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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017723 ID=TCONS_00017723|Name=TCONS_00017723|organism=Clytia hemisphaerica|type=transcript|length=1424bp
CAATGCTTGAATCAGTCCAAGCGTAACACGTATCAATAATAATTTTACTT
TGTAGCTCGGAGGTAACTTGTTTCAATAATCGAGAAAGTAGTTGGGCCCC
TAATAGTTCGAGTTGGGGCATTGTCTTTTTCTTGAGTGGAGCAACTCTCA
ACGAGTGACGGTGTAGCAGCGCCCGAATCGACAGTGGGCTTCAGGTAAAC
ACAACAACCGTAGGCGTCTTGCGACGCGTCGCTAAAACCGTGAAGTTCAT
GCGACGTAACATTTCCATTGTTGGAATCATAAGCTCTATTAAAACGAATT
TCACTACATTCTCTCAAATCAGTAATCAgttctttccaaattttcaacgA
GTCGTCAGGAATGGGCTCATCCCATTGTAAGTTTTGTgtacaaagttttt
gaaataacAGTTTAAATTTCACGACGAGTGGATTAATCAACCCCAATGGG
TCAAAGATTGATGAAGCGAATTGTATAACGTTTCTTTTCGTaggattttc
gaaatttacTTTACGTAGAATTTCACTCAAACTAATAACCAGCGAGTCAT
TAGTTTTATCCCAATGAATACCGAGTACCTTGGTCAAATTGTGATCAATA
GTTTCAAGATCACCCACGTAACAGTTTTTAACTTTCACTTCTAGATTTGC
ACagtttgattgcaattttcGTAAGTTTAAGCTCGCAAGAGCAAAATGAG
ACTTACAGTTCTTGTAGAAGTCAAAGGCTTCTTGCATACTGTCGAAGCTC
GTAGAAAGGTCGTCGACATGAAGCGAATTCAATACCGTGTTTCGAAACAG
TTCGTTTTCGTGTCTGTTGATGTGATGACGTAATGTTGCGTTGAGCAGGA
ACGGTGAAGATGTCACTCCAAACAGGACACCACAGAAGCGATACGTCACG
AGATCATTGTTGTAGAAATTGTCGAAATCAATGTCGTTAATGTTCTTAAT
CCACAGGAATCGTACGTAATCACGGTCTTTCTCGTTGAGTCGAATTTGAA
GAAACGCTTTCTCCAAATCTGCAATAACACCAATCTTCTTGGCTCGGAAT
CGAAGTAAAGTCCCGAAAAGTGACGAAGTAAGCGACGGACCAGCGTGTAA
GCAATCGTTCAAAGCGGGACCATCAACAGAGGAGCTGGCGTCGAACACCA
TGCGAATCTTGGTTGTCAGCCTGTCTAATCGTAGAACAGGTCGGTGTGGC
ATGTAGTACGTTTGTCCTTCAATAGACGTATCAGGAGCGACTTCAATGAT
GCCTTGTCGAAGTTGATCTTTGATGATTTCATCATAATCGTGTAACAATT
GTTCGTTAGTCTTAAATTTCGTAAGCAGACTGTTCATTCGACGCGTAGAG
TTGTAGAGATTATCCGTTAAAATGTTTCTCAATGAATGGAAGCTGAACTT
CATAACGATCTTGTTCgaatttaa Run BLAST on NCBI protein sequence of TCONS_00017723-protein >TCONS_00017723-protein ID=TCONS_00017723-protein|Name=TCONS_00017723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
LNSNKIVMKFSFHSLRNILTDNLYNSTRRMNSLLTKFKTNEQLLHDYDEI
IKDQLRQGIIEVAPDTSIEGQTYYMPHRPVLRLDRLTTKIRMVFDASSSV
DGPALNDCLHAGPSLTSSLFGTLLRFRAKKIGVIADLEKAFLQIRLNEKD
RDYVRFLWIKNINDIDFDNFYNNDLVTYRFCGVLFGVTSSPFLLNATLRH
HINRHENELFRNTVLNSLHVDDLSTSFDSMQEAFDFYKNCKSHFALASLN
