TCONS_00017766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017766
Unique NameTCONS_00017766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017766 ID=TCONS_00017766|Name=TCONS_00017766|organism=Clytia hemisphaerica|type=transcript|length=553bp
TAAAAGACGAATCAACATTTCCCCTTTCAATACCAAGAAGACGTTTCCAA
TCCACGTTCTCGAATTCTTCTTTGAAACCTACTTCATCAAAGTTTGACCA
ATCTCGACGAGAAGGAAGTTCAGGTTTATAGTGAGAGCTACAATCGGTGT
TTAGAATAAAAAATTGTGGAAGGTGATCGGATATCGAGACAGTGAGGTTT
CCAGAAATTGAAGAGCAGTTAAGAGGAGAGACAAAAATATTATCAATGAG
AGTACTTGAAGTATCAGTGATCCGCGTTGGAAGAGTAACAGATGGAAGAA
TTTGATAGGCACCAAGGACGTCAAGAAATTTGGAGTGAGAGATTTCAGAA
TCACAAATCAAACGATCAATGTTGAAGTCACCCAACAGGACgagattttt
gttttcttgacaagACTTTCGCAACAAAGGAGTTAagattttttcgttaa
aaagaTCAATGTCGAAAAGAGGGTGTTTATAAATACATCCAACAATGAAA
TTTTTACGGTTTTTCAGGACAATTTCAGCAAAGGTGGATTCAAGGTTGCC
AGA
Run BLAST on NCBI

protein sequence of TCONS_00017766-protein

>TCONS_00017766-protein ID=TCONS_00017766-protein|Name=TCONS_00017766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
SGNLESTFAEIVLKNRKNFIVGCIYKHPLFDIDLFNEKILTPLLRKSCQE
NKNLVLLGDFNIDRLICDSEISHSKFLDVLGAYQILPSVTLPTRITDTSS
TLIDNIFVSPLNCSSISGNLTVSISDHLPQFFILNTDCSSHYKPELPSRR
DWSNFDEVGFKEEFENVDWKRLLGIERGNVDSSF
Run BLAST on NCBI

transcript from alignment at sc0000274:167146..167698

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017766 ID=TCONS_00017766|Name=TCONS_00017766|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0000274:167146..167698 (Clytia hemisphaerica)
TCTGGCAACCTTGAATCCACCTTTGCTGAAATTGTCCTGAAAAACCGTAA
AAATTTCATTGTTGGATGTATTTATAAACACCCTCTTTTCGACATTGAtc
tttttaacgaaaaaatctTAACTCCTTTGTTGCGAAAGTcttgtcaagaa
aacaaaaatctcGTCCTGTTGGGTGACTTCAACATTGATCGTTTGATTTG
TGATTCTGAAATCTCTCACTCCAAATTTCTTGACGTCCTTGGTGCCTATC
AAATTCTTCCATCTGTTACTCTTCCAACGCGGATCACTGATACTTCAAGT
ACTCTCATTGATAATATTTTTGTCTCTCCTCTTAACTGCTCTTCAATTTC
TGGAAACCTCACTGTCTCGATATCCGATCACCTTCCACAATTTTTTATTC
TAAACACCGATTGTAGCTCTCACTATAAACCTGAACTTCCTTCTCGTCGA
GATTGGTCAAACTTTGATGAAGTAGGTTTCAAAGAAGAATTCGAGAACGT
GGATTGGAAACGTCTTCTTGGTATTGAAAGGGGAAATGTTGATTCGTCTT
TTA

Coding sequence (CDS) from alignment at sc0000274:167146..167698

>TCONS_00017766 ID=TCONS_00017766|Name=TCONS_00017766|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000274:167146..167698 (Clytia hemisphaerica)
TCTGGCAACCTTGAATCCACCTTTGCTGAAATTGTCCTGAAAAACCGTAA
AAATTTCATTGTTGGATGTATTTATAAACACCCTCTTTTCGACATTGAtc
tttttaacgaaaaaatctTAACTCCTTTGTTGCGAAAGTcttgtcaagaa
aacaaaaatctcGTCCTGTTGGGTGACTTCAACATTGATCGTTTGATTTG
TGATTCTGAAATCTCTCACTCCAAATTTCTTGACGTCCTTGGTGCCTATC
AAATTCTTCCATCTGTTACTCTTCCAACGCGGATCACTGATACTTCAAGT
ACTCTCATTGATAATATTTTTGTCTCTCCTCTTAACTGCTCTTCAATTTC
TGGAAACCTCACTGTCTCGATATCCGATCACCTTCCACAATTTTTTATTC
TAAACACCGATTGTAGCTCTCACTATAAACCTGAACTTCCTTCTCGTCGA
GATTGGTCAAACTTTGATGAAGTAGGTTTCAAAGAAGAATTCGAGAACGT
GGATTGGAAACGTCTTCTTGGTATTGAAAGGGGAAATGTTGATTCGTCTT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009955XLOC_009955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017766-exon-sc0000274-1491911889:167146..167698TCONS_00017766-exon-sc0000274-1491911889:167146..167698Clytia hemisphaericaexon
TCONS_00017766-exon-sc0000274-1510915933:167146..167698TCONS_00017766-exon-sc0000274-1510915933:167146..167698Clytia hemisphaericaexon
TCONS_00017766-exon-sc0000274-1575043694:167146..167698TCONS_00017766-exon-sc0000274-1575043694:167146..167698Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017766-proteinTCONS_00017766-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:167146..167698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13516	0.666217	1.9582	1.44118	0.462728	0.493151	0.806942	0.714913	0.484856	0.10765	0	0.532289	0.370065	0.925281	0.345032	0.690136	0.309686	0.256145	0	0.573613	0.297495	0.240552	0.798067	0.326233	0.847711	1.58149	0.169213	0	0.541241	0.311579
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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