TCONS_00017786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017786
Unique NameTCONS_00017786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017786 ID=TCONS_00017786|Name=TCONS_00017786|organism=Clytia hemisphaerica|type=transcript|length=888bp
CCTTTGAAACATCTTGACCACACTTTTTCTTATACAAACAAAGAAAGGTA
ATGGTAAACAAAAAGCACTACAACGATCTGGCATCAATAATGTTGGTCCT
CCACCAGAAATTAAAACAGTTTTACAAACTTTACGTGCTCGTTCTTTCGA
TAACATTGTGCAAAATGAACTCCCATAAGAGTGTCCAATCAAAACGTTCC
TACGTTTACTAAATCgatcaaaaataaacattacatCAGAGGCCAGCTCT
GTGAATTGATATGCATTATATACACGTGGTTTCCCACTTTGACCATGCCC
CAACAAATCTAATGCTATAATTTCATAACCAAGAGTAAGGAAATAATGTA
TCTGAGGTTCCCACATTTGTATAGTTCCACCAACTTCGTGAATAAAGAAT
AACATAACTTTAGATTCATAACTTTCATCCTCTGTTTTGGAGAATGTTGA
TTGTGTGTACAAGTCTTGCTCTCGTTGGGCATAATGGACCACGTGGATAG
TTCGATTTTCTCCTGTATTGATGAAGAGAGATGCTTTACAACGATTGGTG
GTTGTGAATAAATGATCAACTGCACGTTCATTTTGTAGACTGGATTTCTC
TTCACTAGCCTGTAATTCAGTAGGATGAACAGCACTGGCACTCACTGAAG
TGTTTTTAGAGTTGATTGATGTTGCAGAAGTATTTTCTGCTCTTGGCATT
TCAACATCACAAGACCCATTTAAAACAACAAATTCATCATTTATTTCTTT
GTATTTAACTTTgatagaaataaaataaaataaatcaatGATTAAAATTC
ACTGACGGAAGAACgaggagaaaaatttaataatgatATTAAAAAACATA
ATGGGGTGTTCGTAAAAAGTAGGGCACCCCAATTCGGG
Run BLAST on NCBI

transcript from alignment at sc0000276:10490..11773-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017786 ID=TCONS_00017786|Name=TCONS_00017786|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at sc0000276:10490..11773- (Clytia hemisphaerica)
CCTTTGAAACATCTTGACCACACTTTTTCTTATACAAACAAAGAAAGGTA
ATGGTAAACAAAAAGCACTACAACGATCTGGCATCAATAATGTTGGTCCT
CCACCAGAAATTAAAACAGTTTTACAAACTTTACGTGCTCGTTCTTTCGA
TAACATTGTGCAAAATGAACTCCCATAAGAGTGTCCAATCAAAACGTTCC
TACGTTTACTAAATCGATCAAAAATAAACATTACATCAGAGGCCAGCTCT
GTGAATTGATATGCATTATATACACGTGGTTTCCCACTTTGACCATGCCC
CAACAAATCTAATGCTATAATTTCATAACCAAGAGTAAGGAAATAATGTA
TCTGAGGTTCCCACATTTGTATAGTTCCACCAACTTCGTGAATAAAGAAT
AACATAACTTTAGATTCATAACTTTCATCCTCTGTTGATTGTGTATACAA
GTCTTGCTCTCGTTGGGCATAATGTACCACGTGGATAGTTCGATTTTCTC
CTGTATTGATGAAGAGAGATGCTTTGCAGCGATTGGTGGATGTGAATAAA
TGATCAACTGCACGTTCATTTTGTAGACTGGATTTCTCTTAACTAGCCTG
TAATCAAGTAGGATGAACAGCACTGGCACTCACTGAAGTGTTTTTGGAGT
TGATTGATGTTGCAGGAGTATTTTCTGCTCTTGGCATTTCCACATCACAT
GACCCATTTAAAACAACAAATTCATGATTTATTTCTTTGTGTATTTAACT
TTGATTGAAATAAANTATAGTTCCACCAACTCCGTGAATAAAGAATAACA
TAACTTTAGATTCATAACTTTCATCCTCTGTTTTGGAGAATGTTGATTGT
GTGTACAAGTCTTGCTCTCGTTGGGCATAATGGACCACGTGGATAGTTCG
ATTTTCTCCTGTATTGATGAAGAGAGATGCTTTACAACGATTGGTGGTTG
TGAATAAATGATCAACTGCACGTTCATTTTGTAGACTGGATTTCTCTTCA
CTAGCCTGTAATTCAGTAGGATGAACAGCACTGGCACTCACTGAAGTGTT
