TCONS_00017776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017776
Unique NameTCONS_00017776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017776 ID=TCONS_00017776|Name=TCONS_00017776|organism=Clytia hemisphaerica|type=transcript|length=229bp
AAAATCGCAGTTTTTTATGATGGTATTTTGGTTTGGTAGAGATATCTTGA
GTCTATTCTGATTCAATACATCTACAGATACAGAGGAGAAAATCGAACTA
TCCACGTGGTCCATTATGCCCAACGAGAGCAAGACTTGTACACACAATCA
ACATTCTCCAAAACAGAGGATGAAAGTTATGAATCTAAAGTTATGTTATT
CTTTATTCACGGAGTTGGTGGAACTATAN
Run BLAST on NCBI

transcript from alignment at sc0000276:4129..11009+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017776 ID=TCONS_00017776|Name=TCONS_00017776|organism=Clytia hemisphaerica|type=transcript|length=6881bp|location=Sequence derived from alignment at sc0000276:4129..11009+ (Clytia hemisphaerica)
AAAATCGCAGTTTTTTATGATGGTATTTTGGTTTGGTAGAGATATCTTGA
GTCTATTCTGATTCAATACATCTACAGATACAGAGGTaaataagtttttc
aaaaaagccactgaatttttctttcaagtagtgttttttttaatttttag
agtaaaattcttaaaaattcttttctttCTCAATCATGTATGTTTTCGGC
CGGGGTTTTGTCAAAGTCCTCAAATGGCCAAGTGGCCTGAAAAACTTTGT
GCTGTACCCCATGGGGTTTTCATGCAACCACTACCTTgaaattgggtaac
ttgcattagTTGAGGGAAACTTGTGCATCATAGGCATAGGCGGCATagcc
atcaaaacaaataaaagagtcccctgcccagttggcaaCCGGTCTAGTTG
GCAACCaaacgtctttgaacccagaaaagtcatacaaaaaaaaacctctg
gagaatttctattggtagttatctgccttgacctatttcccgtatatact
gtgtaaaaaaagttttagaaaaaaacgagtagaatccgaaagatccaact
ttgcagaagcacacgaaaaagctggatttttcaaaaaaaataaaaaatgg
ctacctgtacacgtaagaaaaaacgcttcaactcccactccaaaaaatac
ttgtccaaaagTATGAGTATGTTAGAAAGAATTTCTGTAAAAGTCAGCTC
GATACAGTTTCCCNTCCAAAAGTATGAGTATGTTAGAAAGAATTTCTGTA
AAAGTCAGCTCGATACAGTTTCCCTCgtgtgaaatattgataaaaaagtt
gatgcaattAGCTTCGATATTTGAcatccagtctgcgaccgaccaaactc
aaaaaaaatgaaaaagaatactccacattgcaatcaaaacattctAGACG
CAActagagaaaaaaagaagactttacatTACGATCAAAACTTGACAGCA
TAGCTCCAATGCAAAGTTTCTAGCTCTGGATTGAAATAACAAGGGAAACT
GGTATATTAAACTCCGGGTAgacataaaaaaatttttttcaaatgaagac
tctccatagactgccactttcacaacaaaacaaaaacaaactttagaaaa
aaatggcaacttgaagaaaaattctgaaaaacatgccgaagggaaatgta
agtaagctattttaaaacaaaagaacgagtgtaaataaatttaatacgGG
AAGGCTTATGAGTTTATGATCAATTAATATGACCTTTTACCTGcagtaga
gcactgattttctctttCTTAAGATCGGTTGCAGACTAGTACgtcggtcg
ggaactgggcactagtaccgctcgcttcgaaagttttttattctaagaag
agcgcctcaaataaaaattttttcaaaaaagtaaaaagttagtgaaaaat
ttgaatcaaaaaatttcggtcgccaactgggcagggtactcttgaaggct
tcttcataaagacgaaagacatgtatctatttttcggatccggtatgcAG
GAATAGTGTCATGACCTGCAGGcaacctggtagggttgggtatgggtgtg
gtttgggtgtggttacgtatcagactGGCTAGGAAtcgggttattatcag
ttagggttagggttgaaattgattttctcttaatacagtctggtctgcag
tttgtacaatataaatagccgtcagaagcgCTACCCTGGCATGAATctgt
