+Q+I+ R+S + +KL KL+ V E +GL++A+ HK++LL++DR +RT+VIDDESDYFASD N+WLS +R L+K+E++LR+ R ASRL KK TIDFAGRKI+E E + Y D+ I + N+ LT DR S L++P + PP + + ++A R ++ H+ R+QD + QE D G C+S+HQPWASLLV GIK++EGRSWYTPHRGRLWIA+TA++ +++ + Y+ + D+ +P DYPS LLGCV+++DC S +++ ++ P ++E+ S ++F+C+NP+++ +KF I G KI+KL+ IH AKK L
Sbjct: 211 EEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGTLNQPLTKL---DRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQLRIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGKDV---EFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFICKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGL 574 The following BLAST results are available for this feature:
BLAST of TCONS_00017788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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