TTTAGAGTTGATTGATGTTGCAGAAGTATTTTCTGCTCTTGGCATTTCAA
CATCACAAGACCCATTTAAAACAACAAATTCATCATTTATTTCTTTGTAT
TTAACTTTGATAGAAATAAAATAAAATAAATCAATGATTAAAATTCACTG
ACGGAAGAACGAGGAGAAAAATTTAATAATGATATTAAAAAACATAATGG
GGTGTTCGTAAAAAGTAGGGCACCCCAATTCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009969XLOC_009969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017786-exon-sc0000276-1575043694:11371..11773TCONS_00017786-exon-sc0000276-1575043694:11371..11773Clytia hemisphaericaexon
TCONS_00017786-exon-sc0000276-1575043694:10490..10974TCONS_00017786-exon-sc0000276-1575043694:10490..10974Clytia hemisphaericaexon
TCONS_00017786-exon-sc0000276-1510915933:11371..11773TCONS_00017786-exon-sc0000276-1510915933:11371..11773Clytia hemisphaericaexon
TCONS_00017786-exon-sc0000276-1510915933:10490..10974TCONS_00017786-exon-sc0000276-1510915933:10490..10974Clytia hemisphaericaexon
TCONS_00017786-exon-sc0000276-1491911889:11371..11773TCONS_00017786-exon-sc0000276-1491911889:11371..11773Clytia hemisphaericaexon
TCONS_00017786-exon-sc0000276-1491911889:10490..10974TCONS_00017786-exon-sc0000276-1491911889:10490..10974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:10490..11773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62744	3.07565	2.02966	1.96997	7.62309	4.96259	5.49075	5.07017	3.01788	4.14203	4.50784	2.01804	0.372939	0.249915	0.417346	0.157429	0.878488	0.467532	1.53511	1.54393	1.94256	2.10286	4.0048	2.16295	1.26349	0.233688	3.21243	3.05041	1.47234	1.59982
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR000073AB_hydrolase_1
Blast
[Close]
BLAST of TCONS_00017786 vs. Swiss-Prot (Human)
Match: ABHD8 (Protein ABHD8 OS=Homo sapiens GN=ABHD8 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.098e-39
Identity = 68/145 (46.90%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:    1 TEDESYESKVMLFFIHEVGGTIQMWEPQIHYFLTLGYEIIALDLLGHGQSGKPRVYNAYQFTELASDVMFIFDRFSKRRNVLIGHSYGSSFCTMLSKERARKVCKTVLISGGGPTLLMPDRCSAFCLPLPFFVCIRKSVVKMFQR 435
            T  +  ++ V+LFFIH VGG++ +W+ Q+ +F+ LGYE++A DL GHG S  P+V  AY F  LA D+  IF R++K+RNVLIGHSYG SFCT L+ E    V K ++I+GGGPT L P  CS F +P     C+   +   F +
Sbjct:  167 TSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLK 311
The following BLAST results are available for this feature:
BLAST of TCONS_00017786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABHD83.098e-3946.90Protein ABHD8 OS=Homo sapiens GN=ABHD8 PE=2 SV=1[more]
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