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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017741 ID=TCONS_00017741|Name=TCONS_00017741|organism=Clytia hemisphaerica|type=transcript|length=1658bp GTACATCTCTTCGCTTAAAGCCttaaagatttcaaataaaattgattttc ttcgattgtttttttcagttttagaCCTTACAAATATTTCCAATTCAAAA GATAATTTCACTTGACAAACAATGACGACTGAGGAAAAACTTTCATGGTA TCAAAAAAGCAACTTCTTTGTTTACAAGAATCTTCTGGTTGTTTCATTGG CTgcattttgtaatttctttgcatTTAGTAGTACTCAAAGCTTACAAAGT AGCCTAAATAATGAGAGAGGCTTCATAACATTATGCGTTTTGTATGCATT TTATGGAGTATCTTCGCTGTTTTTACCGAAACTTCTGATTACGTGTATTG GATTCAAATTTTCGATAGCTCTGACAATTTTTGGATACACAATCTTTCAA ATGATTCAATTTCACCCAACGACTGGCATGATGATTTTCGGAGCTATAAG TGTTGgTTTTTCAGGGTCAGTCTTTTGGGTTGCTGTACCCTCTACAATCA CCGTGTTGGCTCGTCAACATTCACAACACACTGGAAAAGACTTTGAAATG ACCAATCAGAAGTTTTATGCAGTGTACtatttcatatttcgatttgcCCT TGTACCCAGTAACCTGTTACTATCTTCTATCCTCAAGAACAatgACAGGA AGGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGTGTGGT ATAAAAGCATGCCCAACATTAACCAGCCCACTGTCACATGTCAACATAAA AGACGTCCACAGGTTATTCTGGATTTATTTGGAAGTTGGTCTTTCAGGAG TGCCAATCATTTTGCTCttcttttcaaacatcaaagaaCAAAAAGACAAC CAGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAGTTCT GAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATATCCATTG CGCTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAAGATCGGG TTCTTCATCATCATTATAACGTCATGGGCATGCGCGAGTACCATCATGAT CAGTTTCTTCTTCTGGAATGTTGCATCATCTCCTCCTGCTGTTCTTCTCG TCATCAACATTCTGTTCGCGATGGCTGAAGGTGCTCTCGCTTCACAAATT CATGGTTACtatggtgtgatttttttcgaGCGGAAAGCAGCAGCCTTCGC CACTTACTCTATAGCAAGATGCATCGGTGATACCATCAGTTTTGCTTATG GAAACAGTGTTTGTATGGTGACAAAAGTTGTGATTCTTCTACTAGTGAAC TTCGTTGGAATCTGTTTGTTTTGTCATGTTTATTTTGACAACCAACggtt gaagaagaagaaaatgattcaGGCGTTGCAACCCTCGTAAAATAACAATC ATATCAAACGTCGTATCTCAGTGTATTCTGATTCTGAGCGTTATATTTTG TATTCCTCATTCCTTCCGACGATAGTCCTTCTTCCCGTATCTATTCAAGT TGTTaggtatttatatattttacacacaCAGCATATACATTATATGACAc ttatatattttatacacaCATCATATACATTATATGAAacttttcttgta agaagaaccaatatttttggatatcaaggaaataatgtttaaaataaCAA TCATGTAT Run BLAST on NCBI transcript from alignment at sc0000274:137957..144268- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017741 ID=TCONS_00017741|Name=TCONS_00017741|organism=Clytia hemisphaerica|type=transcript|length=6312bp|location=Sequence derived from alignment at sc0000274:137957..144268- (Clytia hemisphaerica) GTACATCTCTTCGCTTAAAGCCTTAAAGATTTCAAATAAAATTGATTTTC
TTCGATTGTTTTTTTCAGTTTTAGACCTTACAAATATTTCCAATTCAAAA
GATAATTTCACTTGACAAACAATGACGACTGAGGAAAAACTTTCATGGTA
