TCONS_00017765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017765
Unique NameTCONS_00017765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017765 ID=TCONS_00017765|Name=TCONS_00017765|organism=Clytia hemisphaerica|type=transcript|length=832bp
TTCGCGTGTtcataaaaatggtagattttgTTATTTGCATCACACGTCGT
TCAAACCTGTTACAAGTCGTATTCTCGAAACTTCAATGTTCAAGATTATT
AAAATAATATGGCACCTAAGAAGAAGGCCCAAACACATTCAGCAACCATT
TCAGAGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGACATC
GGTAAGACAAGGGATACAACCCTAATTAAGGGTACCAACAAAACCAAAGT
TTACCACAACAGCAAGGGGCTCCATTAGCACAAGGGGGTCAAAGGGGCTA
CAACAGTAAAACACCTCAACAAGGTAATTTTTTCGAACCTATAGCttgtc
agcaaaaattttttcaatctcCGGGAAGACAAGTTTGACAGGGTAGACGA
AAAAAGGGGAAAAgacaattctttttttaaaagctcaaatcAATACTATG
AAAACTAAACAATCTGTATatgactttgaaaaaatatcaaataagcaCCA
ATACATGTTTGTTCAAAATATATACGAACTAAATAACGagacaaaagttt
tatcttatGTGGTCGATAAAATTGAGGATCAATTAATTAAACGCAAGAAA
ATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACAACCAATGA
ATATTTGCCCAAAGGTTTTACAGATGATTCGAATAACGATTCCAAGCTTC
GAGGAGCANCAATATTTGCCCAAAGGTTTTACAGACAGCTTGGTAAAACC
CGTGTGTTTTCATCATGAGAAATATCTCGCAAGTCATCAATGACGTAagc
aattaacaaaagaaaaaaaagaaagatcaaag
Run BLAST on NCBI

protein sequence of TCONS_00017765-protein

>TCONS_00017765-protein ID=TCONS_00017765-protein|Name=TCONS_00017765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MKTKQSVYDFEKISNKHQYMFVQNIYELNNETKVLSYVVDKIEDQLIKRK
KIIKYVDSSIEGWDTTNEYLPKGFTDDSNNDSKLRGAXIFAQRFYRQLGK
TRVFSS
Run BLAST on NCBI

transcript from alignment at sc0000274:155731..156562

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017765 ID=TCONS_00017765|Name=TCONS_00017765|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000274:155731..156562 (Clytia hemisphaerica)
ctttgatctttcttttttttcttttgttaattgctTACGTCATTGATGAC
TTGCGAGATATTTCTCATGATGAAAACACACGGGTTTTACCAAGCTGTCT
GTAAAACCTTTGGGCAAATATTGNTGCTCCTCGAAGCTTGGAATCGTTAT
TCGAATCATCTGTAAAACCTTTGGGCAAATATTCATTGGTTGTGTCCCAC
CCTTCTATGGAACTATCTACGTACTTGATAATTTTCTTGCGTTTAATTAA
TTGATCCTCAATTTTATCGACCACataagataaaacttttgtctCGTTAT
TTAGTTCGTATATATTTTGAACAAACATGTATTGGtgcttatttgatatt
ttttcaaagtcatATACAGATTGTTTAGTTTTCATAGTATTgatttgagc
ttttaaaaaaagaattgtcTTTTCCCCTTTTTTCGTCTACCCTGTCAAAC
TTGTCTTCCCGgagattgaaaaaatttttgctgacaaGCTATAGGTTCGA
AAAAATTACCTTGTTGAGGTGTTTTACTGTTGTAGCCCCTTTGACCCCCT
TGTGCTAATGGAGCCCCTTGCTGTTGTGGTAAACTTTGGTTTTGTTGGTA
CCCTTAATTAGGGTTGTATCCCTTGTCTTACCGATGTCAAAATACCTTTA
TCAACAACAGCCATTAAATCGTCCGTCTCTGAAATGGTTGCTGAATGTGT
TTGGGCCTTCTTCTTAGGTGCCATATTATTTTAATAATCTTGAACATTGA
AGTTTCGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGATGCAAAT
AAcaaaatctaccatttttatgaACACGCGAA

Coding sequence (CDS) from alignment at sc0000274:155731..156562

>TCONS_00017765 ID=TCONS_00017765|Name=TCONS_00017765|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000274:155731..156562 (Clytia hemisphaerica)
TCATGATGAAAACACACGGGTTTTACCAAGCTGTCTGTAAAACCTTTGGG
CAAATATTGNTGCTCCTCGAAGCTTGGAATCGTTATTCGAATCATCTGTA
AAACCTTTGGGCAAATATTCATTGGTTGTGTCCCACCCTTCTATGGAACT
ATCTACGTACTTGATAATTTTCTTGCGTTTAATTAATTGATCCTCAATTT
TATCGACCACataagataaaacttttgtctCGTTATTTAGTTCGTATATA
TTTTGAACAAACATGTATTGGtgcttatttgatattttttcaaagtcatA
TACAGATTGTTTAGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009954XLOC_009954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017765-proteinTCONS_00017765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017765-exon-sc0000274-1491911889:155731..156562TCONS_00017765-exon-sc0000274-1491911889:155731..156562Clytia hemisphaericaexon
TCONS_00017765-exon-sc0000274-1510915933:155731..156562TCONS_00017765-exon-sc0000274-1510915933:155731..156562Clytia hemisphaericaexon
TCONS_00017765-exon-sc0000274-1575043694:155731..156562TCONS_00017765-exon-sc0000274-1575043694:155731..156562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:155731..156562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0434	10.1601	4.66638	4.57975	1.42714	1.36042	2.30468	1.21379	0.200772	0.790434	1.35285	0.739834	0.530764	0.980856	0.488318	0.997802	0.503573	0.773819	0	0.432123	0.727891	0.566897	3.45815	3.28426	0.528503	0.78906	0.246333	0.473999	3.2333	2.6949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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