TCONS_00017741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017741
Unique NameTCONS_00017741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017741 ID=TCONS_00017741|Name=TCONS_00017741|organism=Clytia hemisphaerica|type=transcript|length=1658bp
GTACATCTCTTCGCTTAAAGCCttaaagatttcaaataaaattgattttc
ttcgattgtttttttcagttttagaCCTTACAAATATTTCCAATTCAAAA
GATAATTTCACTTGACAAACAATGACGACTGAGGAAAAACTTTCATGGTA
TCAAAAAAGCAACTTCTTTGTTTACAAGAATCTTCTGGTTGTTTCATTGG
CTgcattttgtaatttctttgcatTTAGTAGTACTCAAAGCTTACAAAGT
AGCCTAAATAATGAGAGAGGCTTCATAACATTATGCGTTTTGTATGCATT
TTATGGAGTATCTTCGCTGTTTTTACCGAAACTTCTGATTACGTGTATTG
GATTCAAATTTTCGATAGCTCTGACAATTTTTGGATACACAATCTTTCAA
ATGATTCAATTTCACCCAACGACTGGCATGATGATTTTCGGAGCTATAAG
TGTTGgTTTTTCAGGGTCAGTCTTTTGGGTTGCTGTACCCTCTACAATCA
CCGTGTTGGCTCGTCAACATTCACAACACACTGGAAAAGACTTTGAAATG
ACCAATCAGAAGTTTTATGCAGTGTACtatttcatatttcgatttgcCCT
TGTACCCAGTAACCTGTTACTATCTTCTATCCTCAAGAACAatgACAGGA
AGGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGTGTGGT
ATAAAAGCATGCCCAACATTAACCAGCCCACTGTCACATGTCAACATAAA
AGACGTCCACAGGTTATTCTGGATTTATTTGGAAGTTGGTCTTTCAGGAG
TGCCAATCATTTTGCTCttcttttcaaacatcaaagaaCAAAAAGACAAC
CAGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAGTTCT
GAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATATCCATTG
CGCTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAAGATCGGG
TTCTTCATCATCATTATAACGTCATGGGCATGCGCGAGTACCATCATGAT
CAGTTTCTTCTTCTGGAATGTTGCATCATCTCCTCCTGCTGTTCTTCTCG
TCATCAACATTCTGTTCGCGATGGCTGAAGGTGCTCTCGCTTCACAAATT
CATGGTTACtatggtgtgatttttttcgaGCGGAAAGCAGCAGCCTTCGC
CACTTACTCTATAGCAAGATGCATCGGTGATACCATCAGTTTTGCTTATG
GAAACAGTGTTTGTATGGTGACAAAAGTTGTGATTCTTCTACTAGTGAAC
TTCGTTGGAATCTGTTTGTTTTGTCATGTTTATTTTGACAACCAACggtt
gaagaagaagaaaatgattcaGGCGTTGCAACCCTCGTAAAATAACAATC
ATATCAAACGTCGTATCTCAGTGTATTCTGATTCTGAGCGTTATATTTTG
TATTCCTCATTCCTTCCGACGATAGTCCTTCTTCCCGTATCTATTCAAGT
TGTTaggtatttatatattttacacacaCAGCATATACATTATATGACAc
ttatatattttatacacaCATCATATACATTATATGAAacttttcttgta
agaagaaccaatatttttggatatcaaggaaataatgtttaaaataaCAA
TCATGTAT
Run BLAST on NCBI

transcript from alignment at sc0000274:137957..144268-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017741 ID=TCONS_00017741|Name=TCONS_00017741|organism=Clytia hemisphaerica|type=transcript|length=6312bp|location=Sequence derived from alignment at sc0000274:137957..144268- (Clytia hemisphaerica)