ggcgcagtggataaggcaatgggtttcaaaacatcggaactttgcattta
gtgggttcgaatcccaccggtggcgatctgtcggtaaNNNNNNNNNNNNN
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NNNNNNNNNNTTCTTAAAGGTCTTAACAGAAGGTAGATCTCTTATATTCT
TAGAATCTCATACTTGCCGCATGAGTAGTGCATAACAATCCttgttattc
aaaaaacttaaCATCCTCATCATTTTATATATACAAAAGTTCTCTTTTTG
ATTTGGTCCTATTAGACAAGGGCGGTCCTTACAAATTCGAAATAGCATAT
TTGtcagattgttttgttttcacccatcccgtTAGAGCTTCAGTGTGGTG
ggaagaaaacaatcacaatctgatctcaggttaaaaAGTACCGTGAGATC
AGATAACTTGCATAAAAGGCAttgtggtatagtggacatcaaccttgatt
tCTGTACAGGCGGCCAAGGTttgattcccactcacaacggttcacttggc
aagtaaaCAAACCTTAGCCCGGGTCGACCCAtcccatgtgaggggaattg
ggtagtcagttcaaggtgctgacggtgatgcttactcaaagcatctatag
ttgtgAGAATGGGCTccagagcctcctgtaactcaaccataatagataGA
TATATCAGTGGATGCTAACTTGAATAGCTCTCAAATGAATggcctggctg
gtcattaaaatacaaattcaaatcaaaacaaacctgacaattagtcacac
taggaaatcaagctttcagaaaaaataacatcagtcatctacaggattca
tttgcaacaacaaggatgagagttacctgaatcaagttagCAAGACAAtt
tattaaaacttgaaagtttgaaacaaaataaaacgtgcagcagccaaaat
ccaccaaccaaaatttgtcattcaattcccaagacagcgcttcaattttt
aaggccttgtttatacgctaaagtaaaaacaactctgcacatgtaaatgg
gtcaatgtttgaggtctggcaaaatttccaggagataGCTTATCCGGCAG
TGTGCGGATCTACGTGGGTTTCGTCTCCCCCATAGATCTtattcttggga
agttgatcttcaaattagttctcaaggttgggttggctcaaattttttca
tctatggctcaaattttaggcaatttctcatagtttttgagaatgttaat
tACATTAAAAAGTGCCGGGttgttttttcatgaatccctttataAGTTTT
GCCAGGTTTTACGGTGCatatttttgcttgagagtcaaaaggtaaacgat
atagcgctttcgcagcattaatctttgatatgtaTTTCggtgggacgcta
gtgtgacgaACTgcctgatttacaaaatttacggATTGTAAAATGTATAA
TCTCCTAAACATAAAAGTGATATCATGCATTATGTTGGGTATTCCTAAAA
GGTAGGGTACCCCAATTGGGCTGCTACTATGTATCGAGAATGGGCCTTCG
GGTCTGATGTTACTTAAAAACCCatttaatttacagaccagaaaaaccGG
AAATTTGTGGAGGAAAGCCAGGAGTTATGATTctaaagaatatttcaatt
aaTATTGCACGATGCAAAAGATATTCAAAGATACATTAATTACCATGTGA
TCAAAGCATAATGGTGTATGAAATAGAGCTTAGTGACAAGGGGTTTATAT
ATGCCTAATACATAATATGGGTAGCtacttcaaaaatgataataACTCGA
CCCATTGAAGTAAGTCATTATGTTATTGTGTACATAATAGATTAAAAgac
aaaagattgaaaatatATAAGAGTCTGATGAAAGatcaaaatgatcaatt
tgTAAAGTGGCAGCTTTTAACAACAAATTTAGAGACTTTTAAATAGAAAT
AAGataaagaataacaaaattaNAgcgcttcaatttttaaggccttgttt
atacgctaaagtaaaaacaactctgcacatgtaaatgggtcaatgtttga
ggtctggcaaaatttccaggagataGCTTATCCGGCAGTGTGCGGATCTA
CGTGGGTTTCGTCTCCCCCATAGATCTtattcttgggaagttgatcttca
aattagttctcaaggttgggttggctcaaattttttcatctatggctcaa
attttaggcaatttctcatagtttttgagaatgttaattACATTAAAAAG
TGCCGGGttgttttttcatgaatccctttataAGTTTTGCCAGGTTTTAC
GGTGCatatttttgcttgagagtcaaaaggtaaacgatatagcgcttttg
cagcattaatctttgatatgtaTTTCggtgggacgctagtgtgacgaACT
gcctgatttacaaaatttacggATTGTAAAATGTATAATCTCCTAAACAT
AAAAGTGATATCATGCATTATGTTGGGTATTCCTAAAAGGTAGGGTACCC
