TCONS_00017774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017774
Unique NameTCONS_00017774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017774 ID=TCONS_00017774|Name=TCONS_00017774|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATGTCGTCAGAAATCTGACTTTCTGAAGGGCCCCTGTCGCGCGGGAAGAG
GTTGTGCACGGTCCTCTCCTGGCGTGATAAgcgaatatttatttttatgc
cCCAGGCGTTTAAGATCTGACCCGCCGCTAGAAGACGGGGAGGACTTGAA
TGTACAGTGGAATTCAGAGTGACAGTAGAATAAAGTAGACTAGAGTTTTT
CGGCTCGTGCATATTTATTTCAATCCATCCAAATGATATTTATTGTTAAC
TCTGCGCGAGAACCCCATAACTCCGCAGTTCACTCCGTTTGATTCACCAC
CTGTCTCACCCAGGCACTTCCCAACCTTACGGTCCAGTCTCTAAACGACT
CTGCTTCAGCATTCTTTGTGGATGCGCATGG
Run BLAST on NCBI

transcript from alignment at sc0000274:333467..333847

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017774 ID=TCONS_00017774|Name=TCONS_00017774|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000274:333467..333847 (Clytia hemisphaerica)
CCATGCGCATCCACAAAGAATGCTGAAGCAGAGTCGTTTAGAGACTGGAC
CGTAAGGTTGGGAAGTGCCTGGGTGAGACAGGTGGTGAATCAAACGGAGT
GAACTGCGGAGTTATGGGGTTCTCGCGCAGAGTTAACAATAAATATCATT
TGGATGGATTGAAATAAATATGCACGAGCCGAAAAACTCTAGTCTACTTT
ATTCTACTGTCACTCTGAATTCCACTGTACATTCAAGTCCTCCCCGTCTT
CTAGCGGCGGGTCAGATCTTAAACGCCTGGggcataaaaataaatattcg
cTTATCACGCCAGGAGAGGACCGTGCACAACCTCTTCCCGCGCGACAGGG
GCCCTTCAGAAAGTCAGATTTCTGACGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009963XLOC_009963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017774-exon-sc0000274-1491911889:333467..333847TCONS_00017774-exon-sc0000274-1491911889:333467..333847Clytia hemisphaericaexon
TCONS_00017774-exon-sc0000274-1510915933:333467..333847TCONS_00017774-exon-sc0000274-1510915933:333467..333847Clytia hemisphaericaexon
TCONS_00017774-exon-sc0000274-1575043694:333467..333847TCONS_00017774-exon-sc0000274-1575043694:333467..333847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:333467..333847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.317334	0	0.773592	2.26779	2.19807	1.06075	2.85645	1.45358	1.7224	2.01548	0.796483	10.6544	8.62272	2.10171	1.85682	1.39359	1.26967	2.8252	3.2263	0	1.04612	0.265926	3.01812	0.703014	1.01697	1.45198	0.905536	0.508153	0.466505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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