GTACATCTCTTCGCTTAAAGCCTTAAAGATTTCAAATAAAATTGATTTTC TTCGATTGTTTTTTTCAGTTTTAGACCTTACAAATATTTCCAATTCAAAA GATAATTTCACTTGACAAACAATGACGACTGAGGAAAAACTTTCATGGTA TCAAAAAAGCAACTTCTTTGTTTACAAGAATCTTCTGGTTGTTTCATTGG CTGCATTTTGTAATTTCTTTGCATTTAGTAGTACTCAAAGCTTACAAAGT AGCCTAAATAATGAGAGAGGCTTCATAACATTATGCGTTTTGTATGCATT TTATGGAGTATCTTCGCTGTTTTTACCGAAACTTCTGATTACGTGTATTG GATTCAAATTTTCGATAGCTCTGACAATTTTTGGATACACAATCTTTCAA ATGATTCAATTTCACCCAACGACTGGCATGATGATTTTCGGAGCTATAAG TGTTGGTGAGAATGCTCATTAAGAAGTCCATCTTATTAAAATTATTTGAT TCATTTTGATCACTTTTGAGCCATTCTGAGGTAATTCCTTATATCTCTCT TTGAAGCGTAACCCGCTTGGTGGTACACTGATTGGCCCATCTTCGGCAGC TTTTATCTCCGTGGTGCTCCCGTAGCTACGTAGTTCGAAAGACCATACAA TTTTGATTTGGATGTCGCTTTGAAAGTTCTACATTTATTTTTTGAAAAAG TGCAAAGCTCTAGGTCTGAAAGGGTTAAGCTCCAACAATCATTGCTTAAA ACCTACATTATTCTTGGGCTTGAATAATTGAAATATAGAGGGCATTTTTT TTTAACTAAATCTAAATGTAAGCTTATTTTTTCGATTGCACCTGTGACAA CAAATCGGATTTGAACTGAAATATGATACCTTATCGGGGAAAAATATCGG AGTTTTATTTCGTCGGGAAAAAATTTTGTCACCCAGAGGCATTTTCGTCA CTTTTCCCCGACCAAAATTTCAAATTCGTCACTTTTCCCCGACCAAATTT ACAATTTAATCACTTCCACCTGACTAAATTGTTCAAACGAAATGGTTTCC TTCACTAGCTCGAAAATAGATCTTGTAATTCGACGTTTAAAGCACTAATT TCGGCTAATAAAGGCGTAAAAGAATTGGATTTGAATTTTGGTTGAGGGAA AAAAGTCGAGTAAAAGTTTTGGTCGGATGATAAAATGTCGGGGATAAAAT TCGTCGGGGAAATATTTCGTCACCCCCTCAAAATTTTCGTCACTTTTAAG ACGAGTTTCATCTAAAAGGAACAAGTGAAGACGGGAGTTTTTTTCAGGGG TAGCTGTTGTTTTAAACACAGACTCTATCCGCCGCGCAACATATTACGTT TATTAATATATAAACTATGTTATATCATAATTAGTATATTATACGGATGA TAGCATCCCGATAAGGTAATCAAGATAGAACCAGAGTGTTTGTGTCAAAT TTTGGTTTTATAGAATATTTCTCATCGACATAGCAGCACTCGTTTTTTTC TTCTTCTTCCAGGTTTTTCAGGGTCAGTCTTTTGGGTTGCTGTACCCTCT ACAATCACCGTGTTGGCTCGTCAACATTCACAACACACTGGAAAAGACTT TGAAATGACCAATCAGAAGTTTTATGCAGTGTACTATTTCATATTTCGAT TTGCCCTTGTACCCAGTAACCTGTTACTATCTTCTATCCTCAAGAACAGT GAGTTCAACATTTTTTGCTTACTATATTCACAATGAAACAATCCCTTGTT CCCCCTAAAAGTTTGGTCTTGATAGGAAAAATATCCGAAAAATCTCATGG CTTTTGTAATAAATGAGGCCCTCCCAGTCACCTTTCAAATCACGCAAAAA AAGTTCAAAAAAACTTAGAGAGAGGTGAACCGGAGAACAGTTTCCTCCAC CTAAGCTACATACCTAACAAAATCCTTTTTTAAATAAATGAACCATAAAA AGCCAAGATTGCAAGTCAGAATTCTACATTGTAAATTTGTCGTTCTTTAA ACCATTATGAAATCAATTCCCATGATAATCAAAGCGGATTGAATACGTAG AGGTGGTACAGTCACTTTCGGTCGGGGTTTATGATCTGTAAAGCCCGAAG GGCTAGAGTTTTTATCGAAAAGGGAAGCCTAGGTTTGGAAGGATTTCCTA CCAAAGTCACGTGACTAAAATATGCAATTTCACCGGTTTGAGAGATGTGA AATAGCGTTTGCCGCCTACTTTTTTTGATCTCGCGCTCCGAAAACAATTA AAATCCTAGATCCTATCCATCGGCACGAAATTTAAAAAGTCAAATTTTTG CTTCACTTTTTTTTGCTGGAGAAAGCTTAAAGCTGCCTATCTAGCCCTTC GGGCTTTAGAGATATCTGTGGTGGTACAGTCACTTTCGGTCGGGGTTGTG GACGGTGATATTTGTCGTTTTTTATGAAATTTGTCATTCTTTTTGTCTAA TTTTAGTTAATGCAAGATTCTTTATTAGATAAACCCCCTCTTAATGGGGG ATGGATTAAAAAAATCAAAAAACAAAACACATTTTCTTTTTAACGATATT TCGATCTTTACAGATCTTTATCAAGTTTTTAAAAATAATTTTTAGATGAC AGGAAGGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGTG TGGTATAAAAGCATGCCCAACATTAACCAGCCCACTGTCACATGTCAACA