TCONS_00017754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017754
Unique NameTCONS_00017754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017754 ID=TCONS_00017754|Name=TCONS_00017754|organism=Clytia hemisphaerica|type=transcript|length=360bp
gtaatttttttcagtaaaGGGTGTTTAAGTTTTCTTGGTATATCATGTTT
ATGTTTTCTggtataaacttatttaaattttttctaatgAGTGCTAAGGA
ACCATGTTTCTTACCTCTATGTTATAAACCTTAGCCATGAGGTAGCGGAA
ACACTAACAGCTGAATGGTGGCATAACTCAAAAGAAATCTTAGGTATTTC
AAAGTATATTAGGAGAGTATTAATGTCTTACCGTCTTCATTTTCGAAATG
TGTTGGTGTTGTGGTAGCGTTGGCCATTTTGCTTTAAATCTTTAGTTGAA
AGTATTGAGTTGAAAGTCTTGAGTTGAAATGTATGGTGTTTTAAAATTCT
TGGGGGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000274:255..614

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017754 ID=TCONS_00017754|Name=TCONS_00017754|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0000274:255..614 (Clytia hemisphaerica)
AAAACCCCCAAGAATTTTAAAACACCATACATTTCAACTCAAGACTTTCA
ACTCAATACTTTCAACTAAAGATTTAAAGCAAAATGGCCAACGCTACCAC
AACACCAACACATTTCGAAAATGAAGACGGTAAGACATTAATACTCTCCT
AATATACTTTGAAATACCTAAGATTTCTTTTGAGTTATGCCACCATTCAG
CTGTTAGTGTTTCCGCTACCTCATGGCTAAGGTTTATAACATAGAGGTAA
GAAACATGGTTCCTTAGCACTcattagaaaaaatttaaataagtttatac
cAGAAAACATAAACATGATATACCAAGAAAACTTAAACACCCtttactga
aaaaaattac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009943XLOC_009943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017754-exon-sc0000274-1491911889:255..614TCONS_00017754-exon-sc0000274-1491911889:255..614Clytia hemisphaericaexon
TCONS_00017754-exon-sc0000274-1510915933:255..614TCONS_00017754-exon-sc0000274-1510915933:255..614Clytia hemisphaericaexon
TCONS_00017754-exon-sc0000274-1575043694:255..614TCONS_00017754-exon-sc0000274-1575043694:255..614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:255..614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469904	0.687345	0	0	2.85161	2.00301	2.71861	3.6763	2.37587	4.90484	2.03205	1.94299	0.937555	0.649107	0.266827	0.572692	0.176377	0.542344	0.499518	0.784065	0.332769	0.506399	0.269391	0.244916	0	0.225134	0.322166	1.03147	0.521557	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top