LRKLQSNCANLEVKVKNCYVGDLETIDHNLTKVLGIHWDKTNDSLVISLS
EILRKVNFENPTKRNVIQFASSIFDPLGLINPLVVKFKLLFQKLCTQNLQ
WDEPIPDDSLKIWKELITDLRECSEIRFNRAYDSNNGNVTSHELHGFSDA
SQDAYGCCVYLKPTVDSGAATPSLVESCSTQEKDNAPTRTIRGPTTFSII
ETSYLRATK Run BLAST on NCBI transcript from alignment at sc0000273:302393..303816 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017723 ID=TCONS_00017723|Name=TCONS_00017723|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at sc0000273:302393..303816 (Clytia hemisphaerica)
ttaaattcGAACAAGATCGTTATGAAGTTCAGCTTCCATTCATTGAGAAA
CATTTTAACGGATAATCTCTACAACTCTACGCGTCGAATGAACAGTCTGC
TTACGAAATTTAAGACTAACGAACAATTGTTACACGATTATGATGAAATC
ATCAAAGATCAACTTCGACAAGGCATCATTGAAGTCGCTCCTGATACGTC
TATTGAAGGACAAACGTACTACATGCCACACCGACCTGTTCTACGATTAG
ACAGGCTGACAACCAAGATTCGCATGGTGTTCGACGCCAGCTCCTCTGTT
GATGGTCCCGCTTTGAACGATTGCTTACACGCTGGTCCGTCGCTTACTTC
GTCACTTTTCGGGACTTTACTTCGATTCCGAGCCAAGAAGATTGGTGTTA
TTGCAGATTTGGAGAAAGCGTTTCTTCAAATTCGACTCAACGAGAAAGAC
CGTGATTACGTACGATTCCTGTGGATTAAGAACATTAACGACATTGATTT
CGACAATTTCTACAACAATGATCTCGTGACGTATCGCTTCTGTGGTGTCC
TGTTTGGAGTGACATCTTCACCGTTCCTGCTCAACGCAACATTACGTCAT
CACATCAACAGACACGAAAACGAACTGTTTCGAAACACGGTATTGAATTC
GCTTCATGTCGACGACCTTTCTACGAGCTTCGACAGTATGCAAGAAGCCT
TTGACTTCTACAAGAACTGTAAGTCTCATTTTGCTCTTGCGAGCTTAAAC
TTACgaaaattgcaatcaaactGTGCAAATCTAGAAGTGAAAGTTAAAAA
CTGTTACGTGGGTGATCTTGAAACTATTGATCACAATTTGACCAAGGTAC
TCGGTATTCATTGGGATAAAACTAATGACTCGCTGGTTATTAGTTTGAGT
GAAATTCTACGTAAAgtaaatttcgaaaatcctACGAAAAGAAACGTTAT
ACAATTCGCTTCATCAATCTTTGACCCATTGGGGTTGATTAATCCACTCG
TCGTGAAATTTAAACTgttatttcaaaaactttgtacACAAAACTTACAA
TGGGATGAGCCCATTCCTGACGACTcgttgaaaatttggaaagaacTGAT
TACTGATTTGAGAGAATGTAGTGAAATTCGTTTTAATAGAGCTTATGATT
CCAACAATGGAAATGTTACGTCGCATGAACTTCACGGTTTTAGCGACGCG
TCGCAAGACGCCTACGGTTGTTGTGTTTACCTGAAGCCCACTGTCGATTC
GGGCGCTGCTACACCGTCACTCGTTGAGAGTTGCTCCACTCAAGAAAAAG
ACAATGCCCCAACTCGAACTATTAGGGGCCCAACTACTTTCTCGATTATT
GAAACAAGTTACCTCCGAGCTACAAAGTAAAATTATTATTGATACGTGTT
ACGCTTGGACTGATTCAAGCATTG Coding sequence (CDS) from alignment at sc0000273:302393..303816 >TCONS_00017723 ID=TCONS_00017723|Name=TCONS_00017723|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000273:302393..303816 (Clytia hemisphaerica)