TAAAAGACGTCCACAGGTTATTCTGGATTTATTTGGAAGTTGGTCTTTCA GGAGTGCCAATCATTTTGCTCTTCTTTTCAAACATCAAAGAACAAAAAGA CAACCAGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAG TTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATATCC ATTGCGCTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAAGGT ACGGTTGTTTTAGACTGGCACGTCAGTCGGGCTGGAACGGTATCACGCGG GAAAAGTGAGCGTAGGAGTTAGGTAAGCGTAGGAAAATAAATTTTGTCGG TGGCAAGGGCTGAAAGCTAATCAGCAGCCTCTCACCAACTTTTGCTCGTT CTCCTACGCAGCTCCTATTCTACCAAACGTCCGCCGCCTTTATGTTCCCG TCCTCTGACGTGATTAATTAACAGACTAGTTTGCTAGTCTACGGTTGTCT TTATTATCATTTTCATTTGGTTTTAACTCTAATATCAGAGCGATTGCCTT TCTCCTTTGTTGAAATTTCAAGTTCAAAAGCAAAATGTACCTACCCTAAT ATCTTGTTCATTAGGGCTTTTGTATATAGTAAACCAGTATTTAGACCATT TTCGCGCGTAACGGAATACAGCCATTCTATTGGTTAGAAGTGACGTAACA CTTGAATGTAACCAATAGAATGGCTTCATTTCTTATTATAGTTTCCACAA AAAATATTAATTTTGCTGAAGTTTTTTGAATTTCTTTTTCTTTAAACCAT CTTTTTACCCCTTCAGAATTTTGCAGCATGTGCTTTTGGAATTGAATACA TTGGTTATGTCATTATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTG ACGGTTTATACACTCATTGAAAAGGTTGGTTTAAAATGCTTGCACTTATT CCTTTTCGACCGTAGTCGCACGGCATTTTTTGTCCACTTTATCCCACTAA TACCGTCCCAATCCTTTTTTGACGCATTTTTCTATCGTCTATAGGTGCGA AAAAAGGACTGGGGCGGCTTTAGTGGGATAGAGCAGACAAAAATAAGCCC GCGTGAGTACGATCAAAAAGGTGTATTATTCCAAAACATGAACTGTTTGT GAAATACTTTTAGAGAGTACCTTTTTAACTTTAATCTTTAGAATTAAACG GCAACCCCTTCTCACAGACCCACTGGGAGCCCTTCCCACTGGATAATATC GTCCCCAGTGAAAATTATCCGCCAATCTTTGTCCTCACTGAAAATAATCA AATAAACCAATCCTCACTGCAAAATGCTATGCTCTTTTCAGCCCAATCCC AACTGAATTTTCGGACTTGAAAACAAAAGAATTGAAATCCAAAGTCATAG AAATACGAGAATATTAATTCGAGTTTCAGTCCGTTATTTTTATCCCCACT GGCTGAAAAAATCCCACCGGGTCTGTGAGAAGAGGGTCTCATATTATGGC GAGTATTTCGAGAATGGATAACATCAATCGTATGATATGATGCTGGGAAT CGGAAGAGGAACTATAATTATGTATTGCCGGGTATGTGCAGAGCATTCCC CCGAACCCTGAATAACAAACCCGATCCTTAAGCATACCCATATTTAGCCT GAGCCTCTACTCTGTACCAGAGTGTATCTCATGTTTATCGTTTCGTAGTA CACTCTTTGCGCATTGTCTGTTTTGTAAAAAATTCCTCTACAGAGACCTC TGCGATGAAGAATAATTTATAAATAGCAACACTTCTTTCGTCGTCTCCCC TCTCTCAATCGCACTCCATCGCAGTGTTCCGTTTGAAAATCTAAATTTAG AAAAAAAAATGACAACAGATCCTCTACGGCAATGAATTTTGAAATAAGCC GTAGATATCGGGTCTGTGTACAGACTACCCCCCCCTCGGACTGTGATTTT ATTTGATAATTGTTTTTTCTTACAACCAGATCGGGTTCTTCATCATCATT ATAACGTCATGGGCATGCGCGAGTACCATCATGATCAGTTTCTTCTTCTG GAATGTTGCATCATCTCCTCCTGCTGTTCTTCTCGTCATCAACATTCTGT TCGCGATGGCTGAAGGTGCTCTCGCTTCACAAATTCATGGTAAGATTGCT GTATACACGTTCTTTTTATAAGACAAACCATAACATAAGGCTTTGATGGC CAAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCTTTGCGGACTCTAA AACAGCCAATTTCTTAGGAAAATAGAGAACAATTATCACAAAATGGTTAG AATATTTTTAAGAACATTTTTAGGCTTAAAGCCCAAAAAGTTAAGAACAT CTGATGGCTTCAAAAATTTTGGATGTTCTTATAAAAAAACGTGTAAAAGA AAACTATTCCTAAGTAACAGGCGACTCATAATTAAGAGACTGACTGTTGC