CAATTGGGCTGCTACTATGTATCGAGAATGGGCCTTCGGGTCTGATGTTA
CTTAAAAACCCatttaatttacagaccagaaaaaccGGAAATTTGTGGAG
GAAAGCCAGGAGTTATGACTctaaagaatatttcaattaaTATTGCACGA
TGCAAAAGATATTCAAAGATACATTAATTACCATGTGATCAAAGCATAAT
GGTGTATGAAATAGAGCTTAGTGACAAGGGGTTTATATATGCCTAATACA
TAATATGGGTAGCtacttcaaaaatgataataACTCGACCCATTGAAGTA
AGTCATTATGTTATTGTGTACATAATAGATTAAAAGACAAAAGATTGAAA
AGATATAAGAGTCTGATGAAAGATCAAATGATCAATTTGTAAACTGGCAG
CTTTTAACAACAAATTTAGAGACTTTTAAATAGAAATAAGataaagaata
acaaaatttaaaaaaggaaatgatcgaaaaatattttcttaattttacca
AACGAATTTGTTCTgcgtttttcagaaattttattcTGGTCTTTATATTT
CCAAGTAAGAGAAGAAGGAAGACATCCATGGCACCtaaacattataaaaa
aaagtagatTTATAGACTATTGCAACTCAAGTTTTAAAGCAATCTTAAAT
CTGTTTTTTGTAAAGGATCAATCGAAGGTTTTAGTATCATTCATCACAAA
ATCAAGCATCTGTTTATAAAATTTAGGACAAAAAGTGGTACCCCAATAAG
CCTAATTGGGGCCCGAATTGGGGTGCCCTACTTTTTACGAACACCCCATT
ATGTTTTTTAATatcattattaaatttttctcctcGTTCTTCCGTCAGTG
AATTTTAATCattgatttattttattttatttctatcAAAGTTAAATACA
AAGAAATAAATGATGAATTTGTTGTTTTAAATGGGTCTTGTGATGTTGAA
ATGCCAAGAGCAGAAAATACTTCTGCAACATCAATCAACTCTAAAAACAC
TTCAGTGAGTGCCAGTGCTGTTCATCCTACTGAATTACAGGCTAGTGAAG
AGAAATCCAGTCTACAAAATGAACGTGCAGTTGATCATTTATTCACAACC
ACCAATCGTTGTAAAGCATCTCTCTTCATCAATACAGGAGAAAATCGAAC
TATCCACGTGGTCCATTATGCCCAACGAGAGCAAGACTTGTACACACAAT
CAACATTCTCCAAAACAGAGGATGAAAGTTATGAATCTAAAGTTATGTTA
TTCTTTATTCACGGAGTTGGTGGAACTATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009964XLOC_009964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017776-exon-sc0000276-1491911889:4129..4213TCONS_00017776-exon-sc0000276-1491911889:4129..4213Clytia hemisphaericaexon
TCONS_00017776-exon-sc0000276-1510915933:4129..4213TCONS_00017776-exon-sc0000276-1510915933:4129..4213Clytia hemisphaericaexon
TCONS_00017776-exon-sc0000276-1575043694:4129..4213TCONS_00017776-exon-sc0000276-1575043694:4129..4213Clytia hemisphaericaexon
TCONS_00017776-exon-sc0000276-1491911889:10866..11009TCONS_00017776-exon-sc0000276-1491911889:10866..11009Clytia hemisphaericaexon
TCONS_00017776-exon-sc0000276-1510915933:10866..11009TCONS_00017776-exon-sc0000276-1510915933:10866..11009Clytia hemisphaericaexon
TCONS_00017776-exon-sc0000276-1575043694:10866..11009TCONS_00017776-exon-sc0000276-1575043694:10866..11009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:4129..11009 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.77831	9.72795	1.4794	1.4587	0.971959	4.79948	0	3.3956	7.90535	0	0.317729	0	0	0.735444	0	0	5.24677	0.0639021	0	1.42299	0.336791	1.50415	3.80573	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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