TCONS_00017769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017769
Unique NameTCONS_00017769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017769 ID=TCONS_00017769|Name=TCONS_00017769|organism=Clytia hemisphaerica|type=transcript|length=241bp
ttgaagttttttctcaatttgTAAAAGTTCATCTTTTATCTTGTCTTTCT
TGGATTTGGAGTTGGtgtgtaaaagtttttttgtaatttttcttcttctt
ttttaaagagagTGACGATATCTCTCAGcttttgatttcgtttttgatgT
GGTCTTGGCCTTCACGGGAACTCTGCTTTCGCATATTCTGTAGCATATGT
TGTTGAAGGTTTCCAAAATAACATCTGGGTCTTCAGTATCA
Run BLAST on NCBI

transcript from alignment at sc0000274:207567..207807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017769 ID=TCONS_00017769|Name=TCONS_00017769|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at sc0000274:207567..207807 (Clytia hemisphaerica)
TGATACTGAAGACCCAGATGTTATTTTGGAAACCTTCAACAACATATGCT
ACAGAATATGCGAAAGCAGAGTTCCCGTGAAGGCCAAGACCAcatcaaaa
acgaaatcaaaagCTGAGAGATATCGTCActctctttaaaaaagaagaag
aaaaattacaaaaaaacttttacacaCCAACTCCAAATCCAAGAAAGACA
AGATAAAAGATGAACTTTTAcaaattgagaaaaaacttcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009958XLOC_009958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017769-exon-sc0000274-1491911889:207567..207807TCONS_00017769-exon-sc0000274-1491911889:207567..207807Clytia hemisphaericaexon
TCONS_00017769-exon-sc0000274-1510915933:207567..207807TCONS_00017769-exon-sc0000274-1510915933:207567..207807Clytia hemisphaericaexon
TCONS_00017769-exon-sc0000274-1575043694:207567..207807TCONS_00017769-exon-sc0000274-1575043694:207567..207807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:207567..207807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2764	9.49419	4.00861	5.88269	15.5168	17.9208	7.96552	23.437	10.442	15.7056	22.418	11.1999	4.12055	6.11319	2.01035	3.77547	3.32219	5.44823	1.88175	0.98456	1.71152	2.50446	2.02967	3.69053	6.65202	22.0509	2.42729	0	0.982388	6.00539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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