TCCCAAATAAAATCTTCAGATGTGAATTTTATTATATACACTATCAGAAA GCCTGCAAAACTTACCATAAAGTGTCTCACCTGGGAAGGTGACTTACCTT AATTTTAAATATATGACGTCACCAAGTGATGACAAAGTAATGTTACAAAA AGAAACCTGAAATTTAACAGTTGAGTTTTGCGATATTGATCATTCATAAT TTTGAATAATTTTGCCGGAGAAGCTGGTTTTTATGTCGATTGTCATTGCT CTGACTTGCGGAGTGATAAAAGGGAACATATGAGAAAACTGCGATACATG GAACTCTCTCTAATTCGAACTTCCATTCTTCGAATCTTTCTGTACTTCGA ACCTCAAGTATTGGTCCCCTTGGCTTGGAAATCGTATGAATTGCTCTCTG TAATTCAAATCTTTCTATAATTCGAAGAAAATTCCTGGTCCCTTGAAGAT CGGATTAGAGGGAGTAAACTATATTCAATTAGAATGGATACTCAAATGTT GCGAAATTTAGATTATGATTACAAGTTCAAGGATTGTCTACCTTACAGAT TCTGCTAAAACATCCTTATCCCTAAACCAAACCATAATGTATAATTAAAA TTTTTTCCATAATTTGATCCATTATAACAAGCCAACTGTGTATTTATTTT CTTACCAGGTTACTATGGTGTGATTTTTTTCGAGCGGAAAGCAGCAGCCT TCGCCACTTACTCTATAGCAAGATGCATCGGTGATACCATCAGTTTTGCT TATGGAAACAGTGTTTGTATGGTGACAAAAGTTGTGATTCTTCTACTAGT GAACTTCGTTGGAATCTGTTTGTTTTGTCATGTTTATTTTGACAACCAAC GGTTGAAGAAGAAGAAAATGATTCAGGCGTTGCAACCCTCGTAAAATAAC AATCATATCAAACGTCGTATCTCAGTGTATTCTGATTCTGAGCGTTATAT TTTGTATTCCTCATTCCTTCCGACGATAGTCCTTCTTCCCGTATCTATTC AAGTTGTTAGGTATTTATATATTTTACACACACAGCATATACATTATATG ACACTTATATATTTTATACACACATCATATACATTATATGAAACTTTTCT TGTAAGAAGAACCAATATTTTTGGATATCAAGGAAATAATGTTTAAAATA ACAATCATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009937XLOC_009937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017741-exon-sc0000274-1575043694:143814..144268TCONS_00017741-exon-sc0000274-1575043694:143814..144268Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1575043694:142571..142756TCONS_00017741-exon-sc0000274-1575043694:142571..142756Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1575043694:141321..141673TCONS_00017741-exon-sc0000274-1575043694:141321..141673Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1575043694:139430..139589TCONS_00017741-exon-sc0000274-1575043694:139430..139589Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1575043694:137957..138460TCONS_00017741-exon-sc0000274-1575043694:137957..138460Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1510915933:143814..144268TCONS_00017741-exon-sc0000274-1510915933:143814..144268Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1510915933:142571..142756TCONS_00017741-exon-sc0000274-1510915933:142571..142756Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1510915933:141321..141673TCONS_00017741-exon-sc0000274-1510915933:141321..141673Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1510915933:139430..139589TCONS_00017741-exon-sc0000274-1510915933:139430..139589Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1510915933:137957..