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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017753 ID=TCONS_00017753|Name=TCONS_00017753|organism=Clytia hemisphaerica|type=transcript|length=3541bpRun BLAST on NCBI protein sequence of TCONS_00017753-protein >TCONS_00017753-protein ID=TCONS_00017753-protein|Name=TCONS_00017753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=869bp KTQQPVKARFCFFIFQLFTNLDQTFKSRSVHTIMAKLVAVCRDEEFPFERRun BLAST on NCBI transcript from alignment at sc0000274:361085..376135- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017753 ID=TCONS_00017753|Name=TCONS_00017753|organism=Clytia hemisphaerica|type=transcript|length=15051bp|location=Sequence derived from alignment at sc0000274:361085..376135- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000274:361085..376135- >TCONS_00017753 ID=TCONS_00017753|Name=TCONS_00017753|organism=Clytia hemisphaerica|type=CDS|length=39150bp|location=Sequence derived from alignment at sc0000274:361085..376135- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017753 vs. Swiss-Prot (Human)
Match: GGNB2 (Gametogenetin-binding protein 2 OS=Homo sapiens GN=GGNBP2 PE=1 SV=1) HSP 1 Score: 509.22 bits (1310), Expect = 1.172e-164 Identity = 243/364 (66.76%), Postives = 299/364 (82.14%), Query Frame = 1
Query: 100 MAKLVAVCRD--EEFPFERRQIPLMIEETLTMVMEIPETVISAECVTSEN--VAQFVKKYSCLTHGEMAAALMVRQKDLFSLLSVSVPCVGCRRSVERLYNQLYESGQPALEPLTICSKGVLTLSASFLKDAKLIYALFYIHGTHLNDVVDTIPKSKRNKRCILHSLETHKAARASG-WMDVWDLLSQECRDEVVLIDSDSLLDTLETYLRKHRFCSECKSKVLKAYSILAGDTDGDSEKGYCATLYEGLKSCPKERHIHVVCDTDFIAHLIGRAEPELAGGRRERHARTIDIAQEEVLTCLGIHLWERLHRLWQKLRAEEQTWQILFYLGVEALRKRFETAVEEKQGISQLELVVEEISVAEK 1176
MA+LVAVCRD EEFPFERRQIPL I++TLTMVME P+ V++ + + + QF++++ L +++ A++V +++ S LS VPCVGCRRSVERL++QL ESG PALEPLT+ KGVL+++ S + DAK +Y LFY+HG+ LND++D IPKSK+NKRC LHSL+THK G WMDVW+L+SQECRDEVVLIDS LL+TLETYLRKHRFC++CK+KVL+AY+IL G+ D EKGYCA LYEGL+ CP ERHIHV C+TDFIAHL+GRAEPE AGGRRERHA+TIDIAQEEVLTCLGIHL+ERLHR+WQKLRAEEQTWQ+LFYLGV+ALRK FE VE+ QGIS+LE + EE S E+
Sbjct: 1 MARLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHGMLKQQDLSIAMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVLSVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCLGIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALRKSFEMTVEKVQGISRLEQLCEEFSEEER 364 The following BLAST results are available for this feature:
BLAST of TCONS_00017753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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