TCAAAAAAGCAACTTCTTTGTTTACAAGAATCTTCTGGTTGTTTCATTGG
CTGCATTTTGTAATTTCTTTGCATTTAGTAGTACTCAAAGCTTACAAAGT
AGCCTAAATAATGAGAGAGGCTTCATAACATTATGCGTTTTGTATGCATT
TTATGGAGTATCTTCGCTGTTTTTACCGAAACTTCTGATTACGTGTATTG
GATTCAAATTTTCGATAGCTCTGACAATTTTTGGATACACAATCTTTCAA
ATGATTCAATTTCACCCAACGACTGGCATGATGATTTTCGGAGCTATAAG
TGTTGGTGAGAATGCTCATTAAGAAGTCCATCTTATTAAAATTATTTGAT
TCATTTTGATCACTTTTGAGCCATTCTGAGGTAATTCCTTATATCTCTCT
TTGAAGCGTAACCCGCTTGGTGGTACACTGATTGGCCCATCTTCGGCAGC
TTTTATCTCCGTGGTGCTCCCGTAGCTACGTAGTTCGAAAGACCATACAA
TTTTGATTTGGATGTCGCTTTGAAAGTTCTACATTTATTTTTTGAAAAAG
TGCAAAGCTCTAGGTCTGAAAGGGTTAAGCTCCAACAATCATTGCTTAAA
ACCTACATTATTCTTGGGCTTGAATAATTGAAATATAGAGGGCATTTTTT
TTTAACTAAATCTAAATGTAAGCTTATTTTTTCGATTGCACCTGTGACAA
CAAATCGGATTTGAACTGAAATATGATACCTTATCGGGGAAAAATATCGG
AGTTTTATTTCGTCGGGAAAAAATTTTGTCACCCAGAGGCATTTTCGTCA
CTTTTCCCCGACCAAAATTTCAAATTCGTCACTTTTCCCCGACCAAATTT
ACAATTTAATCACTTCCACCTGACTAAATTGTTCAAACGAAATGGTTTCC
TTCACTAGCTCGAAAATAGATCTTGTAATTCGACGTTTAAAGCACTAATT
TCGGCTAATAAAGGCGTAAAAGAATTGGATTTGAATTTTGGTTGAGGGAA
AAAAGTCGAGTAAAAGTTTTGGTCGGATGATAAAATGTCGGGGATAAAAT
TCGTCGGGGAAATATTTCGTCACCCCCTCAAAATTTTCGTCACTTTTAAG
ACGAGTTTCATCTAAAAGGAACAAGTGAAGACGGGAGTTTTTTTCAGGGG
TAGCTGTTGTTTTAAACACAGACTCTATCCGCCGCGCAACATATTACGTT
TATTAATATATAAACTATGTTATATCATAATTAGTATATTATACGGATGA
TAGCATCCCGATAAGGTAATCAAGATAGAACCAGAGTGTTTGTGTCAAAT
TTTGGTTTTATAGAATATTTCTCATCGACATAGCAGCACTCGTTTTTTTC
TTCTTCTTCCAGGTTTTTCAGGGTCAGTCTTTTGGGTTGCTGTACCCTCT
ACAATCACCGTGTTGGCTCGTCAACATTCACAACACACTGGAAAAGACTT
TGAAATGACCAATCAGAAGTTTTATGCAGTGTACTATTTCATATTTCGAT
TTGCCCTTGTACCCAGTAACCTGTTACTATCTTCTATCCTCAAGAACAGT
GAGTTCAACATTTTTTGCTTACTATATTCACAATGAAACAATCCCTTGTT
CCCCCTAAAAGTTTGGTCTTGATAGGAAAAATATCCGAAAAATCTCATGG
CTTTTGTAATAAATGAGGCCCTCCCAGTCACCTTTCAAATCACGCAAAAA
AAGTTCAAAAAAACTTAGAGAGAGGTGAACCGGAGAACAGTTTCCTCCAC
CTAAGCTACATACCTAACAAAATCCTTTTTTAAATAAATGAACCATAAAA
AGCCAAGATTGCAAGTCAGAATTCTACATTGTAAATTTGTCGTTCTTTAA
ACCATTATGAAATCAATTCCCATGATAATCAAAGCGGATTGAATACGTAG
AGGTGGTACAGTCACTTTCGGTCGGGGTTTATGATCTGTAAAGCCCGAAG
GGCTAGAGTTTTTATCGAAAAGGGAAGCCTAGGTTTGGAAGGATTTCCTA
CCAAAGTCACGTGACTAAAATATGCAATTTCACCGGTTTGAGAGATGTGA
AATAGCGTTTGCCGCCTACTTTTTTTGATCTCGCGCTCCGAAAACAATTA
AAATCCTAGATCCTATCCATCGGCACGAAATTTAAAAAGTCAAATTTTTG
CTTCACTTTTTTTTGCTGGAGAAAGCTTAAAGCTGCCTATCTAGCCCTTC
GGGCTTTAGAGATATCTGTGGTGGTACAGTCACTTTCGGTCGGGGTTGTG
GACGGTGATATTTGTCGTTTTTTATGAAATTTGTCATTCTTTTTGTCTAA
TTTTAGTTAATGCAAGATTCTTTATTAGATAAACCCCCTCTTAATGGGGG
ATGGATTAAAAAAATCAAAAAACAAAACACATTTTCTTTTTAACGATATT