138460TCONS_00017741-exon-sc0000274-1510915933:137957..138460Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1491911889:143814..144268TCONS_00017741-exon-sc0000274-1491911889:143814..144268Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1491911889:142571..142756TCONS_00017741-exon-sc0000274-1491911889:142571..142756Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1491911889:141321..141673TCONS_00017741-exon-sc0000274-1491911889:141321..141673Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1491911889:139430..139589TCONS_00017741-exon-sc0000274-1491911889:139430..139589Clytia hemisphaericaexon
TCONS_00017741-exon-sc0000274-1491911889:137957..138460TCONS_00017741-exon-sc0000274-1491911889:137957..138460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:137957..144268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460402 0.589535 0.0422439 0.162732 0 0 0.0629569 0.0039363 0.733733 0.548441 0 0.910847 2.15168 1.9 1.74853 1.49093 0.29083 0.357157 0.565299 0.37681 0.0117046 0.263346 0 0.0902927 0 0 0.58083 0 0 0
Blast
BLAST of TCONS_00017741 vs. Swiss-Prot (Human)
Match: UN93A (Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.503e-22
Identity = 104/416 (25.00%), Postives = 185/416 (44.47%), Query Frame = 2
Query:  176 KNLLVVSLAAFCNFFAFXXXXXXXXXXXXERGF--ITLCVLYAFYGVSSLFLPKLLITCIGFKFSIALTIFGYTIFQMIQFHPTTGMMIFGAISVGFSGSVFWVAVPSTITVLARQHSQHTGKDFEMTNQKFYAVYYFIFRFALVPXXXXXXXXXXXXDRKVNYHTNSTLQMNLQCGIKAC---PTLTSPLSHVNIKDVHRLFWIYLEVGLSGVPIILLFFSNIKE-QKDNQEEDVWVVVKDNLVAVLKIFREMYILELFIISIALGMVHSFMIGDMTK-----------IGFFIIIITSWACASTI-------------------------MISFFFWNVASSPPAVLLVINILFAMAEGALASQIHGYYGVIFFERKAAAFATYSIARCIGDTISFAYGNSVCMVTKVVILLLV 1297
            +N+LVVS      F A+   QSLQSSL +E G     L  LY    +SS+FLP LLI  +G K +I L++ GY  F +  F  +   +I  +I +G   +  W A  + +T+    H++  GK  +    +++ +++ IF+ + V              +  +  T    Q+   CG   C    T T+     + + V+ L  IY   G+  V +I  F   I++ Q++++ E   V     L++  K++R+  +  L ++ +  G+   F+  + T+           +G+ +I  ++     ++                         MI+   W   +   AV  V + L+ +A+    +Q +  YGV+F + K AAFA Y +   +G  I+F Y   +C+  K+ ILL V
Sbjct:    6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGV---WGNLISSLVFGQTPSQETLPEEQLT-SCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGV 417          
The following BLAST results are available for this feature:
BLAST of TCONS_00017741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UN93A2.503e-2225.00Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A... [more]
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