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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017724 ID=TCONS_00017724|Name=TCONS_00017724|organism=Clytia hemisphaerica|type=transcript|length=1081bp
aaatttgttactttctttttacttgtatgataactgatgatggcgtaagc
cgaaaagctttttattcaatttttgaaatatattttacttCACAACTCAA
CATGGCGAAAATTCACTTAACGTTTCAAATTGTCACATGTTAATACGTCA
GCGTTGTCGTTGCTGTCCGTATTTACGTTTGTTGTTTCGATCTTACACCC
GTAGATGAGATGGTTTGGCGTTAATGGTGGATCTCCAACTTCAGAATCGT
AAACGTAAGTCAATGGTCTGTTGTTTAGAATGTTTTCGATTCTCTTCAAT
AACGTTAACAGTTCGTTATAAGTTAGTATCTCTTTACGTAGAGACTTCTT
TAAGATGCGTTTCGTGGATTGGATCATCCTTTCAAACATACCACCCTGCC
AGGGGGCGGCCTCGATGTTGTACGACCAACGAATCATTCTCGATTTTGCG
AATTCTTTCGTTGCATTTGACTTGAAGTTCGAGCCGTTATCACTTACGTC
TTTGCTAGGAGCACCGTAACGATCAAAGAAGCGCTCAAGCATTTGAATAA
AGGCGTCGGATCCGTAATCTTCAGCAATGTCTAAATAAACAGCCCGTGTC
GTAGAGCATGTGATCAACGCGATCCATGTTTTGTATGTAGATTCATCGGT
ACCAAACGTGTTTCGAATATGGACAGGACCAGCGTAAGCCACGCCAATAT
TTGTAAAAGCAAAGTTTTTATCAAGACGTTCTTTTGGAAGAATAGGGACA
TCAGGGTACCGACACTTTTGTCCTTCAAAGATTTTACAAAGTTGACATTT
GTTAATAACAGTTCTTACGAGTGAACGTCCTTTTGGAATCCAGTACGATT
GACGTAGGTGATTCAATGTTTCTTTCGTTTTGTTGTGACCAACGCTAACG
TGGCTGTCACGAACGACTAGTAGTGTGAACGGATGACGTCTCGGAAGTAA
GATCGGATACTTTGTATCGAATGGAACAGGAGCGTTGCCAATACGACCAT
GACAAAGAAGGATGCCGTTGGAATCTGTGAATACGTTGAGTGATTTCTTC
GTTTGATCAAATTGTTTGTCATCAAAGTCTT Run BLAST on NCBI protein sequence of TCONS_00017724-protein >TCONS_00017724-protein ID=TCONS_00017724-protein|Name=TCONS_00017724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
DFDDKQFDQTKKSLNVFTDSNGILLCHGRIGNAPVPFDTKYPILLPRRHP
FTLLVVRDSHVSVGHNKTKETLNHLRQSYWIPKGRSLVRTVINKCQLCKI
FEGQKCRYPDVPILPKERLDKNFAFTNIGVAYAGPVHIRNTFGTDESTYK
TWIALITCSTTRAVYLDIAEDYGSDAFIQMLERFFDRYGAPSKDVSDNGS
NFKSNATKEFAKSRMIRWSYNIEAAPWQGGMFERMIQSTKRILKKSLRKE
ILTYNELLTLLKRIENILNNRPLTYVYDSEVGDPPLTPNHLIYGCKIETT
NVNTDSNDNADVLTCDNLKR Run BLAST on NCBI transcript from alignment at sc0000273:305154..306234 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017724 ID=TCONS_00017724|Name=TCONS_00017724|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at sc0000273:305154..306234 (Clytia hemisphaerica)
AAGACTTTGATGACAAACAATTTGATCAAACGAAGAAATCACTCAACGTA
TTCACAGATTCCAACGGCATCCTTCTTTGTCATGGTCGTATTGGCAACGC
TCCTGTTCCATTCGATACAAAGTATCCGATCTTACTTCCGAGACGTCATC
CGTTCACACTACTAGTCGTTCGTGACAGCCACGTTAGCGTTGGTCACAAC
AAAACGAAAGAAACATTGAATCACCTACGTCAATCGTACTGGATTCCAAA
AGGACGTTCACTCGTAAGAACTGTTATTAACAAATGTCAACTTTGTAAAA
TCTTTGAAGGACAAAAGTGTCGGTACCCTGATGTCCCTATTCTTCCAAAA
GAACGTCTTGATAAAAACTTTGCTTTTACAAATATTGGCGTGGCTTACGC