TCGATCTTTACAGATCTTTATCAAGTTTTTAAAAATAATTTTTAGATGAC
AGGAAGGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGTG
TGGTATAAAAGCATGCCCAACATTAACCAGCCCACTGTCACATGTCAACA
TAAAAGACGTCCACAGGTTATTCTGGATTTATTTGGAAGTTGGTCTTTCA
GGAGTGCCAATCATTTTGCTCTTCTTTTCAAACATCAAAGAACAAAAAGA
CAACCAGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAG
TTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATATCC
ATTGCGCTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAAGGT
ACGGTTGTTTTAGACTGGCACGTCAGTCGGGCTGGAACGGTATCACGCGG
GAAAAGTGAGCGTAGGAGTTAGGTAAGCGTAGGAAAATAAATTTTGTCGG
TGGCAAGGGCTGAAAGCTAATCAGCAGCCTCTCACCAACTTTTGCTCGTT
CTCCTACGCAGCTCCTATTCTACCAAACGTCCGCCGCCTTTATGTTCCCG
TCCTCTGACGTGATTAATTAACAGACTAGTTTGCTAGTCTACGGTTGTCT
TTATTATCATTTTCATTTGGTTTTAACTCTAATATCAGAGCGATTGCCTT
TCTCCTTTGTTGAAATTTCAAGTTCAAAAGCAAAATGTACCTACCCTAAT
ATCTTGTTCATTAGGGCTTTTGTATATAGTAAACCAGTATTTAGACCATT
TTCGCGCGTAACGGAATACAGCCATTCTATTGGTTAGAAGTGACGTAACA
CTTGAATGTAACCAATAGAATGGCTTCATTTCTTATTATAGTTTCCACAA
AAAATATTAATTTTGCTGAAGTTTTTTGAATTTCTTTTTCTTTAAACCAT
CTTTTTACCCCTTCAGAATTTTGCAGCATGTGCTTTTGGAATTGAATACA
TTGGTTATGTCATTATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTG
ACGGTTTATACACTCATTGAAAAGGTTGGTTTAAAATGCTTGCACTTATT
CCTTTTCGACCGTAGTCGCACGGCATTTTTTGTCCACTTTATCCCACTAA
TACCGTCCCAATCCTTTTTTGACGCATTTTTCTATCGTCTATAGGTGCGA
AAAAAGGACTGGGGCGGCTTTAGTGGGATAGAGCAGACAAAAATAAGCCC
GCGTGAGTACGATCAAAAAGGTGTATTATTCCAAAACATGAACTGTTTGT
GAAATACTTTTAGAGAGTACCTTTTTAACTTTAATCTTTAGAATTAAACG
GCAACCCCTTCTCACAGACCCACTGGGAGCCCTTCCCACTGGATAATATC
GTCCCCAGTGAAAATTATCCGCCAATCTTTGTCCTCACTGAAAATAATCA
AATAAACCAATCCTCACTGCAAAATGCTATGCTCTTTTCAGCCCAATCCC
AACTGAATTTTCGGACTTGAAAACAAAAGAATTGAAATCCAAAGTCATAG
AAATACGAGAATATTAATTCGAGTTTCAGTCCGTTATTTTTATCCCCACT
GGCTGAAAAAATCCCACCGGGTCTGTGAGAAGAGGGTCTCATATTATGGC
GAGTATTTCGAGAATGGATAACATCAATCGTATGATATGATGCTGGGAAT
CGGAAGAGGAACTATAATTATGTATTGCCGGGTATGTGCAGAGCATTCCC
CCGAACCCTGAATAACAAACCCGATCCTTAAGCATACCCATATTTAGCCT
GAGCCTCTACTCTGTACCAGAGTGTATCTCATGTTTATCGTTTCGTAGTA
CACTCTTTGCGCATTGTCTGTTTTGTAAAAAATTCCTCTACAGAGACCTC
TGCGATGAAGAATAATTTATAAATAGCAACACTTCTTTCGTCGTCTCCCC
TCTCTCAATCGCACTCCATCGCAGTGTTCCGTTTGAAAATCTAAATTTAG
AAAAAAAAATGACAACAGATCCTCTACGGCAATGAATTTTGAAATAAGCC
GTAGATATCGGGTCTGTGTACAGACTACCCCCCCCTCGGACTGTGATTTT
ATTTGATAATTGTTTTTTCTTACAACCAGATCGGGTTCTTCATCATCATT
ATAACGTCATGGGCATGCGCGAGTACCATCATGATCAGTTTCTTCTTCTG
GAATGTTGCATCATCTCCTCCTGCTGTTCTTCTCGTCATCAACATTCTGT
TCGCGATGGCTGAAGGTGCTCTCGCTTCACAAATTCATGGTAAGATTGCT