ttaaattcGAACAAGATCGTTATGAAGTTCAGCTTCCATTCATTGAGAAA
CATTTTAACGGATAATCTCTACAACTCTACGCGTCGAATGAACAGTCTGC
TTACGAAATTTAAGACTAACGAACAATTGTTACACGATTATGATGAAATC
ATCAAAGATCAACTTCGACAAGGCATCATTGAAGTCGCTCCTGATACGTC
TATTGAAGGACAAACGTACTACATGCCACACCGACCTGTTCTACGATTAG
ACAGGCTGACAACCAAGATTCGCATGGTGTTCGACGCCAGCTCCTCTGTT
GATGGTCCCGCTTTGAACGATTGCTTACACGCTGGTCCGTCGCTTACTTC
GTCACTTTTCGGGACTTTACTTCGATTCCGAGCCAAGAAGATTGGTGTTA
TTGCAGATTTGGAGAAAGCGTTTCTTCAAATTCGACTCAACGAGAAAGAC
CGTGATTACGTACGATTCCTGTGGATTAAGAACATTAACGACATTGATTT
CGACAATTTCTACAACAATGATCTCGTGACGTATCGCTTCTGTGGTGTCC
TGTTTGGAGTGACATCTTCACCGTTCCTGCTCAACGCAACATTACGTCAT
CACATCAACAGACACGAAAACGAACTGTTTCGAAACACGGTATTGAATTC
GCTTCATGTCGACGACCTTTCTACGAGCTTCGACAGTATGCAAGAAGCCT
TTGACTTCTACAAGAACTGTAAGTCTCATTTTGCTCTTGCGAGCTTAAAC
TTACgaaaattgcaatcaaactGTGCAAATCTAGAAGTGAAAGTTAAAAA
CTGTTACGTGGGTGATCTTGAAACTATTGATCACAATTTGACCAAGGTAC
TCGGTATTCATTGGGATAAAACTAATGACTCGCTGGTTATTAGTTTGAGT
GAAATTCTACGTAAAgtaaatttcgaaaatcctACGAAAAGAAACGTTAT
ACAATTCGCTTCATCAATCTTTGACCCATTGGGGTTGATTAATCCACTCG
TCGTGAAATTTAAACTgttatttcaaaaactttgtacACAAAACTTACAA
TGGGATGAGCCCATTCCTGACGACTcgttgaaaatttggaaagaacTGAT
TACTGATTTGAGAGAATGTAGTGAAATTCGTTTTAATAGAGCTTATGATT
CCAACAATGGAAATGTTACGTCGCATGAACTTCACGGTTTTAGCGACGCG
TCGCAAGACGCCTACGGTTGTTGTGTTTACCTGAAGCCCACTGTCGATTC
GGGCGCTGCTACACCGTCACTCGTTGAGAGTTGCTCCACTCAAGAAAAAG
ACAATGCCCCAACTCGAACTATTAGGGGCCCAACTACTTTCTCGATTATT
GAAACAAGTTACCTCCGAGCTACAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017723-exon-sc0000273-1491911889:302393..303816 | TCONS_00017723-exon-sc0000273-1491911889:302393..303816 | Clytia hemisphaerica | exon |
| TCONS_00017723-exon-sc0000273-1510915933:302393..303816 | TCONS_00017723-exon-sc0000273-1510915933:302393..303816 | Clytia hemisphaerica | exon |
| TCONS_00017723-exon-sc0000273-1575043694:302393..303816 | TCONS_00017723-exon-sc0000273-1575043694:302393..303816 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:302393..303816 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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