TGGTCCTGTCCATATTCGAAACACGTTTGGTACCGATGAATCTACATACA
AAACATGGATCGCGTTGATCACATGCTCTACGACACGGGCTGTTTATTTA
GACATTGCTGAAGATTACGGATCCGACGCCTTTATTCAAATGCTTGAGCG
CTTCTTTGATCGTTACGGTGCTCCTAGCAAAGACGTAAGTGATAACGGCT
CGAACTTCAAGTCAAATGCAACGAAAGAATTCGCAAAATCGAGAATGATT
CGTTGGTCGTACAACATCGAGGCCGCCCCCTGGCAGGGTGGTATGTTTGA
AAGGATGATCCAATCCACGAAACGCATCTTAAAGAAGTCTCTACGTAAAG
AGATACTAACTTATAACGAACTGTTAACGTTATTGAAGAGAATCGAAAAC
ATTCTAAACAACAGACCATTGACTTACGTTTACGATTCTGAAGTTGGAGA
TCCACCATTAACGCCAAACCATCTCATCTACGGGTGTAAGATCGAAACAA
CAAACGTAAATACGGACAGCAACGACAACGCTGACGTATTAACATGTGAC
AATTTGAAACGTTAAGTGAATTTTCGCCATGTTGAGTTGTGaagtaaaat
atatttcaaaaattgaataaaaagcttttcggcttacgccatcatcagtt
atcatacaagtaaaaagaaagtaacaaattt Coding sequence (CDS) from alignment at sc0000273:305154..306234 >TCONS_00017724 ID=TCONS_00017724|Name=TCONS_00017724|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000273:305154..306234 (Clytia hemisphaerica)
GACTTTGATGACAAACAATTTGATCAAACGAAGAAATCACTCAACGTATT
CACAGATTCCAACGGCATCCTTCTTTGTCATGGTCGTATTGGCAACGCTC
CTGTTCCATTCGATACAAAGTATCCGATCTTACTTCCGAGACGTCATCCG
TTCACACTACTAGTCGTTCGTGACAGCCACGTTAGCGTTGGTCACAACAA
AACGAAAGAAACATTGAATCACCTACGTCAATCGTACTGGATTCCAAAAG
GACGTTCACTCGTAAGAACTGTTATTAACAAATGTCAACTTTGTAAAATC
TTTGAAGGACAAAAGTGTCGGTACCCTGATGTCCCTATTCTTCCAAAAGA
ACGTCTTGATAAAAACTTTGCTTTTACAAATATTGGCGTGGCTTACGCTG
GTCCTGTCCATATTCGAAACACGTTTGGTACCGATGAATCTACATACAAA
ACATGGATCGCGTTGATCACATGCTCTACGACACGGGCTGTTTATTTAGA
CATTGCTGAAGATTACGGATCCGACGCCTTTATTCAAATGCTTGAGCGCT
TCTTTGATCGTTACGGTGCTCCTAGCAAAGACGTAAGTGATAACGGCTCG
AACTTCAAGTCAAATGCAACGAAAGAATTCGCAAAATCGAGAATGATTCG
TTGGTCGTACAACATCGAGGCCGCCCCCTGGCAGGGTGGTATGTTTGAAA
GGATGATCCAATCCACGAAACGCATCTTAAAGAAGTCTCTACGTAAAGAG
ATACTAACTTATAACGAACTGTTAACGTTATTGAAGAGAATCGAAAACAT
TCTAAACAACAGACCATTGACTTACGTTTACGATTCTGAAGTTGGAGATC
CACCATTAACGCCAAACCATCTCATCTACGGGTGTAAGATCGAAACAACA
AACGTAAATACGGACAGCAACGACAACGCTGACGTATTAACATGTGACAA
TTTGAAACGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017724-exon-sc0000273-1491911889:305154..306234 | TCONS_00017724-exon-sc0000273-1491911889:305154..306234 | Clytia hemisphaerica | exon |
| TCONS_00017724-exon-sc0000273-1510915933:305154..306234 | TCONS_00017724-exon-sc0000273-1510915933:305154..306234 | Clytia hemisphaerica | exon |
| TCONS_00017724-exon-sc0000273-1575043694:305154..306234 | TCONS_00017724-exon-sc0000273-1575043694:305154..306234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:305154..306234 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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