GTATACACGTTCTTTTTATAAGACAAACCATAACATAAGGCTTTGATGGC
CAAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCTTTGCGGACTCTAA
AACAGCCAATTTCTTAGGAAAATAGAGAACAATTATCACAAAATGGTTAG
AATATTTTTAAGAACATTTTTAGGCTTAAAGCCCAAAAAGTTAAGAACAT
CTGATGGCTTCAAAAATTTTGGATGTTCTTATAAAAAAACGTGTAAAAGA
AAACTATTCCTAAGTAACAGGCGACTCATAATTAAGAGACTGACTGTTGC
TCCCAAATAAAATCTTCAGATGTGAATTTTATTATATACACTATCAGAAA
GCCTGCAAAACTTACCATAAAGTGTCTCACCTGGGAAGGTGACTTACCTT
AATTTTAAATATATGACGTCACCAAGTGATGACAAAGTAATGTTACAAAA
AGAAACCTGAAATTTAACAGTTGAGTTTTGCGATATTGATCATTCATAAT
TTTGAATAATTTTGCCGGAGAAGCTGGTTTTTATGTCGATTGTCATTGCT
CTGACTTGCGGAGTGATAAAAGGGAACATATGAGAAAACTGCGATACATG
GAACTCTCTCTAATTCGAACTTCCATTCTTCGAATCTTTCTGTACTTCGA
ACCTCAAGTATTGGTCCCCTTGGCTTGGAAATCGTATGAATTGCTCTCTG
TAATTCAAATCTTTCTATAATTCGAAGAAAATTCCTGGTCCCTTGAAGAT
CGGATTAGAGGGAGTAAACTATATTCAATTAGAATGGATACTCAAATGTT
GCGAAATTTAGATTATGATTACAAGTTCAAGGATTGTCTACCTTACAGAT
TCTGCTAAAACATCCTTATCCCTAAACCAAACCATAATGTATAATTAAAA
TTTTTTCCATAATTTGATCCATTATAACAAGCCAACTGTGTATTTATTTT
CTTACCAGGTTACTATGGTGTGATTTTTTTCGAGCGGAAAGCAGCAGCCT
TCGCCACTTACTCTATAGCAAGATGCATCGGTGATACCATCAGTTTTGCT
TATGGAAACAGTGTTTGTATGGTGACAAAAGTTGTGATTCTTCTACTAGT
GAACTTCGTTGGAATCTGTTTGTTTTGTCATGTTTATTTTGACAACCAAC
GGTTGAAGAAGAAGAAAATGATTCAGGCGTTGCAACCCTCGTAAAATAAC
AATCATATCAAACGTCGTATCTCAGTGTATTCTGATTCTGAGCGTTATAT
TTTGTATTCCTCATTCCTTCCGACGATAGTCCTTCTTCCCGTATCTATTC
AAGTTGTTAGGTATTTATATATTTTACACACACAGCATATACATTATATG
ACACTTATATATTTTATACACACATCATATACATTATATGAAACTTTTCT
TGTAAGAAGAACCAATATTTTTGGATATCAAGGAAATAATGTTTAAAATA
ACAATCATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00017741-exon-sc0000274-1575043694:143814..144268 | TCONS_00017741-exon-sc0000274-1575043694:143814..144268 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1575043694:142571..142756 | TCONS_00017741-exon-sc0000274-1575043694:142571..142756 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1575043694:141321..141673 | TCONS_00017741-exon-sc0000274-1575043694:141321..141673 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1575043694:139430..139589 | TCONS_00017741-exon-sc0000274-1575043694:139430..139589 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1575043694:137957..138460 | TCONS_00017741-exon-sc0000274-1575043694:137957..138460 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1510915933:143814..144268 | TCONS_00017741-exon-sc0000274-1510915933:143814..144268 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1510915933:142571..142756 | TCONS_00017741-exon-sc0000274-1510915933:142571..142756 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1510915933:141321..141673 | TCONS_00017741-exon-sc0000274-1510915933:141321..141673 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1510915933:139430..139589 | TCONS_00017741-exon-sc0000274-1510915933:139430..139589 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1510915933:137957..138460 | TCONS_00017741-exon-sc0000274-1510915933:137957..138460 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1491911889:143814..144268 | TCONS_00017741-exon-sc0000274-1491911889:143814..144268 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1491911889:142571..142756 | TCONS_00017741-exon-sc0000274-1491911889:142571..142756 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1491911889:141321..141673 | TCONS_00017741-exon-sc0000274-1491911889:141321..141673 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1491911889:139430..139589 | TCONS_00017741-exon-sc0000274-1491911889:139430..139589 | Clytia hemisphaerica | exon |
| TCONS_00017741-exon-sc0000274-1491911889:137957..138460 | TCONS_00017741-exon-sc0000274-1491911889:137957..138460 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000274 | supercontig | sc0000274:137957..144268 - |
Blast
BLAST of TCONS_00017741 vs. Swiss-Prot (Human)
Match: UN93A (Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.503e-22 Identity = 104/416 (25.00%), Postives = 185/416 (44.47%), Query Frame = 2
Query: 176 KNLLVVSLAAFCNFFAFXXXXXXXXXXXXERGF--ITLCVLYAFYGVSSLFLPKLLITCIGFKFSIALTIFGYTIFQMIQFHPTTGMMIFGAISVGFSGSVFWVAVPSTITVLARQHSQHTGKDFEMTNQKFYAVYYFIFRFALVPXXXXXXXXXXXXDRKVNYHTNSTLQMNLQCGIKAC---PTLTSPLSHVNIKDVHRLFWIYLEVGLSGVPIILLFFSNIKE-QKDNQEEDVWVVVKDNLVAVLKIFREMYILELFIISIALGMVHSFMIGDMTK-----------IGFFIIIITSWACASTI-------------------------MISFFFWNVASSPPAVLLVINILFAMAEGALASQIHGYYGVIFFERKAAAFATYSIARCIGDTISFAYGNSVCMVTKVVILLLV 1297
+N+LVVS F A+ QSLQSSL +E G L LY +SS+FLP LLI +G K +I L++ GY F + F + +I +I +G + W A + +T+ H++ GK + +++ +++ IF+ + V + + T Q+ CG C T T+ + + V+ L IY G+ V +I F I++ Q++++ E V L++ K++R+ + L ++ + G+ F+ + T+ +G+ +I ++ ++ MI+ W + AV V + L+ +A+ +Q + YGV+F + K AAFA Y + +G I+F Y +C+ K+ ILL V
Sbjct: 6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGV---WGNLISSLVFGQTPSQETLPEEQLT-SCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGV 417
The following BLAST results are